data_6WQH
#
_model_server_result.job_id            O27kXFYZKNVGJG7L6Zdk9g 
_model_server_result.datetime_utc      '2024-10-10 01:25:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wqh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":801}' 
#
_entry.id    6WQH 
#
_exptl.entry_id    6WQH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 679 A SER 678 1_555 I B29 4KZ . A 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 B OG SER 679 B SER 678 1_555 K B29 4KZ . B 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale3 C OG SER 679 C SER 678 1_555 M B29 4KZ . C 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale4 D OG SER 679 F SER 678 1_555 O B29 4KZ . F 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale5 E OG SER 679 D SER 678 1_555 Q B29 4KZ . D 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale6 F OG SER 679 E SER 678 1_555 R B29 4KZ . E 4KZ 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
_atom_sites.entry_id                     6WQH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 AGS A 1 801 801 AGS AGS . 
I 4 4KZ A 1 802 802 4KZ 4KZ . 
J 3 AGS B 1 801 801 AGS AGS . 
K 4 4KZ B 1 802 802 4KZ 4KZ . 
L 3 AGS C 1 801 801 AGS AGS . 
M 4 4KZ C 1 802 802 4KZ 4KZ . 
N 5 ADP F 1 801 801 ADP ADP . 
O 4 4KZ F 1 802 802 4KZ 4KZ . 
P 5 ADP D 1 801 801 ADP ADP . 
Q 4 4KZ D 1 802 802 4KZ 4KZ . 
R 4 4KZ E 1 801 802 4KZ 4KZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . H 3 119.002 84.352 123.597 1 92.32 ? PG AGS 801 A 1 
HETATM 2 S S1G AGS . . . H 3 118.118 84.497 125.325 1 92.32 ? S1G AGS 801 A 1 
HETATM 3 O O2G AGS . . . H 3 120.348 83.593 123.724 1 92.32 ? O2G AGS 801 A 1 
HETATM 4 O O3G AGS . . . H 3 119.247 85.764 122.997 1 92.32 ? O3G AGS 801 A 1 
HETATM 5 P PB AGS . . . H 3 118.921 82.899 121.431 1 92.32 ? PB AGS 801 A 1 
HETATM 6 O O1B AGS . . . H 3 120.284 83.459 121.386 1 92.32 ? O1B AGS 801 A 1 
HETATM 7 O O2B AGS . . . H 3 118.077 83.158 120.185 1 92.32 ? O2B AGS 801 A 1 
HETATM 8 O O3B AGS . . . H 3 118.129 83.557 122.604 1 92.32 ? O3B AGS 801 A 1 
HETATM 9 P PA AGS . . . H 3 120.076 80.756 122.566 1 92.32 ? PA AGS 801 A 1 
HETATM 10 O O1A AGS . . . H 3 119.638 80.793 123.965 1 92.32 ? O1A AGS 801 A 1 
HETATM 11 O O2A AGS . . . H 3 121.335 81.575 122.283 1 92.32 ? O2A AGS 801 A 1 
HETATM 12 O O3A AGS . . . H 3 118.974 81.341 121.619 1 92.32 ? O3A AGS 801 A 1 
HETATM 13 O O5' AGS . . . H 3 120.219 79.255 122.126 1 92.32 ? O5' AGS 801 A 1 
HETATM 14 C C5' AGS . . . H 3 120.228 78.207 123.101 1 92.32 ? C5' AGS 801 A 1 
HETATM 15 C C4' AGS . . . H 3 119.726 76.944 122.456 1 92.32 ? C4' AGS 801 A 1 
HETATM 16 O O4' AGS . . . H 3 120.67 76.504 121.455 1 92.32 ? O4' AGS 801 A 1 
HETATM 17 C C3' AGS . . . H 3 119.543 75.765 123.409 1 92.32 ? C3' AGS 801 A 1 
HETATM 18 O O3' AGS . . . H 3 118.425 74.98 123.015 1 92.32 ? O3' AGS 801 A 1 
HETATM 19 C C2' AGS . . . H 3 120.844 74.988 123.234 1 92.32 ? C2' AGS 801 A 1 
HETATM 20 O O2' AGS . . . H 3 120.679 73.61 123.539 1 92.32 ? O2' AGS 801 A 1 
HETATM 21 C C1' AGS . . . H 3 121.093 75.187 121.745 1 92.32 ? C1' AGS 801 A 1 
HETATM 22 N N9 AGS . . . H 3 122.487 75.054 121.348 1 92.32 ? N9 AGS 801 A 1 
HETATM 23 C C8 AGS . . . H 3 123.317 76.051 120.914 1 92.32 ? C8 AGS 801 A 1 
HETATM 24 N N7 AGS . . . H 3 124.529 75.649 120.622 1 92.32 ? N7 AGS 801 A 1 
HETATM 25 C C5 AGS . . . H 3 124.494 74.29 120.88 1 92.32 ? C5 AGS 801 A 1 
HETATM 26 C C6 AGS . . . H 3 125.467 73.283 120.776 1 92.32 ? C6 AGS 801 A 1 
HETATM 27 N N6 AGS . . . H 3 126.715 73.498 120.356 1 92.32 ? N6 AGS 801 A 1 
HETATM 28 N N1 AGS . . . H 3 125.106 72.026 121.109 1 92.32 ? N1 AGS 801 A 1 
HETATM 29 C C2 AGS . . . H 3 123.857 71.806 121.528 1 92.32 ? C2 AGS 801 A 1 
HETATM 30 N N3 AGS . . . H 3 122.855 72.676 121.671 1 92.32 ? N3 AGS 801 A 1 
HETATM 31 C C4 AGS . . . H 3 123.242 73.91 121.329 1 92.32 ? C4 AGS 801 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#