data_6WRX # _model_server_result.job_id Tscaeaqwr2Es5x50b1A6zg _model_server_result.datetime_utc '2024-12-16 08:11:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":808}' # _entry.id 6WRX # _exptl.entry_id 6WRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WRX _cell.length_a 137.425 _cell.length_b 137.425 _cell.length_c 280.158 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 803 NAG 3 n E NAG 2 E 2 NAG A 804 NAG 3 n E BMA 3 E 3 BMA A 805 BMA 3 n F NAG 1 F 1 NAG A 806 NAG 3 n F NAG 2 F 2 NAG A 807 NAG 3 n F BMA 3 F 3 BMA A 808 BMA 4 n G NAG 1 G 1 NAG B 809 NAG 4 n G NAG 2 G 2 NAG B 810 NAG 5 n H NAG 1 H 1 NAG B 811 NAG 5 n H NAG 2 H 2 NAG B 812 NAG 5 n H BMA 3 H 3 BMA B 813 BMA 5 n H MAN 4 H 4 MAN B 814 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 233 A CYS 353 1_555 A SG CYS 243 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 233 B CYS 353 1_555 B SG CYS 243 B CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 197 A ASN 317 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 607 A ASN 727 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B ND2 ASN 131 B ASN 251 1_555 J C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 B ND2 ASN 197 B ASN 317 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 B ND2 ASN 607 B ASN 727 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale12 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale13 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? metalc ? metalc1 A O THR 190 A THR 310 1_555 I CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc2 A OG1 THR 190 A THR 310 1_555 I CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 A O PHE 193 A PHE 313 1_555 I CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 A OE1 GLU 345 A GLU 465 1_555 I CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc5 A OE2 GLU 345 A GLU 465 1_555 I CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 A OE1 GLU 348 A GLU 468 1_555 I CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc7 B O THR 190 B THR 310 1_555 L CA CA . B CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc8 B OG1 THR 190 B THR 310 1_555 L CA CA . B CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc9 B O PHE 193 B PHE 313 1_555 L CA CA . B CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc10 B OE1 GLU 345 B GLU 465 1_555 L CA CA . B CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc11 B OE2 GLU 345 B GLU 465 1_555 L CA CA . B CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc12 B OE1 GLU 348 B GLU 468 1_555 L CA CA . B CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 240 n n C1 O1 MAN sing 241 n n C1 O5 MAN sing 242 n n C1 H1 MAN sing 243 n n C2 C3 MAN sing 244 n n C2 O2 MAN sing 245 n n C2 H2 MAN sing 246 n n C3 C4 MAN sing 247 n n C3 O3 MAN sing 248 n n C3 H3 MAN sing 249 n n C4 C5 MAN sing 250 n n C4 O4 MAN sing 251 n n C4 H4 MAN sing 252 n n C5 C6 MAN sing 253 n n C5 O5 MAN sing 254 n n C5 H5 MAN sing 255 n n C6 O6 MAN sing 256 n n C6 H61 MAN sing 257 n n C6 H62 MAN sing 258 n n O1 HO1 MAN sing 259 n n O2 HO2 MAN sing 260 n n O3 HO3 MAN sing 261 n n O4 HO4 MAN sing 262 n n O6 HO6 MAN sing 263 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WRX _atom_sites.fract_transf_matrix[1][1] 0.007277 _atom_sites.fract_transf_matrix[1][2] 0.004201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 CA A 1 807 801 CA CA . J 7 NAG B 1 801 802 NAG NAG . K 8 MAN B 1 808 815 MAN MAN . L 6 CA B 1 809 801 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . K 8 21.56 56.917 -20.744 1 159.33 ? C1 MAN 808 B 1 HETATM 2 C C2 MAN . . . K 8 21.99 58.383 -20.925 1 155.99 ? C2 MAN 808 B 1 HETATM 3 C C3 MAN . . . K 8 23.299 58.438 -21.698 1 156.9 ? C3 MAN 808 B 1 HETATM 4 C C4 MAN . . . K 8 24.355 57.506 -21.055 1 165.72 ? C4 MAN 808 B 1 HETATM 5 C C5 MAN . . . K 8 23.808 56.067 -20.946 1 170.75 ? C5 MAN 808 B 1 HETATM 6 C C6 MAN . . . K 8 24.753 55.134 -20.218 1 160.89 ? C6 MAN 808 B 1 HETATM 7 O O2 MAN . . . K 8 22.26 59.007 -19.666 1 149.08 ? O2 MAN 808 B 1 HETATM 8 O O3 MAN . . . K 8 23.794 59.774 -21.809 1 143.94 ? O3 MAN 808 B 1 HETATM 9 O O4 MAN . . . K 8 25.547 57.51 -21.832 1 158.44 ? O4 MAN 808 B 1 HETATM 10 O O5 MAN . . . K 8 22.577 56.096 -20.208 1 168.28 ? O5 MAN 808 B 1 HETATM 11 O O6 MAN . . . K 8 26.009 55.225 -20.866 1 149.28 ? O6 MAN 808 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #