data_6WTK # _model_server_result.job_id 5sofVrwanXhpi7FtlZPLJA _model_server_result.datetime_utc '2024-11-07 12:48:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6WTK # _exptl.entry_id 6WTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.03 _cell.angle_gamma 90 _cell.entry_id 6WTK _cell.length_a 113.35 _cell.length_b 53.03 _cell.length_c 45.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.427009 0 44.236686 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id UED _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id UED _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.768 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id UED _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GC373 bound form, GC376 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 UED sing 358 n n C3 C2 UED doub 359 n y C3 C4 UED sing 360 n y C2 C1 UED sing 361 n y C14 C13 UED sing 362 n n C14 C15 UED sing 363 n n C13 C12 UED sing 364 n n C4 C5 UED doub 365 n y O8 C7 UED sing 366 n n O8 C9 UED sing 367 n n N11 C12 UED sing 368 n n N11 C9 UED sing 369 n n C1 C7 UED sing 370 n n C1 C6 UED doub 371 n y O18 C17 UED doub 372 n n C5 C6 UED sing 373 n y C12 C17 UED sing 374 n n C9 O10 UED doub 375 n n C17 N19 UED sing 376 n n C26 C27 UED sing 377 n n C26 C25 UED sing 378 n n N19 C20 UED sing 379 n n C20 C21 UED sing 380 n n C20 C24 UED sing 381 n n C27 N28 UED sing 382 n n O22 C21 UED sing 383 n n C25 C24 UED sing 384 n n C25 C29 UED sing 385 n n N28 C29 UED sing 386 n n C29 O30 UED doub 387 n n C7 H1 UED sing 388 n n C7 H2 UED sing 389 n n C2 H3 UED sing 390 n n C3 H4 UED sing 391 n n C4 H5 UED sing 392 n n C5 H6 UED sing 393 n n C6 H7 UED sing 394 n n N11 H8 UED sing 395 n n C12 H9 UED sing 396 n n C13 H10 UED sing 397 n n C13 H11 UED sing 398 n n C14 H12 UED sing 399 n n C15 H13 UED sing 400 n n C15 H14 UED sing 401 n n C15 H15 UED sing 402 n n C16 H16 UED sing 403 n n C16 H17 UED sing 404 n n C16 H18 UED sing 405 n n N19 H19 UED sing 406 n n C20 H20 UED sing 407 n n C24 H21 UED sing 408 n n C24 H22 UED sing 409 n n C25 H23 UED sing 410 n n C26 H24 UED sing 411 n n C26 H25 UED sing 412 n n C27 H26 UED sing 413 n n C27 H27 UED sing 414 n n N28 H28 UED sing 415 n n C21 H29 UED sing 416 n n C21 H30 UED sing 417 n n O22 H31 UED sing 418 n n # _atom_sites.entry_id 6WTK _atom_sites.fract_transf_matrix[1][1] 0.008822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UED A 1 401 1 UED K36 . C 3 HOH A 1 501 38 HOH HOH . C 3 HOH A 2 502 20 HOH HOH . C 3 HOH A 3 503 12 HOH HOH . C 3 HOH A 4 504 15 HOH HOH . C 3 HOH A 5 505 3 HOH HOH . C 3 HOH A 6 506 8 HOH HOH . C 3 HOH A 7 507 23 HOH HOH . C 3 HOH A 8 508 14 HOH HOH . C 3 HOH A 9 509 2 HOH HOH . C 3 HOH A 10 510 6 HOH HOH . C 3 HOH A 11 511 10 HOH HOH . C 3 HOH A 12 512 1 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 18 HOH HOH . C 3 HOH A 15 515 22 HOH HOH . C 3 HOH A 16 516 4 HOH HOH . C 3 HOH A 17 517 5 HOH HOH . C 3 HOH A 18 518 27 HOH HOH . C 3 HOH A 19 519 16 HOH HOH . C 3 HOH A 20 520 9 HOH HOH . C 3 HOH A 21 521 32 HOH HOH . C 3 HOH A 22 522 30 HOH HOH . C 3 HOH A 23 523 11 HOH HOH . C 3 HOH A 24 524 36 HOH HOH . C 3 HOH A 25 525 7 HOH HOH . C 3 HOH A 26 526 33 HOH HOH . C 3 HOH A 27 527 25 HOH HOH . C 3 HOH A 28 528 21 HOH HOH . C 3 HOH A 29 529 17 HOH HOH . C 3 HOH A 30 530 26 HOH HOH . C 3 HOH A 31 531 34 HOH HOH . C 3 HOH A 32 532 29 HOH HOH . C 3 HOH A 33 533 37 HOH HOH . C 3 HOH A 34 534 31 HOH HOH . C 3 HOH A 35 535 24 HOH HOH . C 3 HOH A 36 536 19 HOH HOH . C 3 HOH A 37 537 35 HOH HOH . C 3 HOH A 38 538 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 UED . . . B 2 -13.735 -10.321 -0.082 1 66.59 ? C7 UED 401 A 1 HETATM 2 O O8 UED . . . B 2 -14.601 -11.267 -0.658 1 64.4 ? O8 UED 401 A 1 HETATM 3 C C9 UED . . . B 2 -14.89 -12.422 0.105 1 61.66 ? C9 UED 401 A 1 HETATM 4 O O10 UED . . . B 2 -14.768 -12.442 1.292 1 60.16 ? O10 UED 401 A 1 HETATM 5 C C1 UED . . . B 2 -12.246 -10.633 -0.363 1 68.91 ? C1 UED 401 A 1 HETATM 6 C C2 UED . . . B 2 -11.853 -11.774 -1.068 1 71.24 ? C2 UED 401 A 1 HETATM 7 C C3 UED . . . B 2 -10.498 -12.017 -1.294 1 71.1 ? C3 UED 401 A 1 HETATM 8 C C4 UED . . . B 2 -9.527 -11.13 -0.825 1 71.61 ? C4 UED 401 A 1 HETATM 9 C C5 UED . . . B 2 -9.908 -9.992 -0.123 1 70.97 ? C5 UED 401 A 1 HETATM 10 C C6 UED . . . B 2 -11.263 -9.754 0.106 1 69.35 ? C6 UED 401 A 1 HETATM 11 N N11 UED . . . B 2 -15.363 -13.602 -0.602 1 60.5 ? N11 UED 401 A 1 HETATM 12 C C12 UED . . . B 2 -15.54 -14.869 0.064 1 58.82 ? C12 UED 401 A 1 HETATM 13 C C17 UED . . . B 2 -14.164 -15.361 0.493 1 57.53 ? C17 UED 401 A 1 HETATM 14 O O18 UED . . . B 2 -13.296 -15.37 -0.305 1 58.35 ? O18 UED 401 A 1 HETATM 15 C C13 UED . . . B 2 -16.124 -15.842 -0.951 1 60.06 ? C13 UED 401 A 1 HETATM 16 C C14 UED . . . B 2 -17.639 -15.647 -1.058 1 60.14 ? C14 UED 401 A 1 HETATM 17 C C15 UED . . . B 2 -18.277 -15.956 0.289 1 58.65 ? C15 UED 401 A 1 HETATM 18 C C16 UED . . . B 2 -18.249 -16.581 -2.115 1 60.44 ? C16 UED 401 A 1 HETATM 19 N N19 UED . . . B 2 -13.898 -15.811 1.853 1 55.04 ? N19 UED 401 A 1 HETATM 20 C C20 UED . . . B 2 -12.563 -16.282 2.197 1 55.03 ? C20 UED 401 A 1 HETATM 21 C C21 UED . . . B 2 -12.66 -17.754 2.63 1 54.84 ? C21 UED 401 A 1 HETATM 22 O O22 UED . . . B 2 -11.412 -18.392 2.606 1 60.53 ? O22 UED 401 A 1 HETATM 23 C C24 UED . . . B 2 -12.028 -15.449 3.356 1 53.94 ? C24 UED 401 A 1 HETATM 24 C C25 UED . . . B 2 -11.672 -14.045 2.842 1 54.12 ? C25 UED 401 A 1 HETATM 25 C C26 UED . . . B 2 -10.515 -14.141 1.841 1 55.61 ? C26 UED 401 A 1 HETATM 26 C C27 UED . . . B 2 -9.553 -12.987 2.223 1 56.16 ? C27 UED 401 A 1 HETATM 27 N N28 UED . . . B 2 -9.921 -12.589 3.555 1 54.04 ? N28 UED 401 A 1 HETATM 28 C C29 UED . . . B 2 -11.21 -13.231 3.949 1 53.13 ? C29 UED 401 A 1 HETATM 29 O O30 UED . . . B 2 -11.782 -13.096 4.995 1 51.39 ? O30 UED 401 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #