data_6WQ9 # _model_server_result.job_id LPw1a53sjDNIrE-br-HvSw _model_server_result.datetime_utc '2024-10-19 16:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6WQ9 # _exptl.entry_id 6WQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.36 _cell.angle_gamma 90 _cell.entry_id 6WQ9 _cell.length_a 42.312 _cell.length_b 41.345 _cell.length_c 72.285 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 C ZN ZN . A ZN 302 1_555 D N38 U7J . A U7J 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6WQ9 _atom_sites.fract_transf_matrix[1][1] 0.023634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00605 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 301 301 TRS TRS . C 3 ZN A 1 302 262 ZN ZN . D 4 U7J A 1 303 1 U7J 166 . E 5 GOL A 1 304 400 GOL GOL . F 6 HOH A 1 401 221 HOH HOH . F 6 HOH A 2 402 50 HOH HOH . F 6 HOH A 3 403 228 HOH HOH . F 6 HOH A 4 404 140 HOH HOH . F 6 HOH A 5 405 244 HOH HOH . F 6 HOH A 6 406 237 HOH HOH . F 6 HOH A 7 407 137 HOH HOH . F 6 HOH A 8 408 232 HOH HOH . F 6 HOH A 9 409 128 HOH HOH . F 6 HOH A 10 410 123 HOH HOH . F 6 HOH A 11 411 106 HOH HOH . F 6 HOH A 12 412 144 HOH HOH . F 6 HOH A 13 413 181 HOH HOH . F 6 HOH A 14 414 85 HOH HOH . F 6 HOH A 15 415 145 HOH HOH . F 6 HOH A 16 416 229 HOH HOH . F 6 HOH A 17 417 209 HOH HOH . F 6 HOH A 18 418 201 HOH HOH . F 6 HOH A 19 419 35 HOH HOH . F 6 HOH A 20 420 191 HOH HOH . F 6 HOH A 21 421 211 HOH HOH . F 6 HOH A 22 422 226 HOH HOH . F 6 HOH A 23 423 240 HOH HOH . F 6 HOH A 24 424 27 HOH HOH . F 6 HOH A 25 425 126 HOH HOH . F 6 HOH A 26 426 127 HOH HOH . F 6 HOH A 27 427 11 HOH HOH . F 6 HOH A 28 428 108 HOH HOH . F 6 HOH A 29 429 156 HOH HOH . F 6 HOH A 30 430 204 HOH HOH . F 6 HOH A 31 431 71 HOH HOH . F 6 HOH A 32 432 197 HOH HOH . F 6 HOH A 33 433 178 HOH HOH . F 6 HOH A 34 434 175 HOH HOH . F 6 HOH A 35 435 146 HOH HOH . F 6 HOH A 36 436 92 HOH HOH . F 6 HOH A 37 437 30 HOH HOH . F 6 HOH A 38 438 4 HOH HOH . F 6 HOH A 39 439 66 HOH HOH . F 6 HOH A 40 440 225 HOH HOH . F 6 HOH A 41 441 162 HOH HOH . F 6 HOH A 42 442 109 HOH HOH . F 6 HOH A 43 443 171 HOH HOH . F 6 HOH A 44 444 42 HOH HOH . F 6 HOH A 45 445 9 HOH HOH . F 6 HOH A 46 446 62 HOH HOH . F 6 HOH A 47 447 36 HOH HOH . F 6 HOH A 48 448 83 HOH HOH . F 6 HOH A 49 449 177 HOH HOH . F 6 HOH A 50 450 79 HOH HOH . F 6 HOH A 51 451 111 HOH HOH . F 6 HOH A 52 452 26 HOH HOH . F 6 HOH A 53 453 200 HOH HOH . F 6 HOH A 54 454 110 HOH HOH . F 6 HOH A 55 455 17 HOH HOH . F 6 HOH A 56 456 113 HOH HOH . F 6 HOH A 57 457 80 HOH HOH . F 6 HOH A 58 458 233 HOH HOH . F 6 HOH A 59 459 236 HOH HOH . F 6 HOH A 60 460 135 HOH HOH . F 6 HOH A 61 461 190 HOH HOH . F 6 HOH A 62 462 91 HOH HOH . F 6 HOH A 63 463 98 HOH HOH . F 6 HOH A 64 464 159 HOH HOH . F 6 HOH A 65 465 25 HOH HOH . F 6 HOH A 66 466 20 HOH HOH . F 6 HOH A 67 467 69 HOH HOH . F 6 HOH A 68 468 227 HOH HOH . F 6 HOH A 69 469 119 HOH HOH . F 6 HOH A 70 470 38 HOH HOH . F 6 HOH A 71 471 15 HOH HOH . F 6 HOH A 72 472 179 HOH HOH . F 6 HOH A 73 473 129 HOH HOH . F 6 HOH A 74 474 56 HOH HOH . F 6 HOH A 75 475 12 HOH HOH . F 6 HOH A 76 476 235 HOH HOH . F 6 HOH A 77 477 23 HOH HOH . F 6 HOH A 78 478 95 HOH HOH . F 6 HOH A 79 479 7 HOH HOH . F 6 HOH A 80 480 31 HOH HOH . F 6 HOH A 81 481 130 HOH HOH . F 6 HOH A 82 482 224 HOH HOH . F 6 HOH A 83 483 116 HOH HOH . F 6 HOH A 84 484 73 HOH HOH . F 6 HOH A 85 485 22 HOH HOH . F 6 HOH A 86 486 112 HOH HOH . F 6 HOH A 87 487 101 HOH HOH . F 6 HOH A 88 488 41 HOH HOH . F 6 HOH A 89 489 64 HOH HOH . F 6 HOH A 90 490 149 HOH HOH . F 6 HOH A 91 491 72 HOH HOH . F 6 HOH A 92 492 194 HOH HOH . F 6 HOH A 93 493 10 HOH HOH . F 6 HOH A 94 494 14 HOH HOH . F 6 HOH A 95 495 2 HOH HOH . F 6 HOH A 96 496 99 HOH HOH . F 6 HOH A 97 497 105 HOH HOH . F 6 HOH A 98 498 94 HOH HOH . F 6 HOH A 99 499 39 HOH HOH . F 6 HOH A 100 500 169 HOH HOH . F 6 HOH A 101 501 157 HOH HOH . F 6 HOH A 102 502 188 HOH HOH . F 6 HOH A 103 503 6 HOH HOH . F 6 HOH A 104 504 138 HOH HOH . F 6 HOH A 105 505 241 HOH HOH . F 6 HOH A 106 506 49 HOH HOH . F 6 HOH A 107 507 84 HOH HOH . F 6 HOH A 108 508 5 HOH HOH . F 6 HOH A 109 509 24 HOH HOH . F 6 HOH A 110 510 8 HOH HOH . F 6 HOH A 111 511 210 HOH HOH . F 6 HOH A 112 512 154 HOH HOH . F 6 HOH A 113 513 242 HOH HOH . F 6 HOH A 114 514 223 HOH HOH . F 6 HOH A 115 515 47 HOH HOH . F 6 HOH A 116 516 75 HOH HOH . F 6 HOH A 117 517 86 HOH HOH . F 6 HOH A 118 518 161 HOH HOH . F 6 HOH A 119 519 68 HOH HOH . F 6 HOH A 120 520 34 HOH HOH . F 6 HOH A 121 521 125 HOH HOH . F 6 HOH A 122 522 148 HOH HOH . F 6 HOH A 123 523 153 HOH HOH . F 6 HOH A 124 524 67 HOH HOH . F 6 HOH A 125 525 55 HOH HOH . F 6 HOH A 126 526 205 HOH HOH . F 6 HOH A 127 527 54 HOH HOH . F 6 HOH A 128 528 57 HOH HOH . F 6 HOH A 129 529 167 HOH HOH . F 6 HOH A 130 530 124 HOH HOH . F 6 HOH A 131 531 170 HOH HOH . F 6 HOH A 132 532 216 HOH HOH . F 6 HOH A 133 533 93 HOH HOH . F 6 HOH A 134 534 215 HOH HOH . F 6 HOH A 135 535 51 HOH HOH . F 6 HOH A 136 536 152 HOH HOH . F 6 HOH A 137 537 33 HOH HOH . F 6 HOH A 138 538 183 HOH HOH . F 6 HOH A 139 539 139 HOH HOH . F 6 HOH A 140 540 117 HOH HOH . F 6 HOH A 141 541 96 HOH HOH . F 6 HOH A 142 542 97 HOH HOH . F 6 HOH A 143 543 136 HOH HOH . F 6 HOH A 144 544 44 HOH HOH . F 6 HOH A 145 545 214 HOH HOH . F 6 HOH A 146 546 77 HOH HOH . F 6 HOH A 147 547 102 HOH HOH . F 6 HOH A 148 548 164 HOH HOH . F 6 HOH A 149 549 198 HOH HOH . F 6 HOH A 150 550 81 HOH HOH . F 6 HOH A 151 551 202 HOH HOH . F 6 HOH A 152 552 43 HOH HOH . F 6 HOH A 153 553 155 HOH HOH . F 6 HOH A 154 554 134 HOH HOH . F 6 HOH A 155 555 203 HOH HOH . F 6 HOH A 156 556 21 HOH HOH . F 6 HOH A 157 557 118 HOH HOH . F 6 HOH A 158 558 185 HOH HOH . F 6 HOH A 159 559 222 HOH HOH . F 6 HOH A 160 560 103 HOH HOH . F 6 HOH A 161 561 45 HOH HOH . F 6 HOH A 162 562 132 HOH HOH . F 6 HOH A 163 563 53 HOH HOH . F 6 HOH A 164 564 104 HOH HOH . F 6 HOH A 165 565 13 HOH HOH . F 6 HOH A 166 566 115 HOH HOH . F 6 HOH A 167 567 29 HOH HOH . F 6 HOH A 168 568 199 HOH HOH . F 6 HOH A 169 569 19 HOH HOH . F 6 HOH A 170 570 187 HOH HOH . F 6 HOH A 171 571 141 HOH HOH . F 6 HOH A 172 572 189 HOH HOH . F 6 HOH A 173 573 176 HOH HOH . F 6 HOH A 174 574 89 HOH HOH . F 6 HOH A 175 575 78 HOH HOH . F 6 HOH A 176 576 3 HOH HOH . F 6 HOH A 177 577 32 HOH HOH . F 6 HOH A 178 578 59 HOH HOH . F 6 HOH A 179 579 163 HOH HOH . F 6 HOH A 180 580 184 HOH HOH . F 6 HOH A 181 581 231 HOH HOH . F 6 HOH A 182 582 142 HOH HOH . F 6 HOH A 183 583 18 HOH HOH . F 6 HOH A 184 584 219 HOH HOH . F 6 HOH A 185 585 192 HOH HOH . F 6 HOH A 186 586 238 HOH HOH . F 6 HOH A 187 587 114 HOH HOH . F 6 HOH A 188 588 65 HOH HOH . F 6 HOH A 189 589 255 HOH HOH . F 6 HOH A 190 590 196 HOH HOH . F 6 HOH A 191 591 131 HOH HOH . F 6 HOH A 192 592 133 HOH HOH . F 6 HOH A 193 593 120 HOH HOH . F 6 HOH A 194 594 251 HOH HOH . F 6 HOH A 195 595 87 HOH HOH . F 6 HOH A 196 596 70 HOH HOH . F 6 HOH A 197 597 76 HOH HOH . F 6 HOH A 198 598 88 HOH HOH . F 6 HOH A 199 599 160 HOH HOH . F 6 HOH A 200 600 252 HOH HOH . F 6 HOH A 201 601 37 HOH HOH . F 6 HOH A 202 602 243 HOH HOH . F 6 HOH A 203 603 254 HOH HOH . F 6 HOH A 204 604 147 HOH HOH . F 6 HOH A 205 605 249 HOH HOH . F 6 HOH A 206 606 150 HOH HOH . F 6 HOH A 207 607 206 HOH HOH . F 6 HOH A 208 608 48 HOH HOH . F 6 HOH A 209 609 248 HOH HOH . F 6 HOH A 210 610 207 HOH HOH . F 6 HOH A 211 611 180 HOH HOH . F 6 HOH A 212 612 158 HOH HOH . F 6 HOH A 213 613 40 HOH HOH . F 6 HOH A 214 614 250 HOH HOH . F 6 HOH A 215 615 165 HOH HOH . F 6 HOH A 216 616 193 HOH HOH . F 6 HOH A 217 617 173 HOH HOH . F 6 HOH A 218 618 195 HOH HOH . F 6 HOH A 219 619 46 HOH HOH . F 6 HOH A 220 620 121 HOH HOH . F 6 HOH A 221 621 256 HOH HOH . F 6 HOH A 222 622 74 HOH HOH . F 6 HOH A 223 623 90 HOH HOH . F 6 HOH A 224 624 60 HOH HOH . F 6 HOH A 225 625 218 HOH HOH . F 6 HOH A 226 626 245 HOH HOH . F 6 HOH A 227 627 212 HOH HOH . F 6 HOH A 228 628 230 HOH HOH . F 6 HOH A 229 629 122 HOH HOH . F 6 HOH A 230 630 151 HOH HOH . F 6 HOH A 231 631 182 HOH HOH . F 6 HOH A 232 632 217 HOH HOH . F 6 HOH A 233 633 208 HOH HOH . F 6 HOH A 234 634 58 HOH HOH . F 6 HOH A 235 635 247 HOH HOH . F 6 HOH A 236 636 172 HOH HOH . F 6 HOH A 237 637 61 HOH HOH . F 6 HOH A 238 638 213 HOH HOH . F 6 HOH A 239 639 168 HOH HOH . F 6 HOH A 240 640 253 HOH HOH . F 6 HOH A 241 641 220 HOH HOH . F 6 HOH A 242 642 166 HOH HOH . F 6 HOH A 243 643 186 HOH HOH . F 6 HOH A 244 644 246 HOH HOH . F 6 HOH A 245 645 239 HOH HOH . F 6 HOH A 246 646 63 HOH HOH . F 6 HOH A 247 647 234 HOH HOH . F 6 HOH A 248 648 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -25.525 2.113 11.39 1 24.22 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 5 -26.316 3.208 10.831 1 24.31 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 5 -26.232 0.837 11.038 1 17.41 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 5 -26.363 0.692 9.692 1 12.6 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 5 -25.51 -0.448 11.558 1 19.96 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 5 -24.171 -0.346 11.229 1 17.76 ? O3 GOL 304 A 1 HETATM 7 H H11 GOL . . . E 5 -25.425 2.177 12.349 1 29.07 ? H11 GOL 304 A 1 HETATM 8 H H12 GOL . . . E 5 -24.625 2.103 11.03 1 29.07 ? H12 GOL 304 A 1 HETATM 9 H HO1 GOL . . . E 5 -25.911 3.927 11.035 1 29.18 ? HO1 GOL 304 A 1 HETATM 10 H H2 GOL . . . E 5 -27.136 0.864 11.378 1 20.9 ? H2 GOL 304 A 1 HETATM 11 H H31 GOL . . . E 5 -25.709 -0.614 12.453 1 23.96 ? H31 GOL 304 A 1 HETATM 12 H H32 GOL . . . E 5 -25.904 -1.21 11.106 1 23.96 ? H32 GOL 304 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #