data_6WQH # _model_server_result.job_id 9bA4Z9BNnML-89ME1Ua6zg _model_server_result.datetime_utc '2024-10-10 01:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":801}' # _entry.id 6WQH # _exptl.entry_id 6WQH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 679 A SER 678 1_555 I B29 4KZ . A 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B OG SER 679 B SER 678 1_555 K B29 4KZ . B 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 C OG SER 679 C SER 678 1_555 M B29 4KZ . C 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 D OG SER 679 F SER 678 1_555 O B29 4KZ . F 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale5 E OG SER 679 D SER 678 1_555 Q B29 4KZ . D 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 F OG SER 679 E SER 678 1_555 R B29 4KZ . E 4KZ 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # _atom_sites.entry_id 6WQH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 AGS A 1 801 801 AGS AGS . I 4 4KZ A 1 802 802 4KZ 4KZ . J 3 AGS B 1 801 801 AGS AGS . K 4 4KZ B 1 802 802 4KZ 4KZ . L 3 AGS C 1 801 801 AGS AGS . M 4 4KZ C 1 802 802 4KZ 4KZ . N 5 ADP F 1 801 801 ADP ADP . O 4 4KZ F 1 802 802 4KZ 4KZ . P 5 ADP D 1 801 801 ADP ADP . Q 4 4KZ D 1 802 802 4KZ 4KZ . R 4 4KZ E 1 801 802 4KZ 4KZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . J 3 91.248 86.548 114.885 1 89.67 ? PG AGS 801 B 1 HETATM 2 S S1G AGS . . . J 3 90.577 88.159 114.032 1 89.67 ? S1G AGS 801 B 1 HETATM 3 O O2G AGS . . . J 3 90.972 86.589 116.412 1 89.67 ? O2G AGS 801 B 1 HETATM 4 O O3G AGS . . . J 3 92.777 86.41 114.66 1 89.67 ? O3G AGS 801 B 1 HETATM 5 P PB AGS . . . J 3 90.229 84.196 115.338 1 89.67 ? PB AGS 801 B 1 HETATM 6 O O1B AGS . . . J 3 91.15 84.365 116.47 1 89.67 ? O1B AGS 801 B 1 HETATM 7 O O2B AGS . . . J 3 90.381 82.864 114.605 1 89.67 ? O2B AGS 801 B 1 HETATM 8 O O3B AGS . . . J 3 90.527 85.315 114.293 1 89.67 ? O3B AGS 801 B 1 HETATM 9 P PA AGS . . . J 3 88.083 82.878 116.167 1 89.67 ? PA AGS 801 B 1 HETATM 10 O O1A AGS . . . J 3 87.205 82.967 117.348 1 89.67 ? O1A AGS 801 B 1 HETATM 11 O O2A AGS . . . J 3 89.257 81.908 116.298 1 89.67 ? O2A AGS 801 B 1 HETATM 12 O O3A AGS . . . J 3 88.737 84.255 115.811 1 89.67 ? O3A AGS 801 B 1 HETATM 13 O O5' AGS . . . J 3 87.203 82.566 114.91 1 89.67 ? O5' AGS 801 B 1 HETATM 14 C C5' AGS . . . J 3 86.576 81.292 114.735 1 89.67 ? C5' AGS 801 B 1 HETATM 15 C C4' AGS . . . J 3 85.089 81.473 114.847 1 89.67 ? C4' AGS 801 B 1 HETATM 16 O O4' AGS . . . J 3 84.426 80.369 114.196 1 89.67 ? O4' AGS 801 B 1 HETATM 17 C C3' AGS . . . J 3 84.553 81.501 116.274 1 89.67 ? C3' AGS 801 B 1 HETATM 18 O O3' AGS . . . J 3 83.402 82.331 116.358 1 89.67 ? O3' AGS 801 B 1 HETATM 19 C C2' AGS . . . J 3 84.192 80.039 116.519 1 89.67 ? C2' AGS 801 B 1 HETATM 20 O O2' AGS . . . J 3 83.158 79.914 117.488 1 89.67 ? O2' AGS 801 B 1 HETATM 21 C C1' AGS . . . J 3 83.689 79.62 115.14 1 89.67 ? C1' AGS 801 B 1 HETATM 22 N N9 AGS . . . J 3 83.867 78.204 114.848 1 89.67 ? N9 AGS 801 B 1 HETATM 23 C C8 AGS . . . J 3 83.028 77.18 115.199 1 89.67 ? C8 AGS 801 B 1 HETATM 24 N N7 AGS . . . J 3 83.436 75.999 114.808 1 89.67 ? N7 AGS 801 B 1 HETATM 25 C C5 AGS . . . J 3 84.628 76.263 114.153 1 89.67 ? C5 AGS 801 B 1 HETATM 26 C C6 AGS . . . J 3 85.559 75.429 113.512 1 89.67 ? C6 AGS 801 B 1 HETATM 27 N N6 AGS . . . J 3 85.425 74.106 113.409 1 89.67 ? N6 AGS 801 B 1 HETATM 28 N N1 AGS . . . J 3 86.639 76.012 112.955 1 89.67 ? N1 AGS 801 B 1 HETATM 29 C C2 AGS . . . J 3 86.776 77.336 113.049 1 89.67 ? C2 AGS 801 B 1 HETATM 30 N N3 AGS . . . J 3 85.971 78.223 113.635 1 89.67 ? N3 AGS 801 B 1 HETATM 31 C C4 AGS . . . J 3 84.905 77.618 114.171 1 89.67 ? C4 AGS 801 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #