data_6WS3 # _model_server_result.job_id Liw27DhrypHtQEerHTV4eg _model_server_result.datetime_utc '2024-11-29 16:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ws3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6WS3 # _exptl.entry_id 6WS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WS3 _cell.length_a 89.646 _cell.length_b 89.646 _cell.length_c 133.773 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 278 n n C1 C2 GOL sing 279 n n C1 H11 GOL sing 280 n n C1 H12 GOL sing 281 n n O1 HO1 GOL sing 282 n n C2 O2 GOL sing 283 n n C2 C3 GOL sing 284 n n C2 H2 GOL sing 285 n n O2 HO2 GOL sing 286 n n C3 O3 GOL sing 287 n n C3 H31 GOL sing 288 n n C3 H32 GOL sing 289 n n O3 HO3 GOL sing 290 n n # _atom_sites.entry_id 6WS3 _atom_sites.fract_transf_matrix[1][1] 0.011155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 201 220 GOL GOL . E 3 GOL A 1 202 320 GOL GOL . F 4 MN A 1 203 1 MN MN . G 5 SO4 A 1 204 1 SO4 SO4 . H 5 SO4 A 1 205 2 SO4 SO4 . I 6 HOH A 1 301 90 HOH HOH . I 6 HOH A 2 302 79 HOH HOH . I 6 HOH A 3 303 78 HOH HOH . I 6 HOH A 4 304 53 HOH HOH . I 6 HOH A 5 305 5 HOH HOH . I 6 HOH A 6 306 84 HOH HOH . I 6 HOH A 7 307 85 HOH HOH . I 6 HOH A 8 308 52 HOH HOH . I 6 HOH A 9 309 7 HOH HOH . I 6 HOH A 10 310 59 HOH HOH . I 6 HOH A 11 311 57 HOH HOH . I 6 HOH A 12 312 94 HOH HOH . I 6 HOH A 13 313 3 HOH HOH . I 6 HOH A 14 314 76 HOH HOH . I 6 HOH A 15 315 86 HOH HOH . I 6 HOH A 16 316 70 HOH HOH . I 6 HOH A 17 317 74 HOH HOH . I 6 HOH A 18 318 23 HOH HOH . I 6 HOH A 19 319 66 HOH HOH . I 6 HOH A 20 320 81 HOH HOH . I 6 HOH A 21 321 68 HOH HOH . I 6 HOH A 22 322 39 HOH HOH . I 6 HOH A 23 323 75 HOH HOH . I 6 HOH A 24 324 38 HOH HOH . I 6 HOH A 25 325 15 HOH HOH . I 6 HOH A 26 326 93 HOH HOH . I 6 HOH A 27 327 41 HOH HOH . I 6 HOH A 28 328 107 HOH HOH . I 6 HOH A 29 329 109 HOH HOH . I 6 HOH A 30 330 69 HOH HOH . I 6 HOH A 31 331 37 HOH HOH . I 6 HOH A 32 332 44 HOH HOH . I 6 HOH A 33 333 8 HOH HOH . I 6 HOH A 34 334 35 HOH HOH . I 6 HOH A 35 335 91 HOH HOH . I 6 HOH A 36 336 2 HOH HOH . I 6 HOH A 37 337 50 HOH HOH . I 6 HOH A 38 338 36 HOH HOH . I 6 HOH A 39 339 67 HOH HOH . I 6 HOH A 40 340 89 HOH HOH . I 6 HOH A 41 341 82 HOH HOH . I 6 HOH A 42 342 92 HOH HOH . I 6 HOH A 43 343 62 HOH HOH . I 6 HOH A 44 344 64 HOH HOH . I 6 HOH A 45 345 6 HOH HOH . I 6 HOH A 46 346 96 HOH HOH . I 6 HOH A 47 347 83 HOH HOH . I 6 HOH A 48 348 54 HOH HOH . I 6 HOH A 49 349 55 HOH HOH . I 6 HOH A 50 350 108 HOH HOH . I 6 HOH A 51 351 51 HOH HOH . I 6 HOH A 52 352 40 HOH HOH . I 6 HOH A 53 353 45 HOH HOH . I 6 HOH A 54 354 102 HOH HOH . I 6 HOH A 55 355 99 HOH HOH . I 6 HOH A 56 356 63 HOH HOH . I 6 HOH A 57 357 61 HOH HOH . I 6 HOH A 58 358 73 HOH HOH . I 6 HOH A 59 359 105 HOH HOH . I 6 HOH A 60 360 42 HOH HOH . I 6 HOH A 61 361 65 HOH HOH . I 6 HOH A 62 362 88 HOH HOH . I 6 HOH A 63 363 95 HOH HOH . I 6 HOH A 64 364 77 HOH HOH . I 6 HOH A 65 365 106 HOH HOH . I 6 HOH A 66 366 56 HOH HOH . I 6 HOH A 67 367 87 HOH HOH . I 6 HOH A 68 368 103 HOH HOH . I 6 HOH A 69 369 104 HOH HOH . J 6 HOH F 1 101 71 HOH HOH . J 6 HOH F 2 102 100 HOH HOH . J 6 HOH F 3 103 110 HOH HOH . J 6 HOH F 4 104 101 HOH HOH . K 6 HOH E 1 101 72 HOH HOH . K 6 HOH E 2 102 98 HOH HOH . K 6 HOH E 3 103 97 HOH HOH . K 6 HOH E 4 104 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 294.081 -30.167 435.078 1 99.56 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . D 3 295.192 -29.975 434.245 1 96.53 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . D 3 292.847 -29.518 434.375 1 97.44 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . D 3 291.69 -29.597 435.164 1 89.41 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . D 3 293.286 -28.042 434.034 1 99.81 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . D 3 292.468 -27.569 432.985 1 99.33 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #