data_6WRQ # _model_server_result.job_id utTmgCSaaiVaR9Q8P0AMzA _model_server_result.datetime_utc '2024-11-24 01:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wrq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6WRQ # _exptl.entry_id 6WRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WRQ _cell.length_a 102 _cell.length_b 102 _cell.length_c 71.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 102 102 -35.83 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 27 A ASP 27 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc2 A O PRO 144 A PRO 144 1_555 D NA NA . A NA 403 5_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc3 D NA NA . A NA 403 1_555 G O HOH . A HOH 693 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WRQ _atom_sites.fract_transf_matrix[1][1] 0.009804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 402 GOL GOL . C 2 GOL A 1 402 403 GOL GOL . D 3 NA A 1 403 404 NA NA . E 4 NIY A 1 404 1 NIY NIY . F 4 NIY A 1 405 2 NIY NIY . G 5 HOH A 1 501 84 HOH HOH . G 5 HOH A 2 502 122 HOH HOH . G 5 HOH A 3 503 37 HOH HOH . G 5 HOH A 4 504 112 HOH HOH . G 5 HOH A 5 505 141 HOH HOH . G 5 HOH A 6 506 223 HOH HOH . G 5 HOH A 7 507 121 HOH HOH . G 5 HOH A 8 508 90 HOH HOH . G 5 HOH A 9 509 184 HOH HOH . G 5 HOH A 10 510 45 HOH HOH . G 5 HOH A 11 511 115 HOH HOH . G 5 HOH A 12 512 221 HOH HOH . G 5 HOH A 13 513 128 HOH HOH . G 5 HOH A 14 514 86 HOH HOH . G 5 HOH A 15 515 222 HOH HOH . G 5 HOH A 16 516 127 HOH HOH . G 5 HOH A 17 517 82 HOH HOH . G 5 HOH A 18 518 98 HOH HOH . G 5 HOH A 19 519 176 HOH HOH . G 5 HOH A 20 520 195 HOH HOH . G 5 HOH A 21 521 35 HOH HOH . G 5 HOH A 22 522 144 HOH HOH . G 5 HOH A 23 523 63 HOH HOH . G 5 HOH A 24 524 70 HOH HOH . G 5 HOH A 25 525 57 HOH HOH . G 5 HOH A 26 526 157 HOH HOH . G 5 HOH A 27 527 51 HOH HOH . G 5 HOH A 28 528 41 HOH HOH . G 5 HOH A 29 529 49 HOH HOH . G 5 HOH A 30 530 159 HOH HOH . G 5 HOH A 31 531 22 HOH HOH . G 5 HOH A 32 532 72 HOH HOH . G 5 HOH A 33 533 23 HOH HOH . G 5 HOH A 34 534 7 HOH HOH . G 5 HOH A 35 535 80 HOH HOH . G 5 HOH A 36 536 73 HOH HOH . G 5 HOH A 37 537 2 HOH HOH . G 5 HOH A 38 538 58 HOH HOH . G 5 HOH A 39 539 59 HOH HOH . G 5 HOH A 40 540 6 HOH HOH . G 5 HOH A 41 541 75 HOH HOH . G 5 HOH A 42 542 52 HOH HOH . G 5 HOH A 43 543 54 HOH HOH . G 5 HOH A 44 544 28 HOH HOH . G 5 HOH A 45 545 3 HOH HOH . G 5 HOH A 46 546 71 HOH HOH . G 5 HOH A 47 547 212 HOH HOH . G 5 HOH A 48 548 13 HOH HOH . G 5 HOH A 49 549 78 HOH HOH . G 5 HOH A 50 550 224 HOH HOH . G 5 HOH A 51 551 116 HOH HOH . G 5 HOH A 52 552 92 HOH HOH . G 5 HOH A 53 553 64 HOH HOH . G 5 HOH A 54 554 94 HOH HOH . G 5 HOH A 55 555 124 HOH HOH . G 5 HOH A 56 556 149 HOH HOH . G 5 HOH A 57 557 83 HOH HOH . G 5 HOH A 58 558 187 HOH HOH . G 5 HOH A 59 559 85 HOH HOH . G 5 HOH A 60 560 11 HOH HOH . G 5 HOH A 61 561 14 HOH HOH . G 5 HOH A 62 562 24 HOH HOH . G 5 HOH A 63 563 81 HOH HOH . G 5 HOH A 64 564 56 HOH HOH . G 5 HOH A 65 565 126 HOH HOH . G 5 HOH A 66 566 101 HOH HOH . G 5 HOH A 67 567 142 HOH HOH . G 5 HOH A 68 568 91 HOH HOH . G 5 HOH A 69 569 55 HOH HOH . G 5 HOH A 70 570 16 HOH HOH . G 5 HOH A 71 571 148 HOH HOH . G 5 HOH A 72 572 69 HOH HOH . G 5 HOH A 73 573 4 HOH HOH . G 5 HOH A 74 574 33 HOH HOH . G 5 HOH A 75 575 27 HOH HOH . G 5 HOH A 76 576 19 HOH HOH . G 5 HOH A 77 577 169 HOH HOH . G 5 HOH A 78 578 50 HOH HOH . G 5 HOH A 79 579 68 HOH HOH . G 5 HOH A 80 580 65 HOH HOH . G 5 HOH A 81 581 67 HOH HOH . G 5 HOH A 82 582 77 HOH HOH . G 5 HOH A 83 583 42 HOH HOH . G 5 HOH A 84 584 205 HOH HOH . G 5 HOH A 85 585 1 HOH HOH . G 5 HOH A 86 586 163 HOH HOH . G 5 HOH A 87 587 211 HOH HOH . G 5 HOH A 88 588 17 HOH HOH . G 5 HOH A 89 589 152 HOH HOH . G 5 HOH A 90 590 60 HOH HOH . G 5 HOH A 91 591 21 HOH HOH . G 5 HOH A 92 592 5 HOH HOH . G 5 HOH A 93 593 39 HOH HOH . G 5 HOH A 94 594 8 HOH HOH . G 5 HOH A 95 595 118 HOH HOH . G 5 HOH A 96 596 136 HOH HOH . G 5 HOH A 97 597 38 HOH HOH . G 5 HOH A 98 598 151 HOH HOH . G 5 HOH A 99 599 107 HOH HOH . G 5 HOH A 100 600 46 HOH HOH . G 5 HOH A 101 601 210 HOH HOH . G 5 HOH A 102 602 146 HOH HOH . G 5 HOH A 103 603 120 HOH HOH . G 5 HOH A 104 604 79 HOH HOH . G 5 HOH A 105 605 9 HOH HOH . G 5 HOH A 106 606 88 HOH HOH . G 5 HOH A 107 607 15 HOH HOH . G 5 HOH A 108 608 36 HOH HOH . G 5 HOH A 109 609 30 HOH HOH . G 5 HOH A 110 610 204 HOH HOH . G 5 HOH A 111 611 26 HOH HOH . G 5 HOH A 112 612 143 HOH HOH . G 5 HOH A 113 613 155 HOH HOH . G 5 HOH A 114 614 188 HOH HOH . G 5 HOH A 115 615 178 HOH HOH . G 5 HOH A 116 616 10 HOH HOH . G 5 HOH A 117 617 123 HOH HOH . G 5 HOH A 118 618 53 HOH HOH . G 5 HOH A 119 619 202 HOH HOH . G 5 HOH A 120 620 93 HOH HOH . G 5 HOH A 121 621 25 HOH HOH . G 5 HOH A 122 622 189 HOH HOH . G 5 HOH A 123 623 97 HOH HOH . G 5 HOH A 124 624 74 HOH HOH . G 5 HOH A 125 625 140 HOH HOH . G 5 HOH A 126 626 48 HOH HOH . G 5 HOH A 127 627 111 HOH HOH . G 5 HOH A 128 628 29 HOH HOH . G 5 HOH A 129 629 62 HOH HOH . G 5 HOH A 130 630 43 HOH HOH . G 5 HOH A 131 631 113 HOH HOH . G 5 HOH A 132 632 100 HOH HOH . G 5 HOH A 133 633 106 HOH HOH . G 5 HOH A 134 634 20 HOH HOH . G 5 HOH A 135 635 12 HOH HOH . G 5 HOH A 136 636 135 HOH HOH . G 5 HOH A 137 637 66 HOH HOH . G 5 HOH A 138 638 164 HOH HOH . G 5 HOH A 139 639 219 HOH HOH . G 5 HOH A 140 640 125 HOH HOH . G 5 HOH A 141 641 199 HOH HOH . G 5 HOH A 142 642 76 HOH HOH . G 5 HOH A 143 643 114 HOH HOH . G 5 HOH A 144 644 31 HOH HOH . G 5 HOH A 145 645 145 HOH HOH . G 5 HOH A 146 646 108 HOH HOH . G 5 HOH A 147 647 147 HOH HOH . G 5 HOH A 148 648 32 HOH HOH . G 5 HOH A 149 649 156 HOH HOH . G 5 HOH A 150 650 99 HOH HOH . G 5 HOH A 151 651 34 HOH HOH . G 5 HOH A 152 652 203 HOH HOH . G 5 HOH A 153 653 129 HOH HOH . G 5 HOH A 154 654 170 HOH HOH . G 5 HOH A 155 655 104 HOH HOH . G 5 HOH A 156 656 139 HOH HOH . G 5 HOH A 157 657 175 HOH HOH . G 5 HOH A 158 658 179 HOH HOH . G 5 HOH A 159 659 214 HOH HOH . G 5 HOH A 160 660 185 HOH HOH . G 5 HOH A 161 661 190 HOH HOH . G 5 HOH A 162 662 196 HOH HOH . G 5 HOH A 163 663 165 HOH HOH . G 5 HOH A 164 664 220 HOH HOH . G 5 HOH A 165 665 198 HOH HOH . G 5 HOH A 166 666 197 HOH HOH . G 5 HOH A 167 667 162 HOH HOH . G 5 HOH A 168 668 119 HOH HOH . G 5 HOH A 169 669 160 HOH HOH . G 5 HOH A 170 670 174 HOH HOH . G 5 HOH A 171 671 181 HOH HOH . G 5 HOH A 172 672 225 HOH HOH . G 5 HOH A 173 673 161 HOH HOH . G 5 HOH A 174 674 171 HOH HOH . G 5 HOH A 175 675 182 HOH HOH . G 5 HOH A 176 676 89 HOH HOH . G 5 HOH A 177 677 132 HOH HOH . G 5 HOH A 178 678 209 HOH HOH . G 5 HOH A 179 679 44 HOH HOH . G 5 HOH A 180 680 208 HOH HOH . G 5 HOH A 181 681 207 HOH HOH . G 5 HOH A 182 682 180 HOH HOH . G 5 HOH A 183 683 194 HOH HOH . G 5 HOH A 184 684 40 HOH HOH . G 5 HOH A 185 685 173 HOH HOH . G 5 HOH A 186 686 172 HOH HOH . G 5 HOH A 187 687 150 HOH HOH . G 5 HOH A 188 688 183 HOH HOH . G 5 HOH A 189 689 130 HOH HOH . G 5 HOH A 190 690 95 HOH HOH . G 5 HOH A 191 691 200 HOH HOH . G 5 HOH A 192 692 226 HOH HOH . G 5 HOH A 193 693 117 HOH HOH . G 5 HOH A 194 694 193 HOH HOH . G 5 HOH A 195 695 131 HOH HOH . G 5 HOH A 196 696 177 HOH HOH . G 5 HOH A 197 697 192 HOH HOH . G 5 HOH A 198 698 186 HOH HOH . G 5 HOH A 199 699 215 HOH HOH . G 5 HOH A 200 700 166 HOH HOH . G 5 HOH A 201 701 168 HOH HOH . G 5 HOH A 202 702 201 HOH HOH . G 5 HOH A 203 703 216 HOH HOH . G 5 HOH A 204 704 218 HOH HOH . G 5 HOH A 205 705 206 HOH HOH . G 5 HOH A 206 706 138 HOH HOH . G 5 HOH A 207 707 217 HOH HOH . G 5 HOH A 208 708 213 HOH HOH . G 5 HOH A 209 709 96 HOH HOH . G 5 HOH A 210 710 137 HOH HOH . G 5 HOH A 211 711 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 79.069 _atom_site.Cartn_y 71.675 _atom_site.Cartn_z -3.384 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 1 #