data_6WRK # _model_server_result.job_id vT8dIGhTFqLgBgs0WOH2yw _model_server_result.datetime_utc '2024-11-13 15:36:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wrk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6WRK # _exptl.entry_id 6WRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.186 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description META-NITRO-TYROSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WRK _cell.length_a 101.43 _cell.length_b 101.43 _cell.length_c 71.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 101.43 101.43 -35.75 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 27 A ASP 27 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A O PRO 144 A PRO 144 1_555 D NA NA . A NA 403 5_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc3 D NA NA . A NA 403 1_555 H O HOH . A HOH 649 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? # _chem_comp.formula 'C9 H10 N2 O5' _chem_comp.formula_weight 226.186 _chem_comp.id NIY _chem_comp.mon_nstd_flag n _chem_comp.name META-NITRO-TYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA NIY sing 250 n n N H NIY sing 251 n n N H2 NIY sing 252 n n CA C NIY sing 253 n n CA CB NIY sing 254 n n CA HA NIY sing 255 n n C O NIY doub 256 n n C OXT NIY sing 257 n n CB CG NIY sing 258 n n CB HB2 NIY sing 259 n n CB HB3 NIY sing 260 n n CG CD1 NIY doub 261 n y CG CD2 NIY sing 262 n y CD1 CE1 NIY sing 263 n y CD1 HD1 NIY sing 264 n n CD2 CE2 NIY doub 265 n y CD2 HD2 NIY sing 266 n n CE1 CZ NIY doub 267 n y CE1 NN NIY sing 268 n n CE2 CZ NIY sing 269 n y CE2 HE2 NIY sing 270 n n CZ OH NIY sing 271 n n OH HH NIY sing 272 n n NN O1 NIY sing 273 n n NN O2 NIY doub 274 n n OXT HXT NIY sing 275 n n # _atom_sites.entry_id 6WRK _atom_sites.fract_transf_matrix[1][1] 0.009859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 402 GOL GOL . C 2 GOL A 1 402 403 GOL GOL . D 3 NA A 1 403 404 NA NA . E 4 NIY A 1 404 1 NIY NIY . F 4 NIY A 1 405 3 NIY NIY . G 2 GOL A 1 406 1 GOL GOL . H 5 HOH A 1 501 65 HOH HOH . H 5 HOH A 2 502 156 HOH HOH . H 5 HOH A 3 503 173 HOH HOH . H 5 HOH A 4 504 51 HOH HOH . H 5 HOH A 5 505 152 HOH HOH . H 5 HOH A 6 506 76 HOH HOH . H 5 HOH A 7 507 157 HOH HOH . H 5 HOH A 8 508 141 HOH HOH . H 5 HOH A 9 509 103 HOH HOH . H 5 HOH A 10 510 6 HOH HOH . H 5 HOH A 11 511 86 HOH HOH . H 5 HOH A 12 512 48 HOH HOH . H 5 HOH A 13 513 55 HOH HOH . H 5 HOH A 14 514 145 HOH HOH . H 5 HOH A 15 515 75 HOH HOH . H 5 HOH A 16 516 119 HOH HOH . H 5 HOH A 17 517 42 HOH HOH . H 5 HOH A 18 518 10 HOH HOH . H 5 HOH A 19 519 95 HOH HOH . H 5 HOH A 20 520 19 HOH HOH . H 5 HOH A 21 521 22 HOH HOH . H 5 HOH A 22 522 164 HOH HOH . H 5 HOH A 23 523 124 HOH HOH . H 5 HOH A 24 524 5 HOH HOH . H 5 HOH A 25 525 2 HOH HOH . H 5 HOH A 26 526 112 HOH HOH . H 5 HOH A 27 527 43 HOH HOH . H 5 HOH A 28 528 82 HOH HOH . H 5 HOH A 29 529 85 HOH HOH . H 5 HOH A 30 530 69 HOH HOH . H 5 HOH A 31 531 66 HOH HOH . H 5 HOH A 32 532 49 HOH HOH . H 5 HOH A 33 533 21 HOH HOH . H 5 HOH A 34 534 4 HOH HOH . H 5 HOH A 35 535 61 HOH HOH . H 5 HOH A 36 536 106 HOH HOH . H 5 HOH A 37 537 87 HOH HOH . H 5 HOH A 38 538 24 HOH HOH . H 5 HOH A 39 539 56 HOH HOH . H 5 HOH A 40 540 25 HOH HOH . H 5 HOH A 41 541 28 HOH HOH . H 5 HOH A 42 542 12 HOH HOH . H 5 HOH A 43 543 111 HOH HOH . H 5 HOH A 44 544 14 HOH HOH . H 5 HOH A 45 545 3 HOH HOH . H 5 HOH A 46 546 7 HOH HOH . H 5 HOH A 47 547 1 HOH HOH . H 5 HOH A 48 548 170 HOH HOH . H 5 HOH A 49 549 41 HOH HOH . H 5 HOH A 50 550 108 HOH HOH . H 5 HOH A 51 551 80 HOH HOH . H 5 HOH A 52 552 160 HOH HOH . H 5 HOH A 53 553 68 HOH HOH . H 5 HOH A 54 554 16 HOH HOH . H 5 HOH A 55 555 13 HOH HOH . H 5 HOH A 56 556 44 HOH HOH . H 5 HOH A 57 557 37 HOH HOH . H 5 HOH A 58 558 17 HOH HOH . H 5 HOH A 59 559 39 HOH HOH . H 5 HOH A 60 560 32 HOH HOH . H 5 HOH A 61 561 125 HOH HOH . H 5 HOH A 62 562 50 HOH HOH . H 5 HOH A 63 563 11 HOH HOH . H 5 HOH A 64 564 93 HOH HOH . H 5 HOH A 65 565 23 HOH HOH . H 5 HOH A 66 566 53 HOH HOH . H 5 HOH A 67 567 27 HOH HOH . H 5 HOH A 68 568 59 HOH HOH . H 5 HOH A 69 569 40 HOH HOH . H 5 HOH A 70 570 47 HOH HOH . H 5 HOH A 71 571 123 HOH HOH . H 5 HOH A 72 572 54 HOH HOH . H 5 HOH A 73 573 8 HOH HOH . H 5 HOH A 74 574 97 HOH HOH . H 5 HOH A 75 575 132 HOH HOH . H 5 HOH A 76 576 9 HOH HOH . H 5 HOH A 77 577 113 HOH HOH . H 5 HOH A 78 578 58 HOH HOH . H 5 HOH A 79 579 31 HOH HOH . H 5 HOH A 80 580 30 HOH HOH . H 5 HOH A 81 581 62 HOH HOH . H 5 HOH A 82 582 79 HOH HOH . H 5 HOH A 83 583 34 HOH HOH . H 5 HOH A 84 584 116 HOH HOH . H 5 HOH A 85 585 117 HOH HOH . H 5 HOH A 86 586 38 HOH HOH . H 5 HOH A 87 587 115 HOH HOH . H 5 HOH A 88 588 72 HOH HOH . H 5 HOH A 89 589 63 HOH HOH . H 5 HOH A 90 590 29 HOH HOH . H 5 HOH A 91 591 133 HOH HOH . H 5 HOH A 92 592 131 HOH HOH . H 5 HOH A 93 593 64 HOH HOH . H 5 HOH A 94 594 33 HOH HOH . H 5 HOH A 95 595 70 HOH HOH . H 5 HOH A 96 596 114 HOH HOH . H 5 HOH A 97 597 60 HOH HOH . H 5 HOH A 98 598 126 HOH HOH . H 5 HOH A 99 599 101 HOH HOH . H 5 HOH A 100 600 71 HOH HOH . H 5 HOH A 101 601 143 HOH HOH . H 5 HOH A 102 602 67 HOH HOH . H 5 HOH A 103 603 136 HOH HOH . H 5 HOH A 104 604 161 HOH HOH . H 5 HOH A 105 605 104 HOH HOH . H 5 HOH A 106 606 155 HOH HOH . H 5 HOH A 107 607 26 HOH HOH . H 5 HOH A 108 608 45 HOH HOH . H 5 HOH A 109 609 110 HOH HOH . H 5 HOH A 110 610 129 HOH HOH . H 5 HOH A 111 611 128 HOH HOH . H 5 HOH A 112 612 162 HOH HOH . H 5 HOH A 113 613 100 HOH HOH . H 5 HOH A 114 614 74 HOH HOH . H 5 HOH A 115 615 122 HOH HOH . H 5 HOH A 116 616 18 HOH HOH . H 5 HOH A 117 617 90 HOH HOH . H 5 HOH A 118 618 52 HOH HOH . H 5 HOH A 119 619 163 HOH HOH . H 5 HOH A 120 620 144 HOH HOH . H 5 HOH A 121 621 138 HOH HOH . H 5 HOH A 122 622 172 HOH HOH . H 5 HOH A 123 623 94 HOH HOH . H 5 HOH A 124 624 140 HOH HOH . H 5 HOH A 125 625 142 HOH HOH . H 5 HOH A 126 626 120 HOH HOH . H 5 HOH A 127 627 147 HOH HOH . H 5 HOH A 128 628 98 HOH HOH . H 5 HOH A 129 629 153 HOH HOH . H 5 HOH A 130 630 169 HOH HOH . H 5 HOH A 131 631 150 HOH HOH . H 5 HOH A 132 632 146 HOH HOH . H 5 HOH A 133 633 168 HOH HOH . H 5 HOH A 134 634 135 HOH HOH . H 5 HOH A 135 635 96 HOH HOH . H 5 HOH A 136 636 78 HOH HOH . H 5 HOH A 137 637 139 HOH HOH . H 5 HOH A 138 638 134 HOH HOH . H 5 HOH A 139 639 148 HOH HOH . H 5 HOH A 140 640 158 HOH HOH . H 5 HOH A 141 641 149 HOH HOH . H 5 HOH A 142 642 102 HOH HOH . H 5 HOH A 143 643 174 HOH HOH . H 5 HOH A 144 644 89 HOH HOH . H 5 HOH A 145 645 165 HOH HOH . H 5 HOH A 146 646 35 HOH HOH . H 5 HOH A 147 647 91 HOH HOH . H 5 HOH A 148 648 130 HOH HOH . H 5 HOH A 149 649 92 HOH HOH . H 5 HOH A 150 650 151 HOH HOH . H 5 HOH A 151 651 159 HOH HOH . H 5 HOH A 152 652 167 HOH HOH . H 5 HOH A 153 653 88 HOH HOH . H 5 HOH A 154 654 118 HOH HOH . H 5 HOH A 155 655 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NIY . . . F 4 79.839 27.029 -1.775 1 113.14 ? N NIY 405 A 1 HETATM 2 C CA NIY . . . F 4 79.114 27.734 -0.675 1 102.76 ? CA NIY 405 A 1 HETATM 3 C C NIY . . . F 4 78.953 26.803 0.484 1 103.18 ? C NIY 405 A 1 HETATM 4 O O NIY . . . F 4 77.868 26.219 0.646 1 95.74 ? O NIY 405 A 1 HETATM 5 C CB NIY . . . F 4 77.765 28.277 -1.095 1 85.2 ? CB NIY 405 A 1 HETATM 6 C CG NIY . . . F 4 76.96 28.771 0.09 1 76.34 ? CG NIY 405 A 1 HETATM 7 C CD1 NIY . . . F 4 75.577 28.781 0.058 1 73.17 ? CD1 NIY 405 A 1 HETATM 8 C CD2 NIY . . . F 4 77.584 29.246 1.205 1 84.17 ? CD2 NIY 405 A 1 HETATM 9 C CE1 NIY . . . F 4 74.838 29.225 1.147 1 94.16 ? CE1 NIY 405 A 1 HETATM 10 C CE2 NIY . . . F 4 76.876 29.692 2.296 1 69.77 ? CE2 NIY 405 A 1 HETATM 11 C CZ NIY . . . F 4 75.494 29.683 2.288 1 90.11 ? CZ NIY 405 A 1 HETATM 12 O OH NIY . . . F 4 74.772 30.134 3.354 0.89 58.42 ? OH NIY 405 A 1 HETATM 13 N NN NIY . . . F 4 73.436 29.189 1.094 1 93.36 ? NN NIY 405 A 1 HETATM 14 O O1 NIY . . . F 4 72.901 28.525 0.264 1 86.59 ? O1 NIY 405 A 1 HETATM 15 O O2 NIY . . . F 4 72.725 29.778 1.84 1 104.33 ? O2 NIY 405 A 1 HETATM 16 O OXT NIY . . . F 4 79.919 26.594 1.217 1 115.22 ? OXT NIY 405 A 1 HETATM 17 H H2 NIY . . . F 4 79.303 26.211 -2.118 1 135.76 ? H2 NIY 405 A 1 HETATM 18 H H NIY . . . F 4 79.951 27.689 -2.563 1 135.76 ? H NIY 405 A 1 HETATM 19 H HA NIY . . . F 4 79.69 28.661 -0.459 1 123.31 ? HA NIY 405 A 1 HETATM 20 H HB2 NIY . . . F 4 77.928 29.117 -1.774 1 102.24 ? HB2 NIY 405 A 1 HETATM 21 H HB3 NIY . . . F 4 77.201 27.515 -1.661 1 102.24 ? HB3 NIY 405 A 1 HETATM 22 H HD1 NIY . . . F 4 75.092 28.391 -0.848 1 87.8 ? HD1 NIY 405 A 1 HETATM 23 H HD2 NIY . . . F 4 78.667 29.257 1.25 1 101 ? HD2 NIY 405 A 1 HETATM 24 H HE2 NIY . . . F 4 77.45 30.046 3.151 1 83.72 ? HE2 NIY 405 A 1 HETATM 25 H HH NIY . . . F 4 74.354 29.385 3.8 1 70.1 ? HH NIY 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 25 #