data_6WS1 # _model_server_result.job_id sePtXScI2ckpO9ou6GyPsQ _model_server_result.datetime_utc '2025-04-13 16:35:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ws1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6WS1 # _exptl.entry_id 6WS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WS1 _cell.length_a 93.886 _cell.length_b 93.886 _cell.length_c 188.272 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 48 1_555 B SG CYS 151 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 151 A CYS 139 1_555 B SG CYS 60 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 A OE1 GLU 231 A GLU 219 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 6WS1 _atom_sites.fract_transf_matrix[1][1] 0.010651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 EDO A 1 302 1 EDO EDO . E 3 EDO A 1 303 2 EDO EDO . F 4 CD A 1 304 1 CD CD . G 5 K A 1 305 1 K K . H 6 U87 B 1 301 1 U87 NU3 . I 3 EDO B 1 302 3 EDO EDO . J 7 HOH A 1 401 2 HOH HOH . J 7 HOH A 2 402 5 HOH HOH . J 7 HOH A 3 403 1 HOH HOH . J 7 HOH A 4 404 8 HOH HOH . J 7 HOH A 5 405 11 HOH HOH . J 7 HOH A 6 406 3 HOH HOH . K 7 HOH B 1 401 1 HOH HOH . K 7 HOH B 2 402 10 HOH HOH . K 7 HOH B 3 403 4 HOH HOH . K 7 HOH B 4 404 6 HOH HOH . K 7 HOH B 5 405 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 -6.147 -20.928 -29.307 1 87.18 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . C 2 -5.544 -19.599 -29.363 1 85.93 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . C 2 -4.746 -19.266 -28.104 1 87.57 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . C 2 -5.077 -17.92 -27.471 1 90.27 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . C 2 -3.794 -17.296 -26.354 1 95.8 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . C 2 -4.627 -19.506 -30.564 1 85.38 ? C SAH 301 A 1 HETATM 7 O O SAH . . . C 2 -4.076 -18.43 -30.83 1 80.59 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . C 2 -4.41 -20.511 -31.256 1 81.47 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . C 2 -4.747 -17.762 -24.869 1 94.66 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . C 2 -6.261 -17.513 -24.893 1 97.06 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . C 2 -6.848 -18.041 -23.717 1 94.17 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . C 2 -6.65 -16.033 -24.935 1 100.85 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . C 2 -7.499 -15.752 -26.031 1 88.74 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . C 2 -7.438 -15.772 -23.67 1 98.85 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . C 2 -8.582 -14.986 -23.934 1 102.6 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . C 2 -7.848 -17.157 -23.22 1 100.96 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . C 2 -7.973 -17.13 -21.749 1 102.57 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . C 2 -7.394 -16.195 -20.933 1 103.84 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . C 2 -7.726 -16.476 -19.655 1 107.23 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . C 2 -8.514 -17.579 -19.635 1 106.81 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . C 2 -9.118 -18.28 -18.586 1 104.91 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . C 2 -8.955 -17.881 -17.324 1 102.99 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . C 2 -9.884 -19.394 -18.877 1 107.67 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . C 2 -10.036 -19.796 -20.199 1 107.59 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . C 2 -9.437 -19.094 -21.23 1 99.52 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . C 2 -8.683 -18 -20.953 1 100.75 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #