data_6WQH # _model_server_result.job_id uLdGuIcLahYYYcC8lZs6XQ _model_server_result.datetime_utc '2024-10-10 01:16:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":801}' # _entry.id 6WQH # _exptl.entry_id 6WQH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 679 A SER 678 1_555 I B29 4KZ . A 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B OG SER 679 B SER 678 1_555 K B29 4KZ . B 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 C OG SER 679 C SER 678 1_555 M B29 4KZ . C 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 D OG SER 679 F SER 678 1_555 O B29 4KZ . F 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale5 E OG SER 679 D SER 678 1_555 Q B29 4KZ . D 4KZ 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 F OG SER 679 E SER 678 1_555 R B29 4KZ . E 4KZ 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WQH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 AGS A 1 801 801 AGS AGS . I 4 4KZ A 1 802 802 4KZ 4KZ . J 3 AGS B 1 801 801 AGS AGS . K 4 4KZ B 1 802 802 4KZ 4KZ . L 3 AGS C 1 801 801 AGS AGS . M 4 4KZ C 1 802 802 4KZ 4KZ . N 5 ADP F 1 801 801 ADP ADP . O 4 4KZ F 1 802 802 4KZ 4KZ . P 5 ADP D 1 801 801 ADP ADP . Q 4 4KZ D 1 802 802 4KZ 4KZ . R 4 4KZ E 1 801 802 4KZ 4KZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . N 5 139.687 108.619 122.698 1 168.04 ? PB ADP 801 F 1 HETATM 2 O O1B ADP . . . N 5 140.616 108.609 121.511 1 168.04 ? O1B ADP 801 F 1 HETATM 3 O O2B ADP . . . N 5 138.219 108.598 122.351 1 168.04 ? O2B ADP 801 F 1 HETATM 4 O O3B ADP . . . N 5 140.055 109.65 123.731 1 168.04 ? O3B ADP 801 F 1 HETATM 5 P PA ADP . . . N 5 140.995 106.845 124.536 1 168.04 ? PA ADP 801 F 1 HETATM 6 O O1A ADP . . . N 5 141.648 108.098 125.052 1 168.04 ? O1A ADP 801 F 1 HETATM 7 O O2A ADP . . . N 5 140.315 105.927 125.52 1 168.04 ? O2A ADP 801 F 1 HETATM 8 O O3A ADP . . . N 5 139.926 107.174 123.373 1 168.04 ? O3A ADP 801 F 1 HETATM 9 O O5' ADP . . . N 5 142.129 105.992 123.779 1 168.04 ? O5' ADP 801 F 1 HETATM 10 C C5' ADP . . . N 5 142.956 106.586 122.783 1 168.04 ? C5' ADP 801 F 1 HETATM 11 C C4' ADP . . . N 5 144.208 105.733 122.633 1 168.04 ? C4' ADP 801 F 1 HETATM 12 O O4' ADP . . . N 5 144.993 106.169 121.525 1 168.04 ? O4' ADP 801 F 1 HETATM 13 C C3' ADP . . . N 5 145.091 105.825 123.862 1 168.04 ? C3' ADP 801 F 1 HETATM 14 O O3' ADP . . . N 5 145.186 104.532 124.456 1 168.04 ? O3' ADP 801 F 1 HETATM 15 C C2' ADP . . . N 5 146.458 106.242 123.368 1 168.04 ? C2' ADP 801 F 1 HETATM 16 O O2' ADP . . . N 5 147.451 105.352 123.881 1 168.04 ? O2' ADP 801 F 1 HETATM 17 C C1' ADP . . . N 5 146.379 106.136 121.858 1 168.04 ? C1' ADP 801 F 1 HETATM 18 N N9 ADP . . . N 5 147.039 107.293 121.22 1 168.04 ? N9 ADP 801 F 1 HETATM 19 C C8 ADP . . . N 5 146.398 108.236 120.518 1 168.04 ? C8 ADP 801 F 1 HETATM 20 N N7 ADP . . . N 5 147.261 109.166 120.048 1 168.04 ? N7 ADP 801 F 1 HETATM 21 C C5 ADP . . . N 5 148.491 108.814 120.446 1 168.04 ? C5 ADP 801 F 1 HETATM 22 C C6 ADP . . . N 5 149.85 109.366 120.282 1 168.04 ? C6 ADP 801 F 1 HETATM 23 N N6 ADP . . . N 5 150.067 110.503 119.585 1 168.04 ? N6 ADP 801 F 1 HETATM 24 N N1 ADP . . . N 5 150.864 108.693 120.858 1 168.04 ? N1 ADP 801 F 1 HETATM 25 C C2 ADP . . . N 5 150.653 107.56 121.55 1 168.04 ? C2 ADP 801 F 1 HETATM 26 N N3 ADP . . . N 5 149.446 107.001 121.737 1 168.04 ? N3 ADP 801 F 1 HETATM 27 C C4 ADP . . . N 5 148.341 107.572 121.214 1 168.04 ? C4 ADP 801 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #