data_6WQD # _model_server_result.job_id 0AhnZZXFRn8jNAHrKt9xlQ _model_server_result.datetime_utc '2025-01-28 03:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 6WQD # _exptl.entry_id 6WQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.382 _cell.angle_gamma 90 _cell.entry_id 6WQD _cell.length_a 47.261 _cell.length_b 55.103 _cell.length_c 84.397 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 11 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 8 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 11 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 8 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.082 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6WQD _atom_sites.fract_transf_matrix[1][1] 0.021159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000141 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 101 101 EDO EDO . F 3 EDO B 1 301 301 EDO EDO . G 3 EDO B 1 302 302 EDO EDO . H 4 HOH A 1 201 38 HOH HOH . H 4 HOH A 2 202 77 HOH HOH . H 4 HOH A 3 203 56 HOH HOH . H 4 HOH A 4 204 63 HOH HOH . H 4 HOH A 5 205 21 HOH HOH . H 4 HOH A 6 206 34 HOH HOH . H 4 HOH A 7 207 62 HOH HOH . H 4 HOH A 8 208 47 HOH HOH . I 4 HOH B 1 401 23 HOH HOH . I 4 HOH B 2 402 70 HOH HOH . I 4 HOH B 3 403 2 HOH HOH . I 4 HOH B 4 404 46 HOH HOH . I 4 HOH B 5 405 22 HOH HOH . I 4 HOH B 6 406 51 HOH HOH . I 4 HOH B 7 407 30 HOH HOH . I 4 HOH B 8 408 81 HOH HOH . I 4 HOH B 9 409 5 HOH HOH . I 4 HOH B 10 410 58 HOH HOH . I 4 HOH B 11 411 72 HOH HOH . I 4 HOH B 12 412 74 HOH HOH . I 4 HOH B 13 413 76 HOH HOH . I 4 HOH B 14 414 19 HOH HOH . I 4 HOH B 15 415 79 HOH HOH . I 4 HOH B 16 416 15 HOH HOH . I 4 HOH B 17 417 84 HOH HOH . I 4 HOH B 18 418 80 HOH HOH . I 4 HOH B 19 419 86 HOH HOH . I 4 HOH B 20 420 24 HOH HOH . I 4 HOH B 21 421 85 HOH HOH . I 4 HOH B 22 422 39 HOH HOH . I 4 HOH B 23 423 57 HOH HOH . I 4 HOH B 24 424 45 HOH HOH . I 4 HOH B 25 425 73 HOH HOH . I 4 HOH B 26 426 7 HOH HOH . I 4 HOH B 27 427 83 HOH HOH . I 4 HOH B 28 428 54 HOH HOH . I 4 HOH B 29 429 71 HOH HOH . I 4 HOH B 30 430 69 HOH HOH . I 4 HOH B 31 431 42 HOH HOH . I 4 HOH B 32 432 78 HOH HOH . I 4 HOH B 33 433 25 HOH HOH . I 4 HOH B 34 434 75 HOH HOH . I 4 HOH B 35 435 17 HOH HOH . I 4 HOH B 36 436 82 HOH HOH . J 4 HOH C 1 101 26 HOH HOH . J 4 HOH C 2 102 18 HOH HOH . J 4 HOH C 3 103 29 HOH HOH . J 4 HOH C 4 104 20 HOH HOH . J 4 HOH C 5 105 33 HOH HOH . J 4 HOH C 6 106 28 HOH HOH . J 4 HOH C 7 107 52 HOH HOH . J 4 HOH C 8 108 1 HOH HOH . J 4 HOH C 9 109 27 HOH HOH . J 4 HOH C 10 110 16 HOH HOH . J 4 HOH C 11 111 36 HOH HOH . J 4 HOH C 12 112 11 HOH HOH . J 4 HOH C 13 113 44 HOH HOH . J 4 HOH C 14 114 55 HOH HOH . J 4 HOH C 15 115 68 HOH HOH . J 4 HOH C 16 116 67 HOH HOH . J 4 HOH C 17 117 8 HOH HOH . J 4 HOH C 18 118 64 HOH HOH . K 4 HOH D 1 301 60 HOH HOH . K 4 HOH D 2 302 49 HOH HOH . K 4 HOH D 3 303 31 HOH HOH . K 4 HOH D 4 304 12 HOH HOH . K 4 HOH D 5 305 13 HOH HOH . K 4 HOH D 6 306 14 HOH HOH . K 4 HOH D 7 307 32 HOH HOH . K 4 HOH D 8 308 10 HOH HOH . K 4 HOH D 9 309 6 HOH HOH . K 4 HOH D 10 310 3 HOH HOH . K 4 HOH D 11 311 4 HOH HOH . K 4 HOH D 12 312 53 HOH HOH . K 4 HOH D 13 313 61 HOH HOH . K 4 HOH D 14 314 59 HOH HOH . K 4 HOH D 15 315 41 HOH HOH . K 4 HOH D 16 316 48 HOH HOH . K 4 HOH D 17 317 9 HOH HOH . K 4 HOH D 18 318 37 HOH HOH . K 4 HOH D 19 319 35 HOH HOH . K 4 HOH D 20 320 43 HOH HOH . K 4 HOH D 21 321 66 HOH HOH . K 4 HOH D 22 322 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 28.203 -10.697 7.053 1 85.85 ? C1 EDO 101 A 1 HETATM 2 O O1 EDO . . . E 3 28.65 -10.442 8.389 1 84.56 ? O1 EDO 101 A 1 HETATM 3 C C2 EDO . . . E 3 26.714 -10.387 6.96 1 85.8 ? C2 EDO 101 A 1 HETATM 4 O O2 EDO . . . E 3 26.264 -10.669 5.631 1 85.65 ? O2 EDO 101 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #