data_6WRF
#
_model_server_result.job_id            hEVUfubmhyw-U1btvlWWYA 
_model_server_result.datetime_utc      '2024-10-19 13:32:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wrf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":600}' 
#
_entry.id    6WRF 
#
_exptl.entry_id    6WRF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             W 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 90 B THR 126 1_555 P MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc2 O O2G AGS . B AGS 501 1_555 P MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc3 O O2B AGS . B AGS 501 1_555 P MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc4 B OG1 THR 90 C THR 126 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc5 B OD2 ASP 148 C ASP 184 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc6 Q O2G AGS . C AGS 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc7 Q O2B AGS . C AGS 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc8 C OG1 THR 90 D THR 126 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc9 C OD2 ASP 148 D ASP 184 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc10 S O2G AGS . D AGS 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc11 S O2B AGS . D AGS 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc12 D OD1 ASP 148 E ASP 184 1_555 V MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc13 D OD2 ASP 148 E ASP 184 1_555 V MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc14 U O2G AGS . E AGS 501 1_555 V MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc15 N OG1 THR 90 A THR 126 1_555 Y MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc16 N OD1 ASP 148 A ASP 184 1_555 Y MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc17 N OD2 ASP 148 A ASP 184 1_555 Y MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6WRF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 4 AGS B 1 501 600 AGS AGS . 
P 5 MG B 1 502 2 MG MG . 
Q 4 AGS C 1 501 600 AGS AGS . 
R 5 MG C 1 502 3 MG MG . 
S 4 AGS D 1 501 600 AGS AGS . 
T 5 MG D 1 502 4 MG MG . 
U 4 AGS E 1 501 600 AGS AGS . 
V 5 MG E 1 502 5 MG MG . 
W 6 ADP F 1 600 600 ADP ADP . 
X 4 AGS A 1 501 600 AGS AGS . 
Y 5 MG A 1 502 1 MG MG . 
Z 7 HOH H 1 301 6 HOH HOH . 
AA 7 HOH I 1 301 5 HOH HOH . 
BA 7 HOH J 1 301 4 HOH HOH . 
CA 7 HOH K 1 301 3 HOH HOH . 
DA 7 HOH L 1 301 2 HOH HOH . 
EA 7 HOH M 1 301 1 HOH HOH . 
FA 7 HOH N 1 301 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . W 6 143.678 184.092 124.237 1 58.69 ? PB ADP 600 F 1 
HETATM 2 O O1B ADP . . . W 6 144.372 183.587 122.998 1 58.69 -1 O1B ADP 600 F 1 
HETATM 3 O O2B ADP . . . W 6 143.7 185.587 124.409 1 58.69 ? O2B ADP 600 F 1 
HETATM 4 O O3B ADP . . . W 6 143.969 183.295 125.483 1 58.69 ? O3B ADP 600 F 1 
HETATM 5 P PA ADP . . . W 6 141.452 184.679 122.76 1 58.69 ? PA ADP 600 F 1 
HETATM 6 O O1A ADP . . . W 6 142.221 184.385 121.504 1 58.69 ? O1A ADP 600 F 1 
HETATM 7 O O2A ADP . . . W 6 141.295 186.101 123.229 1 58.69 -1 O2A ADP 600 F 1 
HETATM 8 O O3A ADP . . . W 6 142.128 183.833 123.939 1 58.69 ? O3A ADP 600 F 1 
HETATM 9 O O5' ADP . . . W 6 140.013 183.985 122.623 1 58.69 ? O5' ADP 600 F 1 
HETATM 10 C C5' ADP . . . W 6 139.409 183.922 121.341 1 58.69 ? C5' ADP 600 F 1 
HETATM 11 C C4' ADP . . . W 6 138.028 183.278 121.442 1 58.69 ? C4' ADP 600 F 1 
HETATM 12 O O4' ADP . . . W 6 137.276 183.87 122.499 1 58.69 ? O4' ADP 600 F 1 
HETATM 13 C C3' ADP . . . W 6 137.216 183.431 120.167 1 58.69 ? C3' ADP 600 F 1 
HETATM 14 O O3' ADP . . . W 6 136.681 182.17 119.76 1 58.69 ? O3' ADP 600 F 1 
HETATM 15 C C2' ADP . . . W 6 136.102 184.393 120.504 1 58.69 ? C2' ADP 600 F 1 
HETATM 16 O O2' ADP . . . W 6 134.843 183.924 120.028 1 58.69 ? O2' ADP 600 F 1 
HETATM 17 C C1' ADP . . . W 6 136.082 184.489 122.016 1 58.69 ? C1' ADP 600 F 1 
HETATM 18 N N9 ADP . . . W 6 136.06 185.894 122.495 1 58.69 ? N9 ADP 600 F 1 
HETATM 19 C C8 ADP . . . W 6 136.91 186.393 123.41 1 58.69 ? C8 ADP 600 F 1 
HETATM 20 N N7 ADP . . . W 6 136.654 187.693 123.662 1 58.69 ? N7 ADP 600 F 1 
HETATM 21 C C5 ADP . . . W 6 135.619 188.037 122.894 1 58.69 ? C5 ADP 600 F 1 
HETATM 22 C C6 ADP . . . W 6 134.86 189.27 122.683 1 58.69 ? C6 ADP 600 F 1 
HETATM 23 N N6 ADP . . . W 6 135.212 190.366 123.379 1 58.69 ? N6 ADP 600 F 1 
HETATM 24 N N1 ADP . . . W 6 133.846 189.251 121.8 1 58.69 ? N1 ADP 600 F 1 
HETATM 25 C C2 ADP . . . W 6 133.526 188.135 121.124 1 58.69 ? C2 ADP 600 F 1 
HETATM 26 N N3 ADP . . . W 6 134.183 186.971 121.272 1 58.69 ? N3 ADP 600 F 1 
HETATM 27 C C4 ADP . . . W 6 135.217 186.859 122.132 1 58.69 ? C4 ADP 600 F 1 
HETATM 28 H "H5'1" ADP . . . W 6 140.049 183.34 120.679 1 58.69 ? "H5'1" ADP 600 F 1 
HETATM 29 H "H5'2" ADP . . . W 6 139.337 184.928 120.93 1 58.69 ? "H5'2" ADP 600 F 1 
HETATM 30 H H4' ADP . . . W 6 138.164 182.212 121.648 1 58.69 ? H4' ADP 600 F 1 
HETATM 31 H H3' ADP . . . W 6 137.843 183.862 119.378 1 58.69 ? H3' ADP 600 F 1 
HETATM 32 H HO3' ADP . . . W 6 136.308 182.246 118.873 1 58.69 ? HO3' ADP 600 F 1 
HETATM 33 H H2' ADP . . . W 6 136.338 185.364 120.059 1 58.69 ? H2' ADP 600 F 1 
HETATM 34 H HO2' ADP . . . W 6 134.819 184.018 119.069 1 58.69 ? HO2' ADP 600 F 1 
HETATM 35 H H1' ADP . . . W 6 135.201 183.951 122.377 1 58.69 ? H1' ADP 600 F 1 
HETATM 36 H H8 ADP . . . W 6 137.696 185.832 123.887 1 58.69 ? H8 ADP 600 F 1 
HETATM 37 H HN61 ADP . . . W 6 135.981 190.326 124.029 1 58.69 ? HN61 ADP 600 F 1 
HETATM 38 H HN62 ADP . . . W 6 134.709 191.218 123.25 1 58.69 ? HN62 ADP 600 F 1 
HETATM 39 H H2 ADP . . . W 6 132.701 188.174 120.428 1 58.69 ? H2 ADP 600 F 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    143 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           39 
#