data_6WRM # _model_server_result.job_id Dn3ygdUlqIC0nE6Ey0Xrsg _model_server_result.datetime_utc '2024-11-26 01:58:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wrm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6WRM # _exptl.entry_id 6WRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.256 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-{2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}-1,3-dimethyl-2,3-dihydro-1H-imidazol-2-yl)rhodium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WRM _cell.length_a 80.952 _cell.length_b 80.952 _cell.length_c 35.824 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 E RH1 RH . A RH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A NZ LYS 33 A LYS 33 1_555 F RH01 U8G . A U8G 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A NZ LYS 33 A LYS 33 1_555 F RH01 U8G . A U8G 205 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc6 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc7 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc8 B NA NA . A NA 201 1_555 G O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc9 B NA NA . A NA 201 1_555 G O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 E RH1 RH . A RH 204 1_555 G O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc11 E RH1 RH . A RH 204 1_555 G O HOH . A HOH 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc12 E RH1 RH . A RH 204 1_555 G O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc13 F RH01 U8G . A U8G 205 1_555 G O HOH . A HOH 382 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.537 ? metalc ? metalc14 F RH01 U8G . A U8G 205 1_555 G O HOH . A HOH 389 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.255 ? metalc ? metalc15 F RH01 U8G . A U8G 205 1_555 G O HOH . A HOH 389 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.641 ? # _chem_comp.formula 'C14 H23 N3 O4 Rh' _chem_comp.formula_weight 400.256 _chem_comp.id U8G _chem_comp.mon_nstd_flag . _chem_comp.name (4-{2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}-1,3-dimethyl-2,3-dihydro-1H-imidazol-2-yl)rhodium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C43 C42 U8G sing 358 n n C40 C42 U8G doub 359 n y C40 N07 U8G sing 360 n y C42 N04 U8G sing 361 n y N07 C36 U8G sing 362 n n N07 C31 U8G doub 363 n y N04 C32 U8G sing 364 n n N04 C31 U8G sing 365 n y C31 RH01 U8G sing 366 n n C32 H1 U8G sing 367 n n C32 H2 U8G sing 368 n n C32 H3 U8G sing 369 n n C36 H4 U8G sing 370 n n C36 H5 U8G sing 371 n n C36 H6 U8G sing 372 n n C40 H7 U8G sing 373 n n C43 H8 U8G sing 374 n n C43 H9 U8G sing 375 n n C43 C1 U8G sing 376 n n C1 C2 U8G sing 377 n n C1 N1 U8G sing 378 n n N1 C4 U8G sing 379 n n C2 O2 U8G sing 380 n n C2 O1 U8G doub 381 n n O2 C7 U8G sing 382 n n C4 O3 U8G sing 383 n n C4 O4 U8G doub 384 n n O3 C6 U8G sing 385 n n C6 C8 U8G sing 386 n n C6 C9 U8G sing 387 n n C6 C10 U8G sing 388 n n C1 H10 U8G sing 389 n n N1 H12 U8G sing 390 n n C7 H13 U8G sing 391 n n C7 H14 U8G sing 392 n n C7 H15 U8G sing 393 n n C8 H16 U8G sing 394 n n C8 H17 U8G sing 395 n n C8 H18 U8G sing 396 n n C9 H19 U8G sing 397 n n C9 H20 U8G sing 398 n n C9 H21 U8G sing 399 n n C10 H22 U8G sing 400 n n C10 H23 U8G sing 401 n n C10 H24 U8G sing 402 n n # _atom_sites.entry_id 6WRM _atom_sites.fract_transf_matrix[1][1] 0.012353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 4 RH A 1 204 1 RH RH . F 5 U8G A 1 205 11 U8G MC3 . G 6 HOH A 1 301 76 HOH HOH . G 6 HOH A 2 302 91 HOH HOH . G 6 HOH A 3 303 5 HOH HOH . G 6 HOH A 4 304 14 HOH HOH . G 6 HOH A 5 305 59 HOH HOH . G 6 HOH A 6 306 77 HOH HOH . G 6 HOH A 7 307 34 HOH HOH . G 6 HOH A 8 308 26 HOH HOH . G 6 HOH A 9 309 31 HOH HOH . G 6 HOH A 10 310 45 HOH HOH . G 6 HOH A 11 311 21 HOH HOH . G 6 HOH A 12 312 14 HOH HOH . G 6 HOH A 13 313 94 HOH HOH . G 6 HOH A 14 314 75 HOH HOH . G 6 HOH A 15 315 70 HOH HOH . G 6 HOH A 16 316 97 HOH HOH . G 6 HOH A 17 317 72 HOH HOH . G 6 HOH A 18 318 58 HOH HOH . G 6 HOH A 19 319 61 HOH HOH . G 6 HOH A 20 320 60 HOH HOH . G 6 HOH A 21 321 19 HOH HOH . G 6 HOH A 22 322 48 HOH HOH . G 6 HOH A 23 323 15 HOH HOH . G 6 HOH A 24 324 73 HOH HOH . G 6 HOH A 25 325 27 HOH HOH . G 6 HOH A 26 326 88 HOH HOH . G 6 HOH A 27 327 12 HOH HOH . G 6 HOH A 28 328 79 HOH HOH . G 6 HOH A 29 329 29 HOH HOH . G 6 HOH A 30 330 18 HOH HOH . G 6 HOH A 31 331 96 HOH HOH . G 6 HOH A 32 332 43 HOH HOH . G 6 HOH A 33 333 44 HOH HOH . G 6 HOH A 34 334 6 HOH HOH . G 6 HOH A 35 335 93 HOH HOH . G 6 HOH A 36 336 69 HOH HOH . G 6 HOH A 37 337 28 HOH HOH . G 6 HOH A 38 338 40 HOH HOH . G 6 HOH A 39 339 22 HOH HOH . G 6 HOH A 40 340 47 HOH HOH . G 6 HOH A 41 341 3 HOH HOH . G 6 HOH A 42 342 33 HOH HOH . G 6 HOH A 43 343 56 HOH HOH . G 6 HOH A 44 344 41 HOH HOH . G 6 HOH A 45 345 64 HOH HOH . G 6 HOH A 46 346 71 HOH HOH . G 6 HOH A 47 347 13 HOH HOH . G 6 HOH A 48 348 87 HOH HOH . G 6 HOH A 49 349 37 HOH HOH . G 6 HOH A 50 350 7 HOH HOH . G 6 HOH A 51 351 30 HOH HOH . G 6 HOH A 52 352 57 HOH HOH . G 6 HOH A 53 353 3 HOH HOH . G 6 HOH A 54 354 90 HOH HOH . G 6 HOH A 55 355 1 HOH HOH . G 6 HOH A 56 356 16 HOH HOH . G 6 HOH A 57 357 15 HOH HOH . G 6 HOH A 58 358 9 HOH HOH . G 6 HOH A 59 359 54 HOH HOH . G 6 HOH A 60 360 20 HOH HOH . G 6 HOH A 61 361 8 HOH HOH . G 6 HOH A 62 362 78 HOH HOH . G 6 HOH A 63 363 24 HOH HOH . G 6 HOH A 64 364 38 HOH HOH . G 6 HOH A 65 365 23 HOH HOH . G 6 HOH A 66 366 66 HOH HOH . G 6 HOH A 67 367 17 HOH HOH . G 6 HOH A 68 368 42 HOH HOH . G 6 HOH A 69 369 4 HOH HOH . G 6 HOH A 70 370 4 HOH HOH . G 6 HOH A 71 371 83 HOH HOH . G 6 HOH A 72 372 63 HOH HOH . G 6 HOH A 73 373 35 HOH HOH . G 6 HOH A 74 374 82 HOH HOH . G 6 HOH A 75 375 51 HOH HOH . G 6 HOH A 76 376 92 HOH HOH . G 6 HOH A 77 377 39 HOH HOH . G 6 HOH A 78 378 11 HOH HOH . G 6 HOH A 79 379 81 HOH HOH . G 6 HOH A 80 380 46 HOH HOH . G 6 HOH A 81 381 36 HOH HOH . G 6 HOH A 82 382 13 HOH HOH . G 6 HOH A 83 383 2 HOH HOH . G 6 HOH A 84 384 74 HOH HOH . G 6 HOH A 85 385 55 HOH HOH . G 6 HOH A 86 386 84 HOH HOH . G 6 HOH A 87 387 67 HOH HOH . G 6 HOH A 88 388 5 HOH HOH . G 6 HOH A 89 389 12 HOH HOH . G 6 HOH A 90 390 86 HOH HOH . G 6 HOH A 91 391 80 HOH HOH . G 6 HOH A 92 392 65 HOH HOH . G 6 HOH A 93 393 25 HOH HOH . G 6 HOH A 94 394 62 HOH HOH . G 6 HOH A 95 395 50 HOH HOH . G 6 HOH A 96 396 53 HOH HOH . G 6 HOH A 97 397 6 HOH HOH . G 6 HOH A 98 398 89 HOH HOH . G 6 HOH A 99 399 68 HOH HOH . G 6 HOH A 100 400 52 HOH HOH . G 6 HOH A 101 401 85 HOH HOH . G 6 HOH A 102 402 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 U8G . A . F 5 14.952 43.353 -9.276 0.35 19.27 ? C31 U8G 205 A 1 HETATM 2 C C31 U8G . B . F 5 14.68 43.166 -9.235 0.25 21.82 ? C31 U8G 205 A 1 HETATM 3 C C32 U8G . A . F 5 13.968 45.635 -9.701 0.35 23.57 ? C32 U8G 205 A 1 HETATM 4 C C32 U8G . B . F 5 12.298 43.981 -9.369 0.25 26.85 ? C32 U8G 205 A 1 HETATM 5 C C36 U8G . A . F 5 16.13 41.244 -9.737 0.35 23.12 ? C36 U8G 205 A 1 HETATM 6 C C36 U8G . B . F 5 16.789 42.095 -9.935 0.25 25.01 ? C36 U8G 205 A 1 HETATM 7 C C40 U8G . A . F 5 15.604 42.965 -11.474 0.35 22.91 ? C40 U8G 205 A 1 HETATM 8 C C40 U8G . B . F 5 14.755 42.265 -11.365 0.25 26.59 ? C40 U8G 205 A 1 HETATM 9 C C42 U8G . A . F 5 14.99 44.19 -11.441 0.35 22.42 ? C42 U8G 205 A 1 HETATM 10 C C42 U8G . B . F 5 13.507 42.782 -11.217 0.25 26.06 ? C42 U8G 205 A 1 HETATM 11 C C43 U8G . A . F 5 14.618 45.249 -12.413 0.35 22.24 ? C43 U8G 205 A 1 HETATM 12 C C43 U8G . B . F 5 12.308 42.872 -12.12 0.25 25.81 ? C43 U8G 205 A 1 HETATM 13 RH RH01 U8G . A . F 5 14.713 43.229 -7.188 0.35 24.05 ? RH01 U8G 205 A 1 HETATM 14 RH RH01 U8G . B . F 5 15.219 43.742 -7.286 0.25 23.77 ? RH01 U8G 205 A 1 HETATM 15 N N04 U8G . A . F 5 14.63 44.404 -10.092 0.35 23.18 ? N04 U8G 205 A 1 HETATM 16 N N04 U8G . B . F 5 13.488 43.324 -9.912 0.25 26.62 ? N04 U8G 205 A 1 HETATM 17 N N07 U8G . A . F 5 15.594 42.509 -10.134 0.35 23.18 ? N07 U8G 205 A 1 HETATM 18 N N07 U8G . B . F 5 15.436 42.505 -10.156 0.25 25.59 ? N07 U8G 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #