data_6WTO # _model_server_result.job_id XJPwWZ8__VyJC0m2fetOLQ _model_server_result.datetime_utc '2024-11-28 23:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6WTO # _exptl.entry_id 6WTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WTO _cell.length_a 78.972 _cell.length_b 78.972 _cell.length_c 85.272 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 173 A GLU 1006 1_555 A N PTR 174 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PTR 174 A PTR 1007 1_555 A N PTR 175 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C PTR 175 A PTR 1008 1_555 A N LYS 176 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 129 n n C1 C2 EDO sing 130 n n C1 H11 EDO sing 131 n n C1 H12 EDO sing 132 n n O1 HO1 EDO sing 133 n n C2 O2 EDO sing 134 n n C2 H21 EDO sing 135 n n C2 H22 EDO sing 136 n n O2 HO2 EDO sing 137 n n # _atom_sites.entry_id 6WTO _atom_sites.fract_transf_matrix[1][1] 0.012663 _atom_sites.fract_transf_matrix[1][2] 0.007311 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1201 101 EDO EDO . C 2 EDO A 1 1202 102 EDO EDO . D 3 3JW A 1 1203 1 3JW 3JW . E 4 HOH A 1 1301 16 HOH HOH . E 4 HOH A 2 1302 82 HOH HOH . E 4 HOH A 3 1303 67 HOH HOH . E 4 HOH A 4 1304 26 HOH HOH . E 4 HOH A 5 1305 75 HOH HOH . E 4 HOH A 6 1306 95 HOH HOH . E 4 HOH A 7 1307 102 HOH HOH . E 4 HOH A 8 1308 55 HOH HOH . E 4 HOH A 9 1309 59 HOH HOH . E 4 HOH A 10 1310 41 HOH HOH . E 4 HOH A 11 1311 73 HOH HOH . E 4 HOH A 12 1312 46 HOH HOH . E 4 HOH A 13 1313 45 HOH HOH . E 4 HOH A 14 1314 29 HOH HOH . E 4 HOH A 15 1315 48 HOH HOH . E 4 HOH A 16 1316 33 HOH HOH . E 4 HOH A 17 1317 63 HOH HOH . E 4 HOH A 18 1318 12 HOH HOH . E 4 HOH A 19 1319 28 HOH HOH . E 4 HOH A 20 1320 38 HOH HOH . E 4 HOH A 21 1321 86 HOH HOH . E 4 HOH A 22 1322 85 HOH HOH . E 4 HOH A 23 1323 49 HOH HOH . E 4 HOH A 24 1324 43 HOH HOH . E 4 HOH A 25 1325 6 HOH HOH . E 4 HOH A 26 1326 11 HOH HOH . E 4 HOH A 27 1327 42 HOH HOH . E 4 HOH A 28 1328 51 HOH HOH . E 4 HOH A 29 1329 61 HOH HOH . E 4 HOH A 30 1330 104 HOH HOH . E 4 HOH A 31 1331 9 HOH HOH . E 4 HOH A 32 1332 54 HOH HOH . E 4 HOH A 33 1333 10 HOH HOH . E 4 HOH A 34 1334 14 HOH HOH . E 4 HOH A 35 1335 81 HOH HOH . E 4 HOH A 36 1336 25 HOH HOH . E 4 HOH A 37 1337 65 HOH HOH . E 4 HOH A 38 1338 47 HOH HOH . E 4 HOH A 39 1339 1 HOH HOH . E 4 HOH A 40 1340 37 HOH HOH . E 4 HOH A 41 1341 5 HOH HOH . E 4 HOH A 42 1342 52 HOH HOH . E 4 HOH A 43 1343 99 HOH HOH . E 4 HOH A 44 1344 4 HOH HOH . E 4 HOH A 45 1345 8 HOH HOH . E 4 HOH A 46 1346 17 HOH HOH . E 4 HOH A 47 1347 93 HOH HOH . E 4 HOH A 48 1348 2 HOH HOH . E 4 HOH A 49 1349 23 HOH HOH . E 4 HOH A 50 1350 20 HOH HOH . E 4 HOH A 51 1351 7 HOH HOH . E 4 HOH A 52 1352 66 HOH HOH . E 4 HOH A 53 1353 15 HOH HOH . E 4 HOH A 54 1354 40 HOH HOH . E 4 HOH A 55 1355 101 HOH HOH . E 4 HOH A 56 1356 74 HOH HOH . E 4 HOH A 57 1357 60 HOH HOH . E 4 HOH A 58 1358 62 HOH HOH . E 4 HOH A 59 1359 58 HOH HOH . E 4 HOH A 60 1360 57 HOH HOH . E 4 HOH A 61 1361 13 HOH HOH . E 4 HOH A 62 1362 35 HOH HOH . E 4 HOH A 63 1363 84 HOH HOH . E 4 HOH A 64 1364 100 HOH HOH . E 4 HOH A 65 1365 68 HOH HOH . E 4 HOH A 66 1366 77 HOH HOH . E 4 HOH A 67 1367 18 HOH HOH . E 4 HOH A 68 1368 30 HOH HOH . E 4 HOH A 69 1369 76 HOH HOH . E 4 HOH A 70 1370 22 HOH HOH . E 4 HOH A 71 1371 31 HOH HOH . E 4 HOH A 72 1372 53 HOH HOH . E 4 HOH A 73 1373 27 HOH HOH . E 4 HOH A 74 1374 21 HOH HOH . E 4 HOH A 75 1375 39 HOH HOH . E 4 HOH A 76 1376 44 HOH HOH . E 4 HOH A 77 1377 71 HOH HOH . E 4 HOH A 78 1378 24 HOH HOH . E 4 HOH A 79 1379 96 HOH HOH . E 4 HOH A 80 1380 78 HOH HOH . E 4 HOH A 81 1381 64 HOH HOH . E 4 HOH A 82 1382 32 HOH HOH . E 4 HOH A 83 1383 90 HOH HOH . E 4 HOH A 84 1384 91 HOH HOH . E 4 HOH A 85 1385 69 HOH HOH . E 4 HOH A 86 1386 50 HOH HOH . E 4 HOH A 87 1387 92 HOH HOH . E 4 HOH A 88 1388 79 HOH HOH . E 4 HOH A 89 1389 98 HOH HOH . E 4 HOH A 90 1390 56 HOH HOH . E 4 HOH A 91 1391 103 HOH HOH . E 4 HOH A 92 1392 3 HOH HOH . E 4 HOH A 93 1393 80 HOH HOH . E 4 HOH A 94 1394 97 HOH HOH . E 4 HOH A 95 1395 72 HOH HOH . E 4 HOH A 96 1396 83 HOH HOH . E 4 HOH A 97 1397 36 HOH HOH . E 4 HOH A 98 1398 70 HOH HOH . E 4 HOH A 99 1399 87 HOH HOH . E 4 HOH A 100 1400 19 HOH HOH . E 4 HOH A 101 1401 34 HOH HOH . E 4 HOH A 102 1402 94 HOH HOH . E 4 HOH A 103 1403 89 HOH HOH . E 4 HOH A 104 1404 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -35.812 -16.273 -8.12 1 62.36 ? C1 EDO 1201 A 1 HETATM 2 O O1 EDO . . . B 2 -36.546 -17.126 -9.005 1 60.32 ? O1 EDO 1201 A 1 HETATM 3 C C2 EDO . . . B 2 -35.033 -15.249 -8.935 1 61.9 ? C2 EDO 1201 A 1 HETATM 4 O O2 EDO . . . B 2 -34.08 -14.59 -8.095 1 61.3 ? O2 EDO 1201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #