data_6WQA # _model_server_result.job_id 107oN3sDnNbRwVBAi7-Byw _model_server_result.datetime_utc '2024-11-21 13:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6WQA # _exptl.entry_id 6WQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WQA _cell.length_a 40.35 _cell.length_b 180.5 _cell.length_c 142.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc3 B NA NA . A NA 1201 1_555 CA O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc4 B NA NA . A NA 1201 1_555 CA O HOH . A HOH 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc5 B NA NA . A NA 1201 1_555 CA O HOH . A HOH 1365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WQA _atom_sites.fract_transf_matrix[1][1] 0.024783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1201 1201 NA NA . C 3 ZMA A 1 1202 1301 ZMA ZMA . D 4 CLR A 1 1203 1601 CLR CLR . E 5 OLA A 1 1204 2101 OLA OLA . F 5 OLA A 1 1205 2408 OLA OLA . G 5 OLA A 1 1206 2409 OLA OLA . H 5 OLA A 1 1207 2410 OLA OLA . I 5 OLA A 1 1208 2416 OLA OLA . J 5 OLA A 1 1209 2418 OLA OLA . K 5 OLA A 1 1210 2420 OLA OLA . L 6 OLC A 1 1211 2425 OLC OLC . M 5 OLA A 1 1212 3101 OLA OLA . N 7 GOL A 1 1213 3201 GOL GOL . O 5 OLA A 1 1214 3401 OLA OLA . P 6 OLC A 1 1215 3601 OLC OLC . Q 4 CLR A 1 1216 3701 CLR CLR . R 4 CLR A 1 1217 3801 CLR CLR . S 6 OLC A 1 1218 3901 OLC OLC . T 5 OLA A 1 1219 4301 OLA OLA . U 5 OLA A 1 1220 4401 OLA OLA . V 5 OLA A 1 1221 4501 OLA OLA . W 5 OLA A 1 1222 4601 OLA OLA . X 8 OLB A 1 1223 4726 OLB OLB . Y 5 OLA A 1 1224 4801 OLA OLA . Z 5 OLA A 1 1225 4901 OLA OLA . AA 6 OLC A 1 1226 5001 OLC OLC . BA 6 OLC A 1 1227 5101 OLC OLC . CA 9 HOH A 1 1301 47 HOH HOH . CA 9 HOH A 2 1302 6 HOH HOH . CA 9 HOH A 3 1303 209 HOH HOH . CA 9 HOH A 4 1304 4 HOH HOH . CA 9 HOH A 5 1305 16 HOH HOH . CA 9 HOH A 6 1306 31 HOH HOH . CA 9 HOH A 7 1307 2 HOH HOH . CA 9 HOH A 8 1308 41 HOH HOH . CA 9 HOH A 9 1309 13 HOH HOH . CA 9 HOH A 10 1310 15 HOH HOH . CA 9 HOH A 11 1311 211 HOH HOH . CA 9 HOH A 12 1312 33 HOH HOH . CA 9 HOH A 13 1313 50 HOH HOH . CA 9 HOH A 14 1314 5 HOH HOH . CA 9 HOH A 15 1315 20 HOH HOH . CA 9 HOH A 16 1316 29 HOH HOH . CA 9 HOH A 17 1317 231 HOH HOH . CA 9 HOH A 18 1318 54 HOH HOH . CA 9 HOH A 19 1319 23 HOH HOH . CA 9 HOH A 20 1320 46 HOH HOH . CA 9 HOH A 21 1321 12 HOH HOH . CA 9 HOH A 22 1322 223 HOH HOH . CA 9 HOH A 23 1323 1 HOH HOH . CA 9 HOH A 24 1324 221 HOH HOH . CA 9 HOH A 25 1325 228 HOH HOH . CA 9 HOH A 26 1326 17 HOH HOH . CA 9 HOH A 27 1327 71 HOH HOH . CA 9 HOH A 28 1328 220 HOH HOH . CA 9 HOH A 29 1329 215 HOH HOH . CA 9 HOH A 30 1330 35 HOH HOH . CA 9 HOH A 31 1331 85 HOH HOH . CA 9 HOH A 32 1332 28 HOH HOH . CA 9 HOH A 33 1333 11 HOH HOH . CA 9 HOH A 34 1334 9 HOH HOH . CA 9 HOH A 35 1335 8 HOH HOH . CA 9 HOH A 36 1336 67 HOH HOH . CA 9 HOH A 37 1337 27 HOH HOH . CA 9 HOH A 38 1338 207 HOH HOH . CA 9 HOH A 39 1339 19 HOH HOH . CA 9 HOH A 40 1340 60 HOH HOH . CA 9 HOH A 41 1341 224 HOH HOH . CA 9 HOH A 42 1342 24 HOH HOH . CA 9 HOH A 43 1343 21 HOH HOH . CA 9 HOH A 44 1344 208 HOH HOH . CA 9 HOH A 45 1345 14 HOH HOH . CA 9 HOH A 46 1346 49 HOH HOH . CA 9 HOH A 47 1347 38 HOH HOH . CA 9 HOH A 48 1348 218 HOH HOH . CA 9 HOH A 49 1349 34 HOH HOH . CA 9 HOH A 50 1350 32 HOH HOH . CA 9 HOH A 51 1351 52 HOH HOH . CA 9 HOH A 52 1352 225 HOH HOH . CA 9 HOH A 53 1353 44 HOH HOH . CA 9 HOH A 54 1354 72 HOH HOH . CA 9 HOH A 55 1355 219 HOH HOH . CA 9 HOH A 56 1356 230 HOH HOH . CA 9 HOH A 57 1357 210 HOH HOH . CA 9 HOH A 58 1358 30 HOH HOH . CA 9 HOH A 59 1359 3 HOH HOH . CA 9 HOH A 60 1360 217 HOH HOH . CA 9 HOH A 61 1361 26 HOH HOH . CA 9 HOH A 62 1362 229 HOH HOH . CA 9 HOH A 63 1363 64 HOH HOH . CA 9 HOH A 64 1364 43 HOH HOH . CA 9 HOH A 65 1365 10 HOH HOH . CA 9 HOH A 66 1366 39 HOH HOH . CA 9 HOH A 67 1367 22 HOH HOH . CA 9 HOH A 68 1368 40 HOH HOH . CA 9 HOH A 69 1369 37 HOH HOH . CA 9 HOH A 70 1370 42 HOH HOH . CA 9 HOH A 71 1371 48 HOH HOH . CA 9 HOH A 72 1372 7 HOH HOH . CA 9 HOH A 73 1373 222 HOH HOH . CA 9 HOH A 74 1374 106 HOH HOH . CA 9 HOH A 75 1375 59 HOH HOH . CA 9 HOH A 76 1376 212 HOH HOH . CA 9 HOH A 77 1377 18 HOH HOH . CA 9 HOH A 78 1378 36 HOH HOH . CA 9 HOH A 79 1379 214 HOH HOH . CA 9 HOH A 80 1380 227 HOH HOH . CA 9 HOH A 81 1381 45 HOH HOH . CA 9 HOH A 82 1382 216 HOH HOH . CA 9 HOH A 83 1383 213 HOH HOH . CA 9 HOH A 84 1384 226 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.077 _atom_site.Cartn_y 189.117 _atom_site.Cartn_z 16.923 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.43 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #