data_6WTI # _model_server_result.job_id AApzB-jTW2_dWWJTia-DlQ _model_server_result.datetime_utc '2024-11-16 10:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 6WTI # _exptl.entry_id 6WTI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WTI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 106 A HIS 106 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc2 A ND1 HIS 284 A HIS 284 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc3 A NE2 HIS 333 A HIS 333 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc4 A NE2 HIS 334 A HIS 334 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc5 A NE2 HIS 419 A HIS 419 1_555 F FE HEO . A HEO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc6 A NE2 HIS 421 A HIS 421 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 261 n n CHA C4D HEM doub 262 n n CHA HHA HEM sing 263 n n CHB C4A HEM sing 264 n n CHB C1B HEM doub 265 n n CHB HHB HEM sing 266 n n CHC C4B HEM sing 267 n n CHC C1C HEM doub 268 n n CHC HHC HEM sing 269 n n CHD C4C HEM doub 270 n n CHD C1D HEM sing 271 n n CHD HHD HEM sing 272 n n C1A C2A HEM doub 273 n y C1A NA HEM sing 274 n y C2A C3A HEM sing 275 n y C2A CAA HEM sing 276 n n C3A C4A HEM doub 277 n y C3A CMA HEM sing 278 n n C4A NA HEM sing 279 n y CMA HMA HEM sing 280 n n CMA HMAA HEM sing 281 n n CMA HMAB HEM sing 282 n n CAA CBA HEM sing 283 n n CAA HAA HEM sing 284 n n CAA HAAA HEM sing 285 n n CBA CGA HEM sing 286 n n CBA HBA HEM sing 287 n n CBA HBAA HEM sing 288 n n CGA O1A HEM doub 289 n n CGA O2A HEM sing 290 n n C1B C2B HEM sing 291 n n C1B NB HEM sing 292 n n C2B C3B HEM doub 293 n n C2B CMB HEM sing 294 n n C3B C4B HEM sing 295 n n C3B CAB HEM sing 296 n n C4B NB HEM doub 297 n n CMB HMB HEM sing 298 n n CMB HMBA HEM sing 299 n n CMB HMBB HEM sing 300 n n CAB CBB HEM doub 301 n n CAB HAB HEM sing 302 n n CBB HBB HEM sing 303 n n CBB HBBA HEM sing 304 n n C1C C2C HEM sing 305 n y C1C NC HEM sing 306 n y C2C C3C HEM doub 307 n y C2C CMC HEM sing 308 n n C3C C4C HEM sing 309 n y C3C CAC HEM sing 310 n n C4C NC HEM sing 311 n y CMC HMC HEM sing 312 n n CMC HMCA HEM sing 313 n n CMC HMCB HEM sing 314 n n CAC CBC HEM doub 315 n n CAC HAC HEM sing 316 n n CBC HBC HEM sing 317 n n CBC HBCA HEM sing 318 n n C1D C2D HEM sing 319 n n C1D ND HEM doub 320 n n C2D C3D HEM doub 321 n n C2D CMD HEM sing 322 n n C3D C4D HEM sing 323 n n C3D CAD HEM sing 324 n n C4D ND HEM sing 325 n n CMD HMD HEM sing 326 n n CMD HMDA HEM sing 327 n n CMD HMDB HEM sing 328 n n CAD CBD HEM sing 329 n n CAD HAD HEM sing 330 n n CAD HADA HEM sing 331 n n CBD CGD HEM sing 332 n n CBD HBD HEM sing 333 n n CBD HBDA HEM sing 334 n n CGD O1D HEM doub 335 n n CGD O2D HEM sing 336 n n O2A H2A HEM sing 337 n n O2D H2D HEM sing 338 n n FE NA HEM sing 339 n n FE NB HEM sing 340 n n FE NC HEM sing 341 n n FE ND HEM sing 342 n n # _atom_sites.entry_id 6WTI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM A 1 1001 1001 HEM HEM . F 6 HEO A 1 1002 1801 HEO HEO . G 7 CU A 1 1003 1003 CU CU . H 8 UQ8 A 1 1004 1101 UQ8 LIG . I 9 3PE A 1 1005 1301 3PE 3PE . J 9 3PE A 1 1006 1401 3PE 3PE . K 9 3PE A 1 1007 1501 3PE 3PE . L 10 U9V A 1 1008 1601 U9V 3PE . M 9 3PE A 1 1009 1701 3PE 3PE . N 9 3PE B 1 401 301 3PE 3PE . O 9 3PE C 1 401 401 3PE 3PE . P 9 3PE C 1 402 501 3PE 3PE . Q 9 3PE D 1 201 311 3PE 3PE . R 9 3PE D 1 202 1201 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 156.126 164.804 142.5 1 24 ? CHA HEM 1001 A 1 HETATM 2 C CHB HEM . . . E 5 158.553 163.371 138.57 1 24 ? CHB HEM 1001 A 1 HETATM 3 C CHC HEM . . . E 5 162.704 163.354 141.12 1 24 ? CHC HEM 1001 A 1 HETATM 4 C CHD HEM . . . E 5 160.254 164.669 145.077 1 24 ? CHD HEM 1001 A 1 HETATM 5 C C1A HEM . . . E 5 156.459 164.436 141.223 1 24 ? C1A HEM 1001 A 1 HETATM 6 C C2A HEM . . . E 5 155.543 164.385 140.157 1 24 ? C2A HEM 1001 A 1 HETATM 7 C C3A HEM . . . E 5 156.219 163.982 139.055 1 24 ? C3A HEM 1001 A 1 HETATM 8 C C4A HEM . . . E 5 157.559 163.783 139.428 1 24 ? C4A HEM 1001 A 1 HETATM 9 C CMA HEM . . . E 5 155.654 163.783 137.669 1 24 ? CMA HEM 1001 A 1 HETATM 10 C CAA HEM . . . E 5 154.075 164.716 140.235 1 24 ? CAA HEM 1001 A 1 HETATM 11 C CBA HEM . . . E 5 153.734 165.801 139.22 1 24 ? CBA HEM 1001 A 1 HETATM 12 C CGA HEM . . . E 5 152.307 166.241 139.389 1 24 ? CGA HEM 1001 A 1 HETATM 13 O O1A HEM . . . E 5 151.629 166.561 138.394 1 24 ? O1A HEM 1001 A 1 HETATM 14 O O2A HEM . . . E 5 151.798 166.3 140.524 1 24 ? O2A HEM 1001 A 1 HETATM 15 C C1B HEM . . . E 5 159.888 163.267 138.966 1 24 ? C1B HEM 1001 A 1 HETATM 16 C C2B HEM . . . E 5 160.908 162.899 138.052 1 24 ? C2B HEM 1001 A 1 HETATM 17 C C3B HEM . . . E 5 162.075 162.881 138.741 1 24 ? C3B HEM 1001 A 1 HETATM 18 C C4B HEM . . . E 5 161.738 163.262 140.124 1 24 ? C4B HEM 1001 A 1 HETATM 19 C CMB HEM . . . E 5 160.742 162.57 136.594 1 24 ? CMB HEM 1001 A 1 HETATM 20 C CAB HEM . . . E 5 163.412 162.553 138.222 1 24 ? CAB HEM 1001 A 1 HETATM 21 C CBB HEM . . . E 5 163.745 161.288 137.989 1 24 ? CBB HEM 1001 A 1 HETATM 22 C C1C HEM . . . E 5 162.402 163.739 142.411 1 24 ? C1C HEM 1001 A 1 HETATM 23 C C2C HEM . . . E 5 163.34 163.931 143.426 1 24 ? C2C HEM 1001 A 1 HETATM 24 C C3C HEM . . . E 5 162.654 164.307 144.562 1 24 ? C3C HEM 1001 A 1 HETATM 25 C C4C HEM . . . E 5 161.272 164.343 144.223 1 24 ? C4C HEM 1001 A 1 HETATM 26 C CMC HEM . . . E 5 164.831 163.764 143.3 1 24 ? CMC HEM 1001 A 1 HETATM 27 C CAC HEM . . . E 5 163.283 164.613 145.857 1 24 ? CAC HEM 1001 A 1 HETATM 28 C CBC HEM . . . E 5 162.629 165.26 146.811 1 24 ? CBC HEM 1001 A 1 HETATM 29 C C1D HEM . . . E 5 158.933 164.809 144.646 1 24 ? C1D HEM 1001 A 1 HETATM 30 C C2D HEM . . . E 5 157.875 165.237 145.564 1 24 ? C2D HEM 1001 A 1 HETATM 31 C C3D HEM . . . E 5 156.747 165.269 144.849 1 24 ? C3D HEM 1001 A 1 HETATM 32 C C4D HEM . . . E 5 157.095 164.873 143.489 1 24 ? C4D HEM 1001 A 1 HETATM 33 C CMD HEM . . . E 5 158.004 165.57 147.026 1 24 ? CMD HEM 1001 A 1 HETATM 34 C CAD HEM . . . E 5 155.386 165.649 145.349 1 24 ? CAD HEM 1001 A 1 HETATM 35 C CBD HEM . . . E 5 154.595 164.4 145.727 1 24 ? CBD HEM 1001 A 1 HETATM 36 C CGD HEM . . . E 5 153.142 164.771 145.817 1 24 ? CGD HEM 1001 A 1 HETATM 37 O O1D HEM . . . E 5 152.798 165.965 145.738 1 24 ? O1D HEM 1001 A 1 HETATM 38 O O2D HEM . . . E 5 152.271 163.896 145.966 1 24 ? O2D HEM 1001 A 1 HETATM 39 N NA HEM . . . E 5 157.691 164.038 140.77 1 24 ? NA HEM 1001 A 1 HETATM 40 N NB HEM . . . E 5 160.414 163.478 140.18 1 24 ? NB HEM 1001 A 1 HETATM 41 N NC HEM . . . E 5 161.15 163.978 142.907 1 24 ? NC HEM 1001 A 1 HETATM 42 N ND HEM . . . E 5 158.411 164.604 143.422 1 24 ? ND HEM 1001 A 1 HETATM 43 FE FE HEM . . . E 5 159.325 164.065 141.893 1 24 ? FE HEM 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #