data_6WTI # _model_server_result.job_id g7ld17VxSCct39uW1ylrnw _model_server_result.datetime_utc '2024-11-16 10:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1004}' # _entry.id 6WTI # _exptl.entry_id 6WTI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 727.109 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ubiquinone-8 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WTI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 106 A HIS 106 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc2 A ND1 HIS 284 A HIS 284 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc3 A NE2 HIS 333 A HIS 333 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc4 A NE2 HIS 334 A HIS 334 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc5 A NE2 HIS 419 A HIS 419 1_555 F FE HEO . A HEO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc6 A NE2 HIS 421 A HIS 421 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C49 H74 O4' _chem_comp.formula_weight 727.109 _chem_comp.id UQ8 _chem_comp.mon_nstd_flag . _chem_comp.name Ubiquinone-8 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-dimethoxy-5-methyl-6-[(6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-oc taen-1-yl]cyclohexa-2,5-diene-1,4-dione' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C45 C44 UQ8 sing 794 n n C45 H45 UQ8 sing 795 n n C45 H45A UQ8 sing 796 n n C45 H45B UQ8 sing 797 n n C43 C44 UQ8 doub 798 n n C44 C46 UQ8 sing 799 n n C46 H46 UQ8 sing 800 n n C46 H46A UQ8 sing 801 n n C46 H46B UQ8 sing 802 n n C42 C43 UQ8 sing 803 n n C43 H43 UQ8 sing 804 n n C41 C42 UQ8 sing 805 n n C42 H42 UQ8 sing 806 n n C42 H42A UQ8 sing 807 n n C39 C41 UQ8 sing 808 n n C41 H41 UQ8 sing 809 n n C41 H41A UQ8 sing 810 n n C40 C39 UQ8 sing 811 n n C38 C39 UQ8 doub 812 n n C40 H40 UQ8 sing 813 n n C40 H40A UQ8 sing 814 n n C40 H40B UQ8 sing 815 e n C37 C38 UQ8 sing 816 n n C38 H38 UQ8 sing 817 n n C37 C36 UQ8 sing 818 n n C37 H37 UQ8 sing 819 n n C37 H37A UQ8 sing 820 n n C34 C36 UQ8 sing 821 n n C36 H36 UQ8 sing 822 n n C36 H36A UQ8 sing 823 n n C33 C34 UQ8 doub 824 n n C34 C35 UQ8 sing 825 n n C35 H35 UQ8 sing 826 n n C35 H35A UQ8 sing 827 n n C32 C33 UQ8 sing 828 e n C33 H33 UQ8 sing 829 n n C35 H35B UQ8 sing 830 n n C31 C32 UQ8 sing 831 n n C32 H32 UQ8 sing 832 n n C32 H32A UQ8 sing 833 n n C29 C31 UQ8 sing 834 n n C31 H31 UQ8 sing 835 n n C31 H31A UQ8 sing 836 n n C28 C29 UQ8 doub 837 n n C30 C29 UQ8 sing 838 n n C30 H30 UQ8 sing 839 n n C30 H30A UQ8 sing 840 n n C30 H30B UQ8 sing 841 e n C27 C28 UQ8 sing 842 n n C28 H28 UQ8 sing 843 n n C26 C27 UQ8 sing 844 n n C27 H27 UQ8 sing 845 n n C27 H27A UQ8 sing 846 n n C24 C26 UQ8 sing 847 n n C26 H26 UQ8 sing 848 n n C26 H26A UQ8 sing 849 n n C23 C24 UQ8 doub 850 n n C24 C25 UQ8 sing 851 n n C25 H25 UQ8 sing 852 n n C25 H25A UQ8 sing 853 n n C25 H25B UQ8 sing 854 e n C22 C23 UQ8 sing 855 n n C23 H23 UQ8 sing 856 n n C21 C22 UQ8 sing 857 n n C22 H22 UQ8 sing 858 n n C22 H22A UQ8 sing 859 n n C19 C21 UQ8 sing 860 n n C21 H21 UQ8 sing 861 n n C21 H21A UQ8 sing 862 n n C20 C19 UQ8 sing 863 n n C18 C19 UQ8 doub 864 n n C20 H20 UQ8 sing 865 n n C20 H20A UQ8 sing 866 n n C20 H20B UQ8 sing 867 e n C17 C18 UQ8 sing 868 n n C18 H18 UQ8 sing 869 n n C16 C17 UQ8 sing 870 n n C17 H17 UQ8 sing 871 n n C17 H17A UQ8 sing 872 n n C14 C16 UQ8 sing 873 n n C16 H16 UQ8 sing 874 n n C16 H16A UQ8 sing 875 n n C13 C14 UQ8 doub 876 n n C15 C14 UQ8 sing 877 n n C15 H15 UQ8 sing 878 n n C15 H15A UQ8 sing 879 n n C15 H15B UQ8 sing 880 e n C12 C13 UQ8 sing 881 n n C13 H13 UQ8 sing 882 n n C11 C12 UQ8 sing 883 n n C12 H12 UQ8 sing 884 n n C12 H12A UQ8 sing 885 n n C9 C11 UQ8 sing 886 n n C11 H11 UQ8 sing 887 n n C11 H11A UQ8 sing 888 n n C8 C9 UQ8 doub 889 n n C10 C9 UQ8 sing 890 n n C10 H10 UQ8 sing 891 n n C10 H10A UQ8 sing 892 n n C10 H10B UQ8 sing 893 e n C7 C8 UQ8 sing 894 n n C8 H8 UQ8 sing 895 n n C6 C7 UQ8 sing 896 n n C7 H7 UQ8 sing 897 n n C7 H7A UQ8 sing 898 n n C1 C6 UQ8 doub 899 n n C5 C6 UQ8 sing 900 n n C2 C1 UQ8 sing 901 n n C1 C1M UQ8 sing 902 n n C1M H1M UQ8 sing 903 n n C1M H1MA UQ8 sing 904 n n C1M H1MB UQ8 sing 905 n n O2 C2 UQ8 doub 906 n n C3 C2 UQ8 sing 907 n n O3 C3 UQ8 sing 908 n n C3 C4 UQ8 doub 909 n n C3M O3 UQ8 sing 910 n n C3M H3M UQ8 sing 911 n n C3M H3MA UQ8 sing 912 n n C3M H3MB UQ8 sing 913 n n O4 C4 UQ8 sing 914 n n C4 C5 UQ8 sing 915 n n C4M O4 UQ8 sing 916 n n C4M H4M UQ8 sing 917 n n C4M H4MA UQ8 sing 918 n n C4M H4MB UQ8 sing 919 n n C5 O5 UQ8 doub 920 n n # _atom_sites.entry_id 6WTI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM A 1 1001 1001 HEM HEM . F 6 HEO A 1 1002 1801 HEO HEO . G 7 CU A 1 1003 1003 CU CU . H 8 UQ8 A 1 1004 1101 UQ8 LIG . I 9 3PE A 1 1005 1301 3PE 3PE . J 9 3PE A 1 1006 1401 3PE 3PE . K 9 3PE A 1 1007 1501 3PE 3PE . L 10 U9V A 1 1008 1601 U9V 3PE . M 9 3PE A 1 1009 1701 3PE 3PE . N 9 3PE B 1 401 301 3PE 3PE . O 9 3PE C 1 401 401 3PE 3PE . P 9 3PE C 1 402 501 3PE 3PE . Q 9 3PE D 1 201 311 3PE 3PE . R 9 3PE D 1 202 1201 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C45 UQ8 . . . H 8 148.088 129.158 149.59 1 27.89 ? C45 UQ8 1004 A 1 HETATM 2 C C44 UQ8 . . . H 8 147.913 130.683 149.474 1 27.89 ? C44 UQ8 1004 A 1 HETATM 3 C C46 UQ8 . . . H 8 146.535 131.244 149.133 1 27.89 ? C46 UQ8 1004 A 1 HETATM 4 C C43 UQ8 . . . H 8 148.975 131.485 149.674 1 27.89 ? C43 UQ8 1004 A 1 HETATM 5 C C42 UQ8 . . . H 8 148.879 133.04 149.57 1 27.89 ? C42 UQ8 1004 A 1 HETATM 6 C C41 UQ8 . . . H 8 149.796 133.762 150.582 1 27.89 ? C41 UQ8 1004 A 1 HETATM 7 C C39 UQ8 . . . H 8 150.166 135.198 150.086 1 27.89 ? C39 UQ8 1004 A 1 HETATM 8 C C40 UQ8 . . . H 8 149.19 135.989 149.178 1 27.89 ? C40 UQ8 1004 A 1 HETATM 9 C C38 UQ8 . . . H 8 151.351 135.769 150.444 1 27.89 ? C38 UQ8 1004 A 1 HETATM 10 C C37 UQ8 . . . H 8 151.719 137.199 149.952 1 27.89 ? C37 UQ8 1004 A 1 HETATM 11 C C36 UQ8 . . . H 8 153.237 137.462 150.152 1 27.89 ? C36 UQ8 1004 A 1 HETATM 12 C C34 UQ8 . . . H 8 153.604 138.963 149.898 1 27.89 ? C34 UQ8 1004 A 1 HETATM 13 C C35 UQ8 . . . H 8 152.63 139.899 149.178 1 27.89 ? C35 UQ8 1004 A 1 HETATM 14 C C33 UQ8 . . . H 8 154.805 139.414 150.332 1 27.89 ? C33 UQ8 1004 A 1 HETATM 15 C C32 UQ8 . . . H 8 155.261 140.896 150.12 1 27.89 ? C32 UQ8 1004 A 1 HETATM 16 C C31 UQ8 . . . H 8 156.662 141.068 150.79 1 27.89 ? C31 UQ8 1004 A 1 HETATM 17 C C29 UQ8 . . . H 8 157.347 142.443 150.504 1 27.89 ? C29 UQ8 1004 A 1 HETATM 18 C C30 UQ8 . . . H 8 156.77 143.429 149.48 1 27.89 ? C30 UQ8 1004 A 1 HETATM 19 C C28 UQ8 . . . H 8 158.485 142.721 151.2 1 27.89 ? C28 UQ8 1004 A 1 HETATM 20 C C27 UQ8 . . . H 8 159.3 144.04 151.022 1 27.89 ? C27 UQ8 1004 A 1 HETATM 21 C C26 UQ8 . . . H 8 160.804 143.718 151.211 1 27.89 ? C26 UQ8 1004 A 1 HETATM 22 C C24 UQ8 . . . H 8 161.686 144.953 150.855 1 27.89 ? C24 UQ8 1004 A 1 HETATM 23 C C25 UQ8 . . . H 8 162.278 145.804 151.975 1 27.89 ? C25 UQ8 1004 A 1 HETATM 24 C C23 UQ8 . . . H 8 161.93 145.269 149.551 1 27.89 ? C23 UQ8 1004 A 1 HETATM 25 C C22 UQ8 . . . H 8 162.817 146.51 149.171 1 27.89 ? C22 UQ8 1004 A 1 HETATM 26 C C21 UQ8 . . . H 8 162.577 146.891 147.658 1 27.89 ? C21 UQ8 1004 A 1 HETATM 27 C C19 UQ8 . . . H 8 163.743 146.455 146.71 1 27.89 ? C19 UQ8 1004 A 1 HETATM 28 C C20 UQ8 . . . H 8 164.815 145.472 147.192 1 27.89 ? C20 UQ8 1004 A 1 HETATM 29 C C18 UQ8 . . . H 8 163.839 146.93 145.445 1 27.89 ? C18 UQ8 1004 A 1 HETATM 30 C C17 UQ8 . . . H 8 162.812 147.935 144.82 1 27.89 ? C17 UQ8 1004 A 1 HETATM 31 C C16 UQ8 . . . H 8 162.209 147.276 143.561 1 27.89 ? C16 UQ8 1004 A 1 HETATM 32 C C14 UQ8 . . . H 8 161.848 148.341 142.469 1 27.89 ? C14 UQ8 1004 A 1 HETATM 33 C C15 UQ8 . . . H 8 162.96 149.04 141.693 1 27.89 ? C15 UQ8 1004 A 1 HETATM 34 C C13 UQ8 . . . H 8 160.554 148.61 142.221 1 27.89 ? C13 UQ8 1004 A 1 HETATM 35 C C12 UQ8 . . . H 8 160.126 149.651 141.145 1 27.89 ? C12 UQ8 1004 A 1 HETATM 36 C C11 UQ8 . . . H 8 158.815 150.313 141.624 1 27.89 ? C11 UQ8 1004 A 1 HETATM 37 C C9 UQ8 . . . H 8 157.544 149.691 140.974 1 27.89 ? C9 UQ8 1004 A 1 HETATM 38 C C10 UQ8 . . . H 8 157.599 148.301 140.299 1 27.89 ? C10 UQ8 1004 A 1 HETATM 39 C C8 UQ8 . . . H 8 156.41 150.418 141.039 1 27.89 ? C8 UQ8 1004 A 1 HETATM 40 C C7 UQ8 . . . H 8 155.059 149.925 140.451 1 27.89 ? C7 UQ8 1004 A 1 HETATM 41 C C6 UQ8 . . . H 8 153.875 150.412 141.337 1 27.89 ? C6 UQ8 1004 A 1 HETATM 42 C C1 UQ8 . . . H 8 154.105 151.035 142.717 1 27.89 ? C1 UQ8 1004 A 1 HETATM 43 C C1M UQ8 . . . H 8 155.095 150.39 143.692 1 27.89 ? C1M UQ8 1004 A 1 HETATM 44 C C2 UQ8 . . . H 8 153.073 152.019 143.265 1 27.89 ? C2 UQ8 1004 A 1 HETATM 45 O O2 UQ8 . . . H 8 153.201 152.108 144.649 1 27.89 ? O2 UQ8 1004 A 1 HETATM 46 C C3 UQ8 . . . H 8 151.634 151.597 142.959 1 27.89 ? C3 UQ8 1004 A 1 HETATM 47 O O3 UQ8 . . . H 8 150.665 151.708 143.987 1 27.89 ? O3 UQ8 1004 A 1 HETATM 48 C C3M UQ8 . . . H 8 149.455 152.279 143.558 1 27.89 ? C3M UQ8 1004 A 1 HETATM 49 C C4 UQ8 . . . H 8 151.376 150.571 141.857 1 27.89 ? C4 UQ8 1004 A 1 HETATM 50 O O4 UQ8 . . . H 8 150.337 149.636 142.052 1 27.89 ? O4 UQ8 1004 A 1 HETATM 51 C C4M UQ8 . . . H 8 149.205 149.821 141.242 1 27.89 ? C4M UQ8 1004 A 1 HETATM 52 C C5 UQ8 . . . H 8 152.449 150.295 140.798 1 27.89 ? C5 UQ8 1004 A 1 HETATM 53 O O5 UQ8 . . . H 8 152.263 149.006 140.298 1 27.89 ? O5 UQ8 1004 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #