data_6WU6
#
_model_server_result.job_id            MpHGLX51qhX2Sw1YjWhj1A 
_model_server_result.datetime_utc      '2024-11-16 10:59:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wu6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":201}' 
#
_entry.id    6WU6 
#
_exptl.entry_id    6WU6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WU6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 P N N 
? 8 T N N 
? 8 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 62 B SER 62 1_555 M FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc2 A OG SER 62 B SER 62 1_555 M FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc3 A OD1 ASP 63 B ASP 63 1_555 M FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc4 A SG CYS 152 B CYS 152 1_555 N FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc5 A SG CYS 206 B CYS 206 1_555 O FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc6 B NE2 HIS 84 C HIS 84 1_555 P FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc7 P FE HEM . C HEM 201 1_555 C NE2 HIS 71 D HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc8 D OG SER 62 F SER 62 1_555 Q FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc9 D OG SER 62 F SER 62 1_555 Q FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc10 D OD1 ASP 63 F ASP 63 1_555 Q FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc11 D SG CYS 152 F CYS 152 1_555 R FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc12 D SG CYS 206 F CYS 206 1_555 S FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc13 E NE2 HIS 84 G HIS 84 1_555 T FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc14 T FE HEM . G HEM 201 1_555 F NE2 HIS 71 H HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc15 G OG SER 62 J SER 62 1_555 U FE2 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc16 G OG SER 62 J SER 62 1_555 U FE1 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc17 G OD1 ASP 63 J ASP 63 1_555 U FE2 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc18 G SG CYS 152 J CYS 152 1_555 V FE1 SF4 . J SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc19 G SG CYS 206 J CYS 206 1_555 W FE3 F3S . J F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc20 H NE2 HIS 84 K HIS 84 1_555 X FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc21 X FE HEM . K HEM 201 1_555 I NE2 HIS 71 L HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc22 J O GLY 358 A GLY 358 1_555 Z NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc23 K O GLY 358 E GLY 358 1_555 BA NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc24 L O GLY 358 I GLY 358 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 233 n n 
CHA C4D HEM doub 234 n n 
CHA HHA HEM sing 235 n n 
CHB C4A HEM sing 236 n n 
CHB C1B HEM doub 237 n n 
CHB HHB HEM sing 238 n n 
CHC C4B HEM sing 239 n n 
CHC C1C HEM doub 240 n n 
CHC HHC HEM sing 241 n n 
CHD C4C HEM doub 242 n n 
CHD C1D HEM sing 243 n n 
CHD HHD HEM sing 244 n n 
C1A C2A HEM doub 245 n y 
C1A NA HEM sing 246 n y 
C2A C3A HEM sing 247 n y 
C2A CAA HEM sing 248 n n 
C3A C4A HEM doub 249 n y 
C3A CMA HEM sing 250 n n 
C4A NA HEM sing 251 n y 
CMA HMA HEM sing 252 n n 
CMA HMAA HEM sing 253 n n 
CMA HMAB HEM sing 254 n n 
CAA CBA HEM sing 255 n n 
CAA HAA HEM sing 256 n n 
CAA HAAA HEM sing 257 n n 
CBA CGA HEM sing 258 n n 
CBA HBA HEM sing 259 n n 
CBA HBAA HEM sing 260 n n 
CGA O1A HEM doub 261 n n 
CGA O2A HEM sing 262 n n 
C1B C2B HEM sing 263 n n 
C1B NB HEM sing 264 n n 
C2B C3B HEM doub 265 n n 
C2B CMB HEM sing 266 n n 
C3B C4B HEM sing 267 n n 
C3B CAB HEM sing 268 n n 
C4B NB HEM doub 269 n n 
CMB HMB HEM sing 270 n n 
CMB HMBA HEM sing 271 n n 
CMB HMBB HEM sing 272 n n 
CAB CBB HEM doub 273 n n 
CAB HAB HEM sing 274 n n 
CBB HBB HEM sing 275 n n 
CBB HBBA HEM sing 276 n n 
C1C C2C HEM sing 277 n y 
C1C NC HEM sing 278 n y 
C2C C3C HEM doub 279 n y 
C2C CMC HEM sing 280 n n 
C3C C4C HEM sing 281 n y 
C3C CAC HEM sing 282 n n 
C4C NC HEM sing 283 n y 
CMC HMC HEM sing 284 n n 
CMC HMCA HEM sing 285 n n 
CMC HMCB HEM sing 286 n n 
CAC CBC HEM doub 287 n n 
CAC HAC HEM sing 288 n n 
CBC HBC HEM sing 289 n n 
CBC HBCA HEM sing 290 n n 
C1D C2D HEM sing 291 n n 
C1D ND HEM doub 292 n n 
C2D C3D HEM doub 293 n n 
C2D CMD HEM sing 294 n n 
C3D C4D HEM sing 295 n n 
C3D CAD HEM sing 296 n n 
C4D ND HEM sing 297 n n 
CMD HMD HEM sing 298 n n 
CMD HMDA HEM sing 299 n n 
CMD HMDB HEM sing 300 n n 
CAD CBD HEM sing 301 n n 
CAD HAD HEM sing 302 n n 
CAD HADA HEM sing 303 n n 
CBD CGD HEM sing 304 n n 
CBD HBD HEM sing 305 n n 
CBD HBDA HEM sing 306 n n 
CGD O1D HEM doub 307 n n 
CGD O2D HEM sing 308 n n 
O2A H2A HEM sing 309 n n 
O2D H2D HEM sing 310 n n 
FE NA HEM sing 311 n n 
FE NB HEM sing 312 n n 
FE NC HEM sing 313 n n 
FE ND HEM sing 314 n n 
#
_atom_sites.entry_id                     6WU6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 FES B 1 301 302 FES FES . 
N 6 SF4 B 1 302 303 SF4 SF4 . 
O 7 F3S B 1 303 304 F3S F3S . 
P 8 HEM C 1 201 1129 HEM HEM . 
Q 5 FES F 1 301 302 FES FES . 
R 6 SF4 F 1 302 303 SF4 SF4 . 
S 7 F3S F 1 303 304 F3S F3S . 
T 8 HEM G 1 201 1129 HEM HEM . 
U 5 FES J 1 301 302 FES FES . 
V 6 SF4 J 1 302 303 SF4 SF4 . 
W 7 F3S J 1 303 304 F3S F3S . 
X 8 HEM K 1 201 1129 HEM HEM . 
Y 9 FAD A 1 601 601 FAD FAD . 
Z 10 NA A 1 602 1590 NA NA . 
AA 9 FAD E 1 601 601 FAD FAD . 
BA 10 NA E 1 602 1590 NA NA . 
CA 9 FAD I 1 601 601 FAD FAD . 
DA 10 NA I 1 602 1590 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . X 8 171.824 143.617 140.678 1 28.13 ? CHA HEM 201 K 1 
HETATM 2 C CHB HEM . . . X 8 172.141 146.013 136.524 1 28.13 ? CHB HEM 201 K 1 
HETATM 3 C CHC HEM . . . X 8 169.657 142.496 134.426 1 28.13 ? CHC HEM 201 K 1 
HETATM 4 C CHD HEM . . . X 8 168.18 141.082 138.787 1 28.13 ? CHD HEM 201 K 1 
HETATM 5 C C1A HEM . . . X 8 172.339 144.365 139.657 1 28.13 ? C1A HEM 201 K 1 
HETATM 6 C C2A HEM . . . X 8 173.67 144.912 139.542 1 28.13 ? C2A HEM 201 K 1 
HETATM 7 C C3A HEM . . . X 8 173.754 145.574 138.4 1 28.13 ? C3A HEM 201 K 1 
HETATM 8 C C4A HEM . . . X 8 172.474 145.475 137.74 1 28.13 ? C4A HEM 201 K 1 
HETATM 9 C CMA HEM . . . X 8 174.997 146.318 137.87 1 28.13 ? CMA HEM 201 K 1 
HETATM 10 C CAA HEM . . . X 8 174.824 144.783 140.534 1 28.13 ? CAA HEM 201 K 1 
HETATM 11 C CBA HEM . . . X 8 174.821 146.028 141.392 1 28.13 ? CBA HEM 201 K 1 
HETATM 12 C CGA HEM . . . X 8 173.785 145.802 142.446 1 28.13 ? CGA HEM 201 K 1 
HETATM 13 O O1A HEM . . . X 8 172.581 145.965 142.145 1 28.13 ? O1A HEM 201 K 1 
HETATM 14 O O2A HEM . . . X 8 174.176 145.448 143.587 1 28.13 ? O2A HEM 201 K 1 
HETATM 15 C C1B HEM . . . X 8 171.559 145.258 135.544 1 28.13 ? C1B HEM 201 K 1 
HETATM 16 C C2B HEM . . . X 8 171.595 145.488 134.122 1 28.13 ? C2B HEM 201 K 1 
HETATM 17 C C3B HEM . . . X 8 170.909 144.519 133.529 1 28.13 ? C3B HEM 201 K 1 
HETATM 18 C C4B HEM . . . X 8 170.41 143.631 134.567 1 28.13 ? C4B HEM 201 K 1 
HETATM 19 C CMB HEM . . . X 8 172.307 146.656 133.412 1 28.13 ? CMB HEM 201 K 1 
HETATM 20 C CAB HEM . . . X 8 170.721 144.421 132.001 1 28.13 ? CAB HEM 201 K 1 
HETATM 21 C CBB HEM . . . X 8 170.064 143.42 131.411 1 28.13 ? CBB HEM 201 K 1 
HETATM 22 C C1C HEM . . . X 8 168.967 141.876 135.428 1 28.13 ? C1C HEM 201 K 1 
HETATM 23 C C2C HEM . . . X 8 167.882 140.956 135.243 1 28.13 ? C2C HEM 201 K 1 
HETATM 24 C C3C HEM . . . X 8 167.459 140.567 136.421 1 28.13 ? C3C HEM 201 K 1 
HETATM 25 C C4C HEM . . . X 8 168.273 141.216 137.425 1 28.13 ? C4C HEM 201 K 1 
HETATM 26 C CMC HEM . . . X 8 167.256 140.482 133.925 1 28.13 ? CMC HEM 201 K 1 
HETATM 27 C CAC HEM . . . X 8 166.296 139.569 136.568 1 28.13 ? CAC HEM 201 K 1 
HETATM 28 C CBC HEM . . . X 8 165.663 139.397 137.728 1 28.13 ? CBC HEM 201 K 1 
HETATM 29 C C1D HEM . . . X 8 169.013 141.69 139.691 1 28.13 ? C1D HEM 201 K 1 
HETATM 30 C C2D HEM . . . X 8 168.856 141.684 141.126 1 28.13 ? C2D HEM 201 K 1 
HETATM 31 C C3D HEM . . . X 8 169.856 142.388 141.653 1 28.13 ? C3D HEM 201 K 1 
HETATM 32 C C4D HEM . . . X 8 170.688 142.862 140.571 1 28.13 ? C4D HEM 201 K 1 
HETATM 33 C CMD HEM . . . X 8 167.718 140.984 141.888 1 28.13 ? CMD HEM 201 K 1 
HETATM 34 C CAD HEM . . . X 8 170.103 142.651 143.147 1 28.13 ? CAD HEM 201 K 1 
HETATM 35 C CBD HEM . . . X 8 170.852 141.469 143.736 1 28.13 ? CBD HEM 201 K 1 
HETATM 36 C CGD HEM . . . X 8 172.208 141.912 144.206 1 28.13 ? CGD HEM 201 K 1 
HETATM 37 O O1D HEM . . . X 8 173.224 141.427 143.65 1 28.13 ? O1D HEM 201 K 1 
HETATM 38 O O2D HEM . . . X 8 172.272 142.756 145.134 1 28.13 ? O2D HEM 201 K 1 
HETATM 39 N NA HEM . . . X 8 171.635 144.722 138.533 1 28.13 ? NA HEM 201 K 1 
HETATM 40 N NB HEM . . . X 8 170.831 144.118 135.78 1 28.13 ? NB HEM 201 K 1 
HETATM 41 N NC HEM . . . X 8 169.184 142.013 136.773 1 28.13 ? NC HEM 201 K 1 
HETATM 42 N ND HEM . . . X 8 170.142 142.419 139.385 1 28.13 ? ND HEM 201 K 1 
HETATM 43 FE FE HEM . . . X 8 170.376 143.382 137.612 1 28.13 ? FE HEM 201 K 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#