data_6WS6 # _model_server_result.job_id V5BiV0kk9p58LsY5G5gLuw _model_server_result.datetime_utc '2024-11-25 09:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ws6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 6WS6 # _exptl.entry_id 6WS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 597.822 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WS6 _cell.length_a 132.59 _cell.length_b 132.59 _cell.length_c 301.24 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G 1 1 C,D 2 1 E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 154 A CYS 154 1_555 A SG CYS 210 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 154 C CYS 154 1_555 C SG CYS 210 C CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 134 D CYS 134 1_555 D SG CYS 194 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 154 E CYS 154 1_555 E SG CYS 210 E CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 23 F CYS 23 1_555 F SG CYS 89 F CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 F SG CYS 134 F CYS 134 1_555 F SG CYS 194 F CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C30 H63 N O10' _chem_comp.formula_weight 597.822 _chem_comp.id JEF _chem_comp.mon_nstd_flag . _chem_comp.name "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JEFFAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 O12 JEF sing 171 n n C38 H381 JEF sing 172 n n C38 H382 JEF sing 173 n n C38 H383 JEF sing 174 n n O12 C37 JEF sing 175 n n C37 C36 JEF sing 176 n n C37 H371 JEF sing 177 n n C37 H372 JEF sing 178 n n C36 O11 JEF sing 179 n n C36 H361 JEF sing 180 n n C36 H362 JEF sing 181 n n C33 C34 JEF sing 182 n n C33 C32 JEF sing 183 n n C33 H33 JEF sing 184 n n C34 H341 JEF sing 185 n n C34 H342 JEF sing 186 n n C34 H343 JEF sing 187 n n C32 O10 JEF sing 188 n n C32 H321 JEF sing 189 n n C32 H322 JEF sing 190 n n O10 C19 JEF sing 191 n n C19 C40 JEF sing 192 n n C19 C20 JEF sing 193 n n C19 H19 JEF sing 194 n n C40 H401 JEF sing 195 n n C40 H402 JEF sing 196 n n C40 H403 JEF sing 197 n n C20 O JEF sing 198 n n C20 H201 JEF sing 199 n n C20 H202 JEF sing 200 n n O C JEF sing 201 n n C C18 JEF sing 202 n n C C17 JEF sing 203 n n C H JEF sing 204 n n C18 H181 JEF sing 205 n n C18 H182 JEF sing 206 n n C18 H183 JEF sing 207 n n C17 OH JEF sing 208 n n C17 H171 JEF sing 209 n n C17 H172 JEF sing 210 n n OH C2 JEF sing 211 n n C2 C1 JEF sing 212 n n C2 C3 JEF sing 213 n n C2 H2 JEF sing 214 n n C1 H11A JEF sing 215 n n C1 H12 JEF sing 216 n n C1 H13A JEF sing 217 n n C3 O2 JEF sing 218 n n C3 H31 JEF sing 219 n n C3 H32 JEF sing 220 n n O2 C5 JEF sing 221 n n C5 C6 JEF sing 222 n n C5 C4 JEF sing 223 n n C5 H5 JEF sing 224 n n C6 H61 JEF sing 225 n n C6 H62 JEF sing 226 n n C6 H63 JEF sing 227 n n C4 O3 JEF sing 228 n n C4 H41 JEF sing 229 n n C4 H42 JEF sing 230 n n O3 C7 JEF sing 231 n n C7 C9 JEF sing 232 n n C7 C8 JEF sing 233 n n C7 H7 JEF sing 234 n n C9 H91 JEF sing 235 n n C9 H92 JEF sing 236 n n C9 H93 JEF sing 237 n n C8 O4 JEF sing 238 n n C8 H81 JEF sing 239 n n C8 H82 JEF sing 240 n n O4 C11 JEF sing 241 n n C11 C12 JEF sing 242 n n C11 C10 JEF sing 243 n n C11 H11 JEF sing 244 n n C12 H121 JEF sing 245 n n C12 H122 JEF sing 246 n n C12 H123 JEF sing 247 n n C10 O5 JEF sing 248 n n C10 H101 JEF sing 249 n n C10 H102 JEF sing 250 n n O5 C13 JEF sing 251 n n C13 C15 JEF sing 252 n n C13 C14 JEF sing 253 n n C13 H13 JEF sing 254 n n C15 H151 JEF sing 255 n n C15 H152 JEF sing 256 n n C15 H153 JEF sing 257 n n C14 O6 JEF sing 258 n n C14 H141 JEF sing 259 n n C14 H142 JEF sing 260 n n O6 C16 JEF sing 261 n n C16 C30 JEF sing 262 n n C16 H161 JEF sing 263 n n C16 H162 JEF sing 264 n n C30 C31 JEF sing 265 n n C30 N1 JEF sing 266 n n C30 H30 JEF sing 267 n n C31 H311 JEF sing 268 n n C31 H312 JEF sing 269 n n C31 H313 JEF sing 270 n n N1 HN11 JEF sing 271 n n N1 HN12 JEF sing 272 n n C33 O11 JEF sing 273 n n # _atom_sites.entry_id 6WS6 _atom_sites.fract_transf_matrix[1][1] 0.007542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id JEF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id JEF _pdbx_nonpoly_scheme.auth_mon_id JEF _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C38 JEF . . . G 3 -3.051 5.54 4.328 1 79.22 ? C38 JEF 401 A 1 HETATM 2 O O12 JEF . . . G 3 -2.868 6.887 3.712 1 88.63 ? O12 JEF 401 A 1 HETATM 3 C C37 JEF . . . G 3 -4.076 7.226 2.923 1 82.72 ? C37 JEF 401 A 1 HETATM 4 C C36 JEF . . . G 3 -3.675 8.613 2.234 1 81.15 ? C36 JEF 401 A 1 HETATM 5 O O11 JEF . . . G 3 -4.779 8.927 1.288 1 109 ? O11 JEF 401 A 1 HETATM 6 C C33 JEF . . . G 3 -4.691 8.151 0.038 1 115.76 ? C33 JEF 401 A 1 HETATM 7 C C34 JEF . . . G 3 -6.114 7.668 -0.335 1 72.37 ? C34 JEF 401 A 1 HETATM 8 C C32 JEF . . . G 3 -4.119 9.159 -1.098 1 99.68 ? C32 JEF 401 A 1 HETATM 9 O O10 JEF . . . G 3 -4.886 10.4 -1.01 1 84.02 ? O10 JEF 401 A 1 HETATM 10 C C19 JEF . . . G 3 -3.992 11.62 -1.097 1 97.61 ? C19 JEF 401 A 1 HETATM 11 C C40 JEF . . . G 3 -3.359 11.597 -2.492 1 73.45 ? C40 JEF 401 A 1 HETATM 12 C C20 JEF . . . G 3 -5.065 12.802 -1.008 1 92.81 ? C20 JEF 401 A 1 HETATM 13 O O JEF . . . G 3 -4.598 13.785 -2.088 1 64.4 ? O JEF 401 A 1 HETATM 14 C C JEF . . . G 3 -5.638 14.78 -2.368 1 67.22 ? C JEF 401 A 1 HETATM 15 C C18 JEF . . . G 3 -5.919 15.54 -1.057 1 75.06 ? C18 JEF 401 A 1 HETATM 16 C C17 JEF . . . G 3 -6.926 13.89 -2.756 1 63.93 ? C17 JEF 401 A 1 HETATM 17 O OH JEF . . . G 3 -7.827 14.785 -3.558 1 73.74 ? OH JEF 401 A 1 HETATM 18 C C2 JEF . . . G 3 -8.779 13.98 -4.34 1 88.6 ? C2 JEF 401 A 1 HETATM 19 C C1 JEF . . . G 3 -9.197 14.912 -5.503 1 65 ? C1 JEF 401 A 1 HETATM 20 C C3 JEF . . . G 3 -10.054 13.8 -3.408 1 80.65 ? C3 JEF 401 A 1 HETATM 21 O O2 JEF . . . G 3 -10.291 12.295 -3.406 1 77.27 ? O2 JEF 401 A 1 HETATM 22 C C5 JEF . . . G 3 -11.578 11.966 -3.982 1 69.84 ? C5 JEF 401 A 1 HETATM 23 C C6 JEF . . . G 3 -11.358 10.787 -4.955 1 71.9 ? C6 JEF 401 A 1 HETATM 24 C C4 JEF . . . G 3 -12.48 11.491 -2.725 1 87.68 ? C4 JEF 401 A 1 HETATM 25 O O3 JEF . . . G 3 -11.827 12.027 -1.517 1 70.24 ? O3 JEF 401 A 1 HETATM 26 C C7 JEF . . . G 3 -12.647 11.703 -0.298 1 82.62 ? C7 JEF 401 A 1 HETATM 27 C C9 JEF . . . G 3 -12.424 10.196 -0.168 1 73.2 ? C9 JEF 401 A 1 HETATM 28 C C8 JEF . . . G 3 -11.92 12.435 0.923 1 68.15 ? C8 JEF 401 A 1 HETATM 29 O O4 JEF . . . G 3 -12.197 13.892 0.645 1 86.81 ? O4 JEF 401 A 1 HETATM 30 C C11 JEF . . . G 3 -12.735 14.574 1.854 1 73.82 ? C11 JEF 401 A 1 HETATM 31 C C12 JEF . . . G 3 -14.155 14.014 2.056 1 100.36 ? C12 JEF 401 A 1 HETATM 32 C C10 JEF . . . G 3 -12.824 16.123 1.433 1 75.96 ? C10 JEF 401 A 1 HETATM 33 O O5 JEF . . . G 3 -14.265 16.369 1.101 1 94.26 ? O5 JEF 401 A 1 HETATM 34 C C13 JEF . . . G 3 -14.425 17.371 0.017 1 77.59 ? C13 JEF 401 A 1 HETATM 35 C C15 JEF . . . G 3 -13.666 18.631 0.472 1 86.2 ? C15 JEF 401 A 1 HETATM 36 C C14 JEF . . . G 3 -16 17.713 -0.07 1 86.42 ? C14 JEF 401 A 1 HETATM 37 O O6 JEF . . . G 3 -16.666 16.404 -0.183 1 103.41 ? O6 JEF 401 A 1 HETATM 38 C C16 JEF . . . G 3 -18.047 16.57 -0.738 1 88.13 ? C16 JEF 401 A 1 HETATM 39 C C30 JEF . . . G 3 -19.041 15.853 0.296 1 129.08 ? C30 JEF 401 A 1 HETATM 40 C C31 JEF . . . G 3 -20.325 16.736 0.463 1 85.68 ? C31 JEF 401 A 1 HETATM 41 N N1 JEF . . . G 3 -19.467 14.553 -0.254 1 109.64 ? N1 JEF 401 A 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 180 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 41 #