data_6WTJ # _model_server_result.job_id E-6czfYso_STZqfBz2cNjA _model_server_result.datetime_utc '2024-11-21 09:06:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wtj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6WTJ # _exptl.entry_id 6WTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.742 _cell.angle_gamma 90 _cell.entry_id 6WTJ _cell.length_a 114.97 _cell.length_b 53.81 _cell.length_c 45.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.25948 0 44.547862 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id K36 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id K36 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O8 S' _chem_comp.formula_weight 485.551 _chem_comp.id K36 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms GC376 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 K36 sing 173 n n C21 C20 K36 sing 174 n n C20 C24 K36 sing 175 n n C20 N19 K36 sing 176 n n C24 C25 K36 sing 177 n n C26 C27 K36 sing 178 n n C26 C25 K36 sing 179 n n C27 N28 K36 sing 180 n n O18 C17 K36 doub 181 n n N19 C17 K36 sing 182 n n C25 C29 K36 sing 183 n n C29 N28 K36 sing 184 n n C29 O30 K36 doub 185 n n C17 C12 K36 sing 186 n n C13 C12 K36 sing 187 n n C13 C14 K36 sing 188 n n C12 N11 K36 sing 189 n n C15 C14 K36 sing 190 n n C14 C16 K36 sing 191 n n N11 C9 K36 sing 192 n n O10 C9 K36 doub 193 n n C9 O8 K36 sing 194 n n O8 C7 K36 sing 195 n n C7 H1 K36 sing 196 n n C7 H2 K36 sing 197 n n N11 H4 K36 sing 198 n n C12 H5 K36 sing 199 n n C13 H6 K36 sing 200 n n C13 H7 K36 sing 201 n n C14 H8 K36 sing 202 n n C15 H9 K36 sing 203 n n C15 H10 K36 sing 204 n n C15 H11 K36 sing 205 n n C16 H12 K36 sing 206 n n C16 H13 K36 sing 207 n n C16 H14 K36 sing 208 n n N19 H15 K36 sing 209 n n C20 H16 K36 sing 210 n n C21 H17 K36 sing 211 n n O22 H19 K36 sing 212 n n C24 H20 K36 sing 213 n n C24 H21 K36 sing 214 n n C25 H22 K36 sing 215 n n C26 H23 K36 sing 216 n n C26 H24 K36 sing 217 n n C27 H25 K36 sing 218 n n C27 H26 K36 sing 219 n n N28 H27 K36 sing 220 n n C7 C1 K36 sing 221 n n C1 C2 K36 sing 222 n y C2 C3 K36 doub 223 n y C3 C4 K36 sing 224 n y C4 C5 K36 doub 225 n y C5 C6 K36 sing 226 n y C6 C1 K36 doub 227 n y C21 S1 K36 sing 228 n n S1 O1 K36 doub 229 n n S1 O2 K36 doub 230 n n S1 O3 K36 sing 231 n n C2 H3 K36 sing 232 n n C3 H18 K36 sing 233 n n C4 H28 K36 sing 234 n n C5 H29 K36 sing 235 n n C6 H30 K36 sing 236 n n O3 H31 K36 sing 237 n n # _atom_sites.entry_id 6WTJ _atom_sites.fract_transf_matrix[1][1] 0.008698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001808 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K36 A 1 401 1 K36 K36 . C 3 HOH A 1 501 43 HOH HOH . C 3 HOH A 2 502 9 HOH HOH . C 3 HOH A 3 503 59 HOH HOH . C 3 HOH A 4 504 23 HOH HOH . C 3 HOH A 5 505 58 HOH HOH . C 3 HOH A 6 506 18 HOH HOH . C 3 HOH A 7 507 11 HOH HOH . C 3 HOH A 8 508 6 HOH HOH . C 3 HOH A 9 509 49 HOH HOH . C 3 HOH A 10 510 4 HOH HOH . C 3 HOH A 11 511 15 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 22 HOH HOH . C 3 HOH A 14 514 44 HOH HOH . C 3 HOH A 15 515 3 HOH HOH . C 3 HOH A 16 516 55 HOH HOH . C 3 HOH A 17 517 31 HOH HOH . C 3 HOH A 18 518 5 HOH HOH . C 3 HOH A 19 519 24 HOH HOH . C 3 HOH A 20 520 17 HOH HOH . C 3 HOH A 21 521 2 HOH HOH . C 3 HOH A 22 522 53 HOH HOH . C 3 HOH A 23 523 52 HOH HOH . C 3 HOH A 24 524 35 HOH HOH . C 3 HOH A 25 525 54 HOH HOH . C 3 HOH A 26 526 25 HOH HOH . C 3 HOH A 27 527 32 HOH HOH . C 3 HOH A 28 528 1 HOH HOH . C 3 HOH A 29 529 8 HOH HOH . C 3 HOH A 30 530 10 HOH HOH . C 3 HOH A 31 531 57 HOH HOH . C 3 HOH A 32 532 40 HOH HOH . C 3 HOH A 33 533 34 HOH HOH . C 3 HOH A 34 534 7 HOH HOH . C 3 HOH A 35 535 14 HOH HOH . C 3 HOH A 36 536 13 HOH HOH . C 3 HOH A 37 537 16 HOH HOH . C 3 HOH A 38 538 29 HOH HOH . C 3 HOH A 39 539 47 HOH HOH . C 3 HOH A 40 540 19 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 26 HOH HOH . C 3 HOH A 43 543 36 HOH HOH . C 3 HOH A 44 544 46 HOH HOH . C 3 HOH A 45 545 38 HOH HOH . C 3 HOH A 46 546 20 HOH HOH . C 3 HOH A 47 547 27 HOH HOH . C 3 HOH A 48 548 21 HOH HOH . C 3 HOH A 49 549 51 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 30 HOH HOH . C 3 HOH A 52 552 48 HOH HOH . C 3 HOH A 53 553 39 HOH HOH . C 3 HOH A 54 554 37 HOH HOH . C 3 HOH A 55 555 33 HOH HOH . C 3 HOH A 56 556 28 HOH HOH . C 3 HOH A 57 557 42 HOH HOH . C 3 HOH A 58 558 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 K36 . . . B 2 -13.989 16.456 0.049 1 66.72 ? C7 K36 401 A 1 HETATM 2 O O8 K36 . . . B 2 -14.789 15.533 -0.677 1 62.15 ? O8 K36 401 A 1 HETATM 3 C C9 K36 . . . B 2 -15.196 14.4 0.063 1 57.51 ? C9 K36 401 A 1 HETATM 4 O O10 K36 . . . B 2 -15.126 14.394 1.245 1 56.57 ? O10 K36 401 A 1 HETATM 5 C C1 K36 . . . B 2 -12.491 16.243 -0.243 1 70.2 ? C1 K36 401 A 1 HETATM 6 C C2 K36 . . . B 2 -11.544 17.042 0.394 1 70.59 ? C2 K36 401 A 1 HETATM 7 C C3 K36 . . . B 2 -10.184 16.879 0.14 1 70.56 ? C3 K36 401 A 1 HETATM 8 C C4 K36 . . . B 2 -9.772 15.897 -0.748 1 71.56 ? C4 K36 401 A 1 HETATM 9 C C5 K36 . . . B 2 -10.715 15.088 -1.386 1 72.08 ? C5 K36 401 A 1 HETATM 10 C C6 K36 . . . B 2 -12.074 15.259 -1.14 1 71.47 ? C6 K36 401 A 1 HETATM 11 N N11 K36 . . . B 2 -15.707 13.22 -0.641 1 55.88 ? N11 K36 401 A 1 HETATM 12 C C12 K36 . . . B 2 -15.807 11.977 0.098 1 53.65 ? C12 K36 401 A 1 HETATM 13 C C17 K36 . . . B 2 -14.385 11.545 0.465 1 51.72 ? C17 K36 401 A 1 HETATM 14 O O18 K36 . . . B 2 -13.501 11.663 -0.319 1 52.8 ? O18 K36 401 A 1 HETATM 15 C C13 K36 . . . B 2 -16.442 10.891 -0.739 1 57.35 ? C13 K36 401 A 1 HETATM 16 C C14 K36 . . . B 2 -17.918 11.235 -0.943 1 61.59 ? C14 K36 401 A 1 HETATM 17 C C15 K36 . . . B 2 -18.633 11.251 0.403 1 61.17 ? C15 K36 401 A 1 HETATM 18 C C16 K36 . . . B 2 -18.577 10.214 -1.878 1 62.73 ? C16 K36 401 A 1 HETATM 19 N N19 K36 . . . B 2 -14.153 10.998 1.809 1 45.46 ? N19 K36 401 A 1 HETATM 20 C C20 K36 . . . B 2 -12.82 10.561 2.229 1 46.55 ? C20 K36 401 A 1 HETATM 21 C C21 K36 . . . B 2 -12.994 9.076 2.567 1 47.49 ? C21 K36 401 A 1 HETATM 22 O O22 K36 . . . B 2 -11.753 8.448 2.691 1 52.19 ? O22 K36 401 A 1 HETATM 23 C C24 K36 . . . B 2 -12.351 11.38 3.446 1 45.63 ? C24 K36 401 A 1 HETATM 24 C C25 K36 . . . B 2 -11.956 12.845 3.034 1 45.88 ? C25 K36 401 A 1 HETATM 25 C C26 K36 . . . B 2 -10.73 12.816 2.101 1 48.22 ? C26 K36 401 A 1 HETATM 26 C C27 K36 . . . B 2 -10.077 14.129 2.281 1 51.2 ? C27 K36 401 A 1 HETATM 27 N N28 K36 . . . B 2 -10.387 14.525 3.707 1 49.41 ? N28 K36 401 A 1 HETATM 28 C C29 K36 . . . B 2 -11.568 13.691 4.141 1 48.26 ? C29 K36 401 A 1 HETATM 29 O O30 K36 . . . B 2 -12.081 13.758 5.207 1 49.05 ? O30 K36 401 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #