data_6WRK # _model_server_result.job_id lLYaG7xq_TOTN6ff8D8MYQ _model_server_result.datetime_utc '2024-11-24 01:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wrk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6WRK # _exptl.entry_id 6WRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WRK _cell.length_a 101.43 _cell.length_b 101.43 _cell.length_c 71.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 101.43 101.43 -35.75 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 27 A ASP 27 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A O PRO 144 A PRO 144 1_555 D NA NA . A NA 403 5_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc3 D NA NA . A NA 403 1_555 H O HOH . A HOH 649 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WRK _atom_sites.fract_transf_matrix[1][1] 0.009859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 402 GOL GOL . C 2 GOL A 1 402 403 GOL GOL . D 3 NA A 1 403 404 NA NA . E 4 NIY A 1 404 1 NIY NIY . F 4 NIY A 1 405 3 NIY NIY . G 2 GOL A 1 406 1 GOL GOL . H 5 HOH A 1 501 65 HOH HOH . H 5 HOH A 2 502 156 HOH HOH . H 5 HOH A 3 503 173 HOH HOH . H 5 HOH A 4 504 51 HOH HOH . H 5 HOH A 5 505 152 HOH HOH . H 5 HOH A 6 506 76 HOH HOH . H 5 HOH A 7 507 157 HOH HOH . H 5 HOH A 8 508 141 HOH HOH . H 5 HOH A 9 509 103 HOH HOH . H 5 HOH A 10 510 6 HOH HOH . H 5 HOH A 11 511 86 HOH HOH . H 5 HOH A 12 512 48 HOH HOH . H 5 HOH A 13 513 55 HOH HOH . H 5 HOH A 14 514 145 HOH HOH . H 5 HOH A 15 515 75 HOH HOH . H 5 HOH A 16 516 119 HOH HOH . H 5 HOH A 17 517 42 HOH HOH . H 5 HOH A 18 518 10 HOH HOH . H 5 HOH A 19 519 95 HOH HOH . H 5 HOH A 20 520 19 HOH HOH . H 5 HOH A 21 521 22 HOH HOH . H 5 HOH A 22 522 164 HOH HOH . H 5 HOH A 23 523 124 HOH HOH . H 5 HOH A 24 524 5 HOH HOH . H 5 HOH A 25 525 2 HOH HOH . H 5 HOH A 26 526 112 HOH HOH . H 5 HOH A 27 527 43 HOH HOH . H 5 HOH A 28 528 82 HOH HOH . H 5 HOH A 29 529 85 HOH HOH . H 5 HOH A 30 530 69 HOH HOH . H 5 HOH A 31 531 66 HOH HOH . H 5 HOH A 32 532 49 HOH HOH . H 5 HOH A 33 533 21 HOH HOH . H 5 HOH A 34 534 4 HOH HOH . H 5 HOH A 35 535 61 HOH HOH . H 5 HOH A 36 536 106 HOH HOH . H 5 HOH A 37 537 87 HOH HOH . H 5 HOH A 38 538 24 HOH HOH . H 5 HOH A 39 539 56 HOH HOH . H 5 HOH A 40 540 25 HOH HOH . H 5 HOH A 41 541 28 HOH HOH . H 5 HOH A 42 542 12 HOH HOH . H 5 HOH A 43 543 111 HOH HOH . H 5 HOH A 44 544 14 HOH HOH . H 5 HOH A 45 545 3 HOH HOH . H 5 HOH A 46 546 7 HOH HOH . H 5 HOH A 47 547 1 HOH HOH . H 5 HOH A 48 548 170 HOH HOH . H 5 HOH A 49 549 41 HOH HOH . H 5 HOH A 50 550 108 HOH HOH . H 5 HOH A 51 551 80 HOH HOH . H 5 HOH A 52 552 160 HOH HOH . H 5 HOH A 53 553 68 HOH HOH . H 5 HOH A 54 554 16 HOH HOH . H 5 HOH A 55 555 13 HOH HOH . H 5 HOH A 56 556 44 HOH HOH . H 5 HOH A 57 557 37 HOH HOH . H 5 HOH A 58 558 17 HOH HOH . H 5 HOH A 59 559 39 HOH HOH . H 5 HOH A 60 560 32 HOH HOH . H 5 HOH A 61 561 125 HOH HOH . H 5 HOH A 62 562 50 HOH HOH . H 5 HOH A 63 563 11 HOH HOH . H 5 HOH A 64 564 93 HOH HOH . H 5 HOH A 65 565 23 HOH HOH . H 5 HOH A 66 566 53 HOH HOH . H 5 HOH A 67 567 27 HOH HOH . H 5 HOH A 68 568 59 HOH HOH . H 5 HOH A 69 569 40 HOH HOH . H 5 HOH A 70 570 47 HOH HOH . H 5 HOH A 71 571 123 HOH HOH . H 5 HOH A 72 572 54 HOH HOH . H 5 HOH A 73 573 8 HOH HOH . H 5 HOH A 74 574 97 HOH HOH . H 5 HOH A 75 575 132 HOH HOH . H 5 HOH A 76 576 9 HOH HOH . H 5 HOH A 77 577 113 HOH HOH . H 5 HOH A 78 578 58 HOH HOH . H 5 HOH A 79 579 31 HOH HOH . H 5 HOH A 80 580 30 HOH HOH . H 5 HOH A 81 581 62 HOH HOH . H 5 HOH A 82 582 79 HOH HOH . H 5 HOH A 83 583 34 HOH HOH . H 5 HOH A 84 584 116 HOH HOH . H 5 HOH A 85 585 117 HOH HOH . H 5 HOH A 86 586 38 HOH HOH . H 5 HOH A 87 587 115 HOH HOH . H 5 HOH A 88 588 72 HOH HOH . H 5 HOH A 89 589 63 HOH HOH . H 5 HOH A 90 590 29 HOH HOH . H 5 HOH A 91 591 133 HOH HOH . H 5 HOH A 92 592 131 HOH HOH . H 5 HOH A 93 593 64 HOH HOH . H 5 HOH A 94 594 33 HOH HOH . H 5 HOH A 95 595 70 HOH HOH . H 5 HOH A 96 596 114 HOH HOH . H 5 HOH A 97 597 60 HOH HOH . H 5 HOH A 98 598 126 HOH HOH . H 5 HOH A 99 599 101 HOH HOH . H 5 HOH A 100 600 71 HOH HOH . H 5 HOH A 101 601 143 HOH HOH . H 5 HOH A 102 602 67 HOH HOH . H 5 HOH A 103 603 136 HOH HOH . H 5 HOH A 104 604 161 HOH HOH . H 5 HOH A 105 605 104 HOH HOH . H 5 HOH A 106 606 155 HOH HOH . H 5 HOH A 107 607 26 HOH HOH . H 5 HOH A 108 608 45 HOH HOH . H 5 HOH A 109 609 110 HOH HOH . H 5 HOH A 110 610 129 HOH HOH . H 5 HOH A 111 611 128 HOH HOH . H 5 HOH A 112 612 162 HOH HOH . H 5 HOH A 113 613 100 HOH HOH . H 5 HOH A 114 614 74 HOH HOH . H 5 HOH A 115 615 122 HOH HOH . H 5 HOH A 116 616 18 HOH HOH . H 5 HOH A 117 617 90 HOH HOH . H 5 HOH A 118 618 52 HOH HOH . H 5 HOH A 119 619 163 HOH HOH . H 5 HOH A 120 620 144 HOH HOH . H 5 HOH A 121 621 138 HOH HOH . H 5 HOH A 122 622 172 HOH HOH . H 5 HOH A 123 623 94 HOH HOH . H 5 HOH A 124 624 140 HOH HOH . H 5 HOH A 125 625 142 HOH HOH . H 5 HOH A 126 626 120 HOH HOH . H 5 HOH A 127 627 147 HOH HOH . H 5 HOH A 128 628 98 HOH HOH . H 5 HOH A 129 629 153 HOH HOH . H 5 HOH A 130 630 169 HOH HOH . H 5 HOH A 131 631 150 HOH HOH . H 5 HOH A 132 632 146 HOH HOH . H 5 HOH A 133 633 168 HOH HOH . H 5 HOH A 134 634 135 HOH HOH . H 5 HOH A 135 635 96 HOH HOH . H 5 HOH A 136 636 78 HOH HOH . H 5 HOH A 137 637 139 HOH HOH . H 5 HOH A 138 638 134 HOH HOH . H 5 HOH A 139 639 148 HOH HOH . H 5 HOH A 140 640 158 HOH HOH . H 5 HOH A 141 641 149 HOH HOH . H 5 HOH A 142 642 102 HOH HOH . H 5 HOH A 143 643 174 HOH HOH . H 5 HOH A 144 644 89 HOH HOH . H 5 HOH A 145 645 165 HOH HOH . H 5 HOH A 146 646 35 HOH HOH . H 5 HOH A 147 647 91 HOH HOH . H 5 HOH A 148 648 130 HOH HOH . H 5 HOH A 149 649 92 HOH HOH . H 5 HOH A 150 650 151 HOH HOH . H 5 HOH A 151 651 159 HOH HOH . H 5 HOH A 152 652 167 HOH HOH . H 5 HOH A 153 653 88 HOH HOH . H 5 HOH A 154 654 118 HOH HOH . H 5 HOH A 155 655 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 79.196 _atom_site.Cartn_y 71.714 _atom_site.Cartn_z -3.516 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #