data_6WP6 # _model_server_result.job_id wgcqpD72TLYxKb3iNVTiWQ _model_server_result.datetime_utc '2024-11-23 20:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6WP6 # _exptl.entry_id 6WP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.27 _cell.angle_gamma 90 _cell.entry_id 6WP6 _cell.length_a 113.065 _cell.length_b 92.924 _cell.length_c 109.391 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -24.434643 0 327.262076 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 291 C GLU 272 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc2 A OD1 ASP 315 C ASP 296 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 D MG MG . C MG 602 1_555 E O1 OXL . C OXL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 D MG MG . C MG 602 1_555 E O2 OXL . C OXL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc5 D MG MG . C MG 602 1_555 J O HOH . C HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 D MG MG . C MG 602 1_555 J O HOH . C HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc7 B OD1 ASN 94 A ASN 75 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc8 B OG SER 96 A SER 77 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc9 B OD1 ASP 132 A ASP 113 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc10 B O THR 133 A THR 114 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 250 n n N O2 NO3 sing 251 n n N O3 NO3 sing 252 n n # _atom_sites.entry_id 6WP6 _atom_sites.fract_transf_matrix[1][1] 0.008844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00066 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 C 1 601 601 NO3 NO3 . D 3 MG C 1 602 1 MG MG . E 4 OXL C 1 603 1 OXL OXL . F 5 GOL C 1 604 1 GOL GOL . G 3 MG A 1 601 2 MG MG . H 5 GOL A 1 602 2 GOL GOL . I 5 GOL A 1 603 3 GOL GOL . J 6 HOH C 1 701 6 HOH HOH . J 6 HOH C 2 702 2 HOH HOH . J 6 HOH C 3 703 35 HOH HOH . J 6 HOH C 4 704 39 HOH HOH . J 6 HOH C 5 705 41 HOH HOH . J 6 HOH C 6 706 74 HOH HOH . J 6 HOH C 7 707 30 HOH HOH . J 6 HOH C 8 708 43 HOH HOH . J 6 HOH C 9 709 9 HOH HOH . J 6 HOH C 10 710 29 HOH HOH . J 6 HOH C 11 711 17 HOH HOH . J 6 HOH C 12 712 15 HOH HOH . J 6 HOH C 13 713 44 HOH HOH . J 6 HOH C 14 714 24 HOH HOH . J 6 HOH C 15 715 7 HOH HOH . J 6 HOH C 16 716 1 HOH HOH . J 6 HOH C 17 717 27 HOH HOH . J 6 HOH C 18 718 26 HOH HOH . J 6 HOH C 19 719 33 HOH HOH . J 6 HOH C 20 720 14 HOH HOH . J 6 HOH C 21 721 34 HOH HOH . J 6 HOH C 22 722 22 HOH HOH . J 6 HOH C 23 723 12 HOH HOH . J 6 HOH C 24 724 16 HOH HOH . J 6 HOH C 25 725 73 HOH HOH . J 6 HOH C 26 726 25 HOH HOH . J 6 HOH C 27 727 40 HOH HOH . J 6 HOH C 28 728 28 HOH HOH . J 6 HOH C 29 729 21 HOH HOH . J 6 HOH C 30 730 38 HOH HOH . J 6 HOH C 31 731 42 HOH HOH . J 6 HOH C 32 732 77 HOH HOH . K 6 HOH A 1 701 57 HOH HOH . K 6 HOH A 2 702 13 HOH HOH . K 6 HOH A 3 703 64 HOH HOH . K 6 HOH A 4 704 70 HOH HOH . K 6 HOH A 5 705 50 HOH HOH . K 6 HOH A 6 706 72 HOH HOH . K 6 HOH A 7 707 55 HOH HOH . K 6 HOH A 8 708 67 HOH HOH . K 6 HOH A 9 709 32 HOH HOH . K 6 HOH A 10 710 52 HOH HOH . K 6 HOH A 11 711 59 HOH HOH . K 6 HOH A 12 712 53 HOH HOH . K 6 HOH A 13 713 58 HOH HOH . K 6 HOH A 14 714 45 HOH HOH . K 6 HOH A 15 715 76 HOH HOH . K 6 HOH A 16 716 69 HOH HOH . K 6 HOH A 17 717 71 HOH HOH . K 6 HOH A 18 718 68 HOH HOH . K 6 HOH A 19 719 75 HOH HOH . K 6 HOH A 20 720 60 HOH HOH . K 6 HOH A 21 721 54 HOH HOH . K 6 HOH A 22 722 51 HOH HOH . K 6 HOH A 23 723 56 HOH HOH . K 6 HOH A 24 724 61 HOH HOH . K 6 HOH A 25 725 62 HOH HOH . K 6 HOH A 26 726 47 HOH HOH . K 6 HOH A 27 727 49 HOH HOH . K 6 HOH A 28 728 65 HOH HOH . K 6 HOH A 29 729 37 HOH HOH . K 6 HOH A 30 730 48 HOH HOH . K 6 HOH A 31 731 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . C 2 20.851 26.951 167.128 1 51.74 ? N NO3 601 C 1 HETATM 2 O O1 NO3 . . . C 2 20.358 26.785 168.282 1 62.79 ? O1 NO3 601 C 1 HETATM 3 O O2 NO3 . . . C 2 20.188 27.561 166.238 1 46.38 ? O2 NO3 601 C 1 HETATM 4 O O3 NO3 . . . C 2 22.007 26.508 166.861 1 49.43 ? O3 NO3 601 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #