data_6WTO
#
_model_server_result.job_id            ismp6jeF3NvNvWkaE4lxFg 
_model_server_result.datetime_utc      '2024-10-14 20:23:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    6WTO 
#
_exptl.entry_id    6WTO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6WTO 
_cell.length_a            78.972 
_cell.length_b            78.972 
_cell.length_c            85.272 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 173 A GLU 1006 1_555 A N PTR 174 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C PTR 174 A PTR 1007 1_555 A N PTR 175 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C PTR 175 A PTR 1008 1_555 A N LYS 176 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 129 n n 
C1 C2 EDO sing 130 n n 
C1 H11 EDO sing 131 n n 
C1 H12 EDO sing 132 n n 
O1 HO1 EDO sing 133 n n 
C2 O2 EDO sing 134 n n 
C2 H21 EDO sing 135 n n 
C2 H22 EDO sing 136 n n 
O2 HO2 EDO sing 137 n n 
#
_atom_sites.entry_id                     6WTO 
_atom_sites.fract_transf_matrix[1][1]    0.012663 
_atom_sites.fract_transf_matrix[1][2]    0.007311 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011727 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 1201 101 EDO EDO . 
C 2 EDO A 1 1202 102 EDO EDO . 
D 3 3JW A 1 1203 1 3JW 3JW . 
E 4 HOH A 1 1301 16 HOH HOH . 
E 4 HOH A 2 1302 82 HOH HOH . 
E 4 HOH A 3 1303 67 HOH HOH . 
E 4 HOH A 4 1304 26 HOH HOH . 
E 4 HOH A 5 1305 75 HOH HOH . 
E 4 HOH A 6 1306 95 HOH HOH . 
E 4 HOH A 7 1307 102 HOH HOH . 
E 4 HOH A 8 1308 55 HOH HOH . 
E 4 HOH A 9 1309 59 HOH HOH . 
E 4 HOH A 10 1310 41 HOH HOH . 
E 4 HOH A 11 1311 73 HOH HOH . 
E 4 HOH A 12 1312 46 HOH HOH . 
E 4 HOH A 13 1313 45 HOH HOH . 
E 4 HOH A 14 1314 29 HOH HOH . 
E 4 HOH A 15 1315 48 HOH HOH . 
E 4 HOH A 16 1316 33 HOH HOH . 
E 4 HOH A 17 1317 63 HOH HOH . 
E 4 HOH A 18 1318 12 HOH HOH . 
E 4 HOH A 19 1319 28 HOH HOH . 
E 4 HOH A 20 1320 38 HOH HOH . 
E 4 HOH A 21 1321 86 HOH HOH . 
E 4 HOH A 22 1322 85 HOH HOH . 
E 4 HOH A 23 1323 49 HOH HOH . 
E 4 HOH A 24 1324 43 HOH HOH . 
E 4 HOH A 25 1325 6 HOH HOH . 
E 4 HOH A 26 1326 11 HOH HOH . 
E 4 HOH A 27 1327 42 HOH HOH . 
E 4 HOH A 28 1328 51 HOH HOH . 
E 4 HOH A 29 1329 61 HOH HOH . 
E 4 HOH A 30 1330 104 HOH HOH . 
E 4 HOH A 31 1331 9 HOH HOH . 
E 4 HOH A 32 1332 54 HOH HOH . 
E 4 HOH A 33 1333 10 HOH HOH . 
E 4 HOH A 34 1334 14 HOH HOH . 
E 4 HOH A 35 1335 81 HOH HOH . 
E 4 HOH A 36 1336 25 HOH HOH . 
E 4 HOH A 37 1337 65 HOH HOH . 
E 4 HOH A 38 1338 47 HOH HOH . 
E 4 HOH A 39 1339 1 HOH HOH . 
E 4 HOH A 40 1340 37 HOH HOH . 
E 4 HOH A 41 1341 5 HOH HOH . 
E 4 HOH A 42 1342 52 HOH HOH . 
E 4 HOH A 43 1343 99 HOH HOH . 
E 4 HOH A 44 1344 4 HOH HOH . 
E 4 HOH A 45 1345 8 HOH HOH . 
E 4 HOH A 46 1346 17 HOH HOH . 
E 4 HOH A 47 1347 93 HOH HOH . 
E 4 HOH A 48 1348 2 HOH HOH . 
E 4 HOH A 49 1349 23 HOH HOH . 
E 4 HOH A 50 1350 20 HOH HOH . 
E 4 HOH A 51 1351 7 HOH HOH . 
E 4 HOH A 52 1352 66 HOH HOH . 
E 4 HOH A 53 1353 15 HOH HOH . 
E 4 HOH A 54 1354 40 HOH HOH . 
E 4 HOH A 55 1355 101 HOH HOH . 
E 4 HOH A 56 1356 74 HOH HOH . 
E 4 HOH A 57 1357 60 HOH HOH . 
E 4 HOH A 58 1358 62 HOH HOH . 
E 4 HOH A 59 1359 58 HOH HOH . 
E 4 HOH A 60 1360 57 HOH HOH . 
E 4 HOH A 61 1361 13 HOH HOH . 
E 4 HOH A 62 1362 35 HOH HOH . 
E 4 HOH A 63 1363 84 HOH HOH . 
E 4 HOH A 64 1364 100 HOH HOH . 
E 4 HOH A 65 1365 68 HOH HOH . 
E 4 HOH A 66 1366 77 HOH HOH . 
E 4 HOH A 67 1367 18 HOH HOH . 
E 4 HOH A 68 1368 30 HOH HOH . 
E 4 HOH A 69 1369 76 HOH HOH . 
E 4 HOH A 70 1370 22 HOH HOH . 
E 4 HOH A 71 1371 31 HOH HOH . 
E 4 HOH A 72 1372 53 HOH HOH . 
E 4 HOH A 73 1373 27 HOH HOH . 
E 4 HOH A 74 1374 21 HOH HOH . 
E 4 HOH A 75 1375 39 HOH HOH . 
E 4 HOH A 76 1376 44 HOH HOH . 
E 4 HOH A 77 1377 71 HOH HOH . 
E 4 HOH A 78 1378 24 HOH HOH . 
E 4 HOH A 79 1379 96 HOH HOH . 
E 4 HOH A 80 1380 78 HOH HOH . 
E 4 HOH A 81 1381 64 HOH HOH . 
E 4 HOH A 82 1382 32 HOH HOH . 
E 4 HOH A 83 1383 90 HOH HOH . 
E 4 HOH A 84 1384 91 HOH HOH . 
E 4 HOH A 85 1385 69 HOH HOH . 
E 4 HOH A 86 1386 50 HOH HOH . 
E 4 HOH A 87 1387 92 HOH HOH . 
E 4 HOH A 88 1388 79 HOH HOH . 
E 4 HOH A 89 1389 98 HOH HOH . 
E 4 HOH A 90 1390 56 HOH HOH . 
E 4 HOH A 91 1391 103 HOH HOH . 
E 4 HOH A 92 1392 3 HOH HOH . 
E 4 HOH A 93 1393 80 HOH HOH . 
E 4 HOH A 94 1394 97 HOH HOH . 
E 4 HOH A 95 1395 72 HOH HOH . 
E 4 HOH A 96 1396 83 HOH HOH . 
E 4 HOH A 97 1397 36 HOH HOH . 
E 4 HOH A 98 1398 70 HOH HOH . 
E 4 HOH A 99 1399 87 HOH HOH . 
E 4 HOH A 100 1400 19 HOH HOH . 
E 4 HOH A 101 1401 34 HOH HOH . 
E 4 HOH A 102 1402 94 HOH HOH . 
E 4 HOH A 103 1403 89 HOH HOH . 
E 4 HOH A 104 1404 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 -35.812 -16.273 -8.12 1 62.36 ? C1 EDO 1201 A 1 
HETATM 2 O O1 EDO . . . B 2 -36.546 -17.126 -9.005 1 60.32 ? O1 EDO 1201 A 1 
HETATM 3 C C2 EDO . . . B 2 -35.033 -15.249 -8.935 1 61.9 ? C2 EDO 1201 A 1 
HETATM 4 O O2 EDO . . . B 2 -34.08 -14.59 -8.095 1 61.3 ? O2 EDO 1201 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           629 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#