data_6WS1
#
_model_server_result.job_id            rL_UAmqi7tqROO9HcqqftQ 
_model_server_result.datetime_utc      '2024-11-19 17:35:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ws1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    6WS1 
#
_exptl.entry_id    6WS1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              609.505 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-([(3S)-3-amino-3-carboxypropyl]{3-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl}amino)-5'-deoxyadenosine" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WS1 
_cell.length_a            93.886 
_cell.length_b            93.886 
_cell.length_c            188.272 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WS1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 60 A CYS 48 1_555 B SG CYS 151 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 151 A CYS 139 1_555 B SG CYS 60 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc1 A OE1 GLU 231 A GLU 219 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
#
_chem_comp.formula           'C26 H34 Cl2 N8 O5' 
_chem_comp.formula_weight    609.505 
_chem_comp.id                U87 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-([(3S)-3-amino-3-carboxypropyl]{3-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl}amino)-5'-deoxyadenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C6 U87 sing 415 n n 
C6 N1 U87 doub 416 n y 
C6 C5 U87 sing 417 n y 
N1 C2 U87 sing 418 n y 
N7 C5 U87 sing 419 n y 
N7 C8 U87 doub 420 n y 
C5 C4 U87 doub 421 n y 
C2 N3 U87 doub 422 n y 
C8 N9 U87 sing 423 n y 
C4 N3 U87 sing 424 n y 
C4 N9 U87 sing 425 n y 
N9 C1' U87 sing 426 n n 
C1' O4 U87 sing 427 n n 
C1' C2' U87 sing 428 n n 
O4 C4' U87 sing 429 n n 
C2' O2' U87 sing 430 n n 
C2' C3' U87 sing 431 n n 
C4' C3' U87 sing 432 n n 
C4' C5' U87 sing 433 n n 
C3' O3' U87 sing 434 n n 
C5' ND U87 sing 435 n n 
C15 N10 U87 sing 436 n n 
C15 C14 U87 sing 437 n n 
N10 C16 U87 sing 438 n n 
C12 C11 U87 sing 439 n n 
C12 C13 U87 sing 440 n n 
C16 C17 U87 sing 441 n n 
ND C11 U87 sing 442 n n 
ND CG U87 sing 443 n n 
C13 C14 U87 sing 444 n n 
C14 C18 U87 sing 445 n n 
CG CB U87 sing 446 n n 
C17 C18 U87 doub 447 n y 
C17 C22 U87 sing 448 n y 
C18 C19 U87 sing 449 n y 
CL2 C22 U87 sing 450 n n 
CB CA U87 sing 451 n n 
C22 C21 U87 doub 452 n y 
C19 C20 U87 doub 453 n y 
N CA U87 sing 454 n n 
CA C U87 sing 455 n n 
C21 C20 U87 sing 456 n y 
C21 CL1 U87 sing 457 n n 
C O1 U87 doub 458 n n 
C O U87 sing 459 n n 
N H1 U87 sing 460 n n 
N H2 U87 sing 461 n n 
O H4 U87 sing 462 n n 
C2 H5 U87 sing 463 n n 
C8 H6 U87 sing 464 n n 
C11 H7 U87 sing 465 n n 
C11 H8 U87 sing 466 n n 
C12 H9 U87 sing 467 n n 
C12 H10 U87 sing 468 n n 
C13 H11 U87 sing 469 n n 
C13 H12 U87 sing 470 n n 
CA H13 U87 sing 471 n n 
CB H14 U87 sing 472 n n 
CB H15 U87 sing 473 n n 
CG H16 U87 sing 474 n n 
CG H17 U87 sing 475 n n 
C1' H19 U87 sing 476 n n 
C14 H20 U87 sing 477 n n 
C15 H21 U87 sing 478 n n 
C15 H22 U87 sing 479 n n 
C16 H23 U87 sing 480 n n 
C16 H24 U87 sing 481 n n 
C19 H27 U87 sing 482 n n 
C2' H29 U87 sing 483 n n 
C20 H30 U87 sing 484 n n 
C3' H32 U87 sing 485 n n 
C4' H33 U87 sing 486 n n 
C5' H34 U87 sing 487 n n 
C5' H35 U87 sing 488 n n 
N10 H36 U87 sing 489 n n 
N6 H38 U87 sing 490 n n 
N6 H39 U87 sing 491 n n 
O2' H40 U87 sing 492 n n 
O3' H41 U87 sing 493 n n 
#
_atom_sites.entry_id                     6WS1 
_atom_sites.fract_transf_matrix[1][1]    0.010651 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005311 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 301 301 SAH SAH . 
D 3 EDO A 1 302 1 EDO EDO . 
E 3 EDO A 1 303 2 EDO EDO . 
F 4 CD A 1 304 1 CD CD . 
G 5 K A 1 305 1 K K . 
H 6 U87 B 1 301 1 U87 NU3 . 
I 3 EDO B 1 302 3 EDO EDO . 
J 7 HOH A 1 401 2 HOH HOH . 
J 7 HOH A 2 402 5 HOH HOH . 
J 7 HOH A 3 403 1 HOH HOH . 
J 7 HOH A 4 404 8 HOH HOH . 
J 7 HOH A 5 405 11 HOH HOH . 
J 7 HOH A 6 406 3 HOH HOH . 
K 7 HOH B 1 401 1 HOH HOH . 
K 7 HOH B 2 402 10 HOH HOH . 
K 7 HOH B 3 403 4 HOH HOH . 
K 7 HOH B 4 404 6 HOH HOH . 
K 7 HOH B 5 405 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C U87 . . . H 6 -5.941 -18.485 -73.37 1 76.57 ? C U87 301 B 1 
HETATM 2 N N U87 . . . H 6 -4.09 -18.349 -74.915 1 70.78 ? N U87 301 B 1 
HETATM 3 O O U87 . . . H 6 -6.992 -18.037 -72.838 1 73.31 ? O U87 301 B 1 
HETATM 4 N N1 U87 . . . H 6 -1.001 -15.593 -85.024 1 87.24 ? N1 U87 301 B 1 
HETATM 5 O O1 U87 . . . H 6 -5.505 -19.653 -73.201 1 72.21 ? O1 U87 301 B 1 
HETATM 6 C C2 U87 . . . H 6 -0.699 -15.789 -83.729 1 81.05 ? C2 U87 301 B 1 
HETATM 7 C C4 U87 . . . H 6 -2.71 -14.887 -83.033 1 78.28 ? C4 U87 301 B 1 
HETATM 8 C C5 U87 . . . H 6 -3.06 -14.666 -84.357 1 83.36 ? C5 U87 301 B 1 
HETATM 9 C C6 U87 . . . H 6 -2.185 -15.033 -85.373 1 88.1 ? C6 U87 301 B 1 
HETATM 10 C C8 U87 . . . H 6 -4.662 -13.983 -83.087 1 80.79 ? C8 U87 301 B 1 
HETATM 11 C C11 U87 . . . H 6 -8.155 -16.105 -77.293 1 80.83 ? C11 U87 301 B 1 
HETATM 12 C C12 U87 . . . H 6 -8.914 -17.144 -78.105 1 81.57 ? C12 U87 301 B 1 
HETATM 13 C C13 U87 . . . H 6 -9.646 -18.146 -77.233 1 79.89 ? C13 U87 301 B 1 
HETATM 14 C CA U87 . . . H 6 -5.144 -17.562 -74.245 1 71.86 ? CA U87 301 B 1 
HETATM 15 C CB U87 . . . H 6 -6.069 -16.844 -75.233 1 75.65 ? CB U87 301 B 1 
HETATM 16 C CG U87 . . . H 6 -6.15 -17.373 -76.672 1 76.82 ? CG U87 301 B 1 
HETATM 17 N ND U87 . . . H 6 -6.693 -16.244 -77.481 1 79.96 ? ND U87 301 B 1 
HETATM 18 C C1' U87 . . . H 6 -3.779 -14.49 -80.792 1 71.38 ? C1' U87 301 B 1 
HETATM 19 C C14 U87 . . . H 6 -11.153 -17.924 -77.195 1 85.82 ? C14 U87 301 B 1 
HETATM 20 C C15 U87 . . . H 6 -11.826 -18.319 -78.507 1 89.08 ? C15 U87 301 B 1 
HETATM 21 C C16 U87 . . . H 6 -13.189 -20.107 -77.63 1 86.11 ? C16 U87 301 B 1 
HETATM 22 C C17 U87 . . . H 6 -12.21 -20.125 -76.456 1 93.87 ? C17 U87 301 B 1 
HETATM 23 C C18 U87 . . . H 6 -11.756 -18.726 -76.054 1 87.94 ? C18 U87 301 B 1 
HETATM 24 C C19 U87 . . . H 6 -10.751 -18.9 -74.943 1 87.81 ? C19 U87 301 B 1 
HETATM 25 C C2' U87 . . . H 6 -4.778 -13.443 -80.35 1 73.05 ? C2' U87 301 B 1 
HETATM 26 C C20 U87 . . . H 6 -11.131 -19.611 -73.886 1 92.19 ? C20 U87 301 B 1 
HETATM 27 C C21 U87 . . . H 6 -12.158 -20.661 -74.064 1 97.11 ? C21 U87 301 B 1 
HETATM 28 C C22 U87 . . . H 6 -12.858 -20.69 -75.223 1 97.9 ? C22 U87 301 B 1 
HETATM 29 C C3' U87 . . . H 6 -5.302 -13.97 -79.03 1 77.64 ? C3' U87 301 B 1 
HETATM 30 C C4' U87 . . . H 6 -5.046 -15.468 -79.108 1 74.81 ? C4' U87 301 B 1 
HETATM 31 C C5' U87 . . . H 6 -6.315 -16.303 -78.91 1 70.17 ? C5' U87 301 B 1 
HETATM 32 N N10 U87 . . . H 6 -13.207 -18.756 -78.213 1 90.65 ? N10 U87 301 B 1 
HETATM 33 N N3 U87 . . . H 6 -1.53 -15.45 -82.738 1 76.2 ? N3 U87 301 B 1 
HETATM 34 N N6 U87 . . . H 6 -2.502 -14.835 -86.68 1 77.67 ? N6 U87 301 B 1 
HETATM 35 N N7 U87 . . . H 6 -4.273 -14.107 -84.369 1 78.47 ? N7 U87 301 B 1 
HETATM 36 N N9 U87 . . . H 6 -3.706 -14.459 -82.272 1 82.8 ? N9 U87 301 B 1 
HETATM 37 O O2' U87 . . . H 6 -4.172 -12.155 -80.224 1 81.16 ? O2' U87 301 B 1 
HETATM 38 O O3' U87 . . . H 6 -4.568 -13.384 -77.939 1 75.49 ? O3' U87 301 B 1 
HETATM 39 O O4 U87 . . . H 6 -4.393 -15.701 -80.369 1 69.33 ? O4 U87 301 B 1 
HETATM 40 CL CL1 U87 . . . H 6 -12.395 -21.763 -72.694 1 108.48 ? CL1 U87 301 B 1 
HETATM 41 CL CL2 U87 . . . H 6 -14.532 -21.26 -75.369 1 123.16 ? CL2 U87 301 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           41 
#