data_6WU6 # _model_server_result.job_id aiLNfGs6GH7YDLanEWQygw _model_server_result.datetime_utc '2024-11-16 10:33:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":601}' # _entry.id 6WU6 # _exptl.entry_id 6WU6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WU6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 Y N N ? 9 AA N N ? 9 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 62 B SER 62 1_555 M FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc2 A OG SER 62 B SER 62 1_555 M FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc3 A OD1 ASP 63 B ASP 63 1_555 M FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc4 A SG CYS 152 B CYS 152 1_555 N FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc5 A SG CYS 206 B CYS 206 1_555 O FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc6 B NE2 HIS 84 C HIS 84 1_555 P FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc7 P FE HEM . C HEM 201 1_555 C NE2 HIS 71 D HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 D OG SER 62 F SER 62 1_555 Q FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc9 D OG SER 62 F SER 62 1_555 Q FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc10 D OD1 ASP 63 F ASP 63 1_555 Q FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc11 D SG CYS 152 F CYS 152 1_555 R FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc12 D SG CYS 206 F CYS 206 1_555 S FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc13 E NE2 HIS 84 G HIS 84 1_555 T FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc14 T FE HEM . G HEM 201 1_555 F NE2 HIS 71 H HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc15 G OG SER 62 J SER 62 1_555 U FE2 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc16 G OG SER 62 J SER 62 1_555 U FE1 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc17 G OD1 ASP 63 J ASP 63 1_555 U FE2 FES . J FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc18 G SG CYS 152 J CYS 152 1_555 V FE1 SF4 . J SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc19 G SG CYS 206 J CYS 206 1_555 W FE3 F3S . J F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc20 H NE2 HIS 84 K HIS 84 1_555 X FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc21 X FE HEM . K HEM 201 1_555 I NE2 HIS 71 L HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc22 J O GLY 358 A GLY 358 1_555 Z NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc23 K O GLY 358 E GLY 358 1_555 BA NA NA . E NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc24 L O GLY 358 I GLY 358 1_555 DA NA NA . I NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 6WU6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 FES B 1 301 302 FES FES . N 6 SF4 B 1 302 303 SF4 SF4 . O 7 F3S B 1 303 304 F3S F3S . P 8 HEM C 1 201 1129 HEM HEM . Q 5 FES F 1 301 302 FES FES . R 6 SF4 F 1 302 303 SF4 SF4 . S 7 F3S F 1 303 304 F3S F3S . T 8 HEM G 1 201 1129 HEM HEM . U 5 FES J 1 301 302 FES FES . V 6 SF4 J 1 302 303 SF4 SF4 . W 7 F3S J 1 303 304 F3S F3S . X 8 HEM K 1 201 1129 HEM HEM . Y 9 FAD A 1 601 601 FAD FAD . Z 10 NA A 1 602 1590 NA NA . AA 9 FAD E 1 601 601 FAD FAD . BA 10 NA E 1 602 1590 NA NA . CA 9 FAD I 1 601 601 FAD FAD . DA 10 NA I 1 602 1590 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . Y 9 129.909 163.431 190.849 1 26.48 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . Y 9 128.791 163.429 189.876 1 26.48 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . Y 9 131.273 163.802 190.28 1 26.48 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . Y 9 130.018 162.02 191.502 1 26.48 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . Y 9 129.681 160.826 190.763 1 26.48 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . Y 9 130.936 160.097 190.35 1 26.48 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . Y 9 130.888 158.74 190.845 1 26.48 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . Y 9 131.123 159.95 188.848 1 26.48 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . Y 9 132.498 159.753 188.548 1 26.48 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . Y 9 130.318 158.688 188.56 1 26.48 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . Y 9 130.724 158.042 187.362 1 26.48 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . Y 9 130.706 157.841 189.766 1 26.48 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . Y 9 129.698 156.867 190.146 1 26.48 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . Y 9 128.392 156.828 189.74 1 26.48 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . Y 9 127.706 155.832 190.247 1 26.48 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . Y 9 128.628 155.17 191.042 1 26.48 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . Y 9 128.533 154.02 191.847 1 26.48 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . Y 9 127.411 153.315 192.002 1 26.48 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . Y 9 129.639 153.629 192.512 1 26.48 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . Y 9 130.761 154.335 192.367 1 26.48 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . Y 9 130.973 155.429 191.632 1 26.48 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . Y 9 129.86 155.796 190.988 1 26.48 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . Y 9 126.143 172.89 192.505 1 26.48 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . Y 9 126.12 173.716 193.593 1 26.48 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . Y 9 126.869 173.554 194.558 1 26.48 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . Y 9 125.242 174.774 193.634 1 26.48 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . Y 9 124.346 175.113 192.667 1 26.48 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . Y 9 123.613 176.088 192.818 1 26.48 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . Y 9 124.367 174.24 191.516 1 26.48 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . Y 9 123.553 174.495 190.562 1 26.48 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . Y 9 123.562 173.674 189.46 1 26.48 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . Y 9 122.677 173.954 188.427 1 26.48 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . Y 9 122.635 173.165 187.288 1 26.48 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . Y 9 121.659 173.496 186.191 1 26.48 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . Y 9 123.498 172.065 187.177 1 26.48 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . Y 9 123.468 171.19 185.956 1 26.48 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . Y 9 124.39 171.782 188.207 1 26.48 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . Y 9 124.427 172.576 189.349 1 26.48 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . Y 9 125.305 172.323 190.424 1 26.48 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . Y 9 125.305 173.148 191.524 1 26.48 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . Y 9 126.25 171.191 190.39 1 26.48 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . Y 9 125.575 169.831 190.566 1 26.48 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . Y 9 124.201 170.008 190.91 1 26.48 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . Y 9 126.277 169.043 191.675 1 26.48 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . Y 9 126.237 169.798 192.879 1 26.48 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . Y 9 127.724 168.64 191.383 1 26.48 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . Y 9 127.821 168.263 190.012 1 26.48 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . Y 9 128.217 167.523 192.279 1 26.48 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . Y 9 129.344 166.871 191.656 1 26.48 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . Y 9 130.22 165.814 192.436 1 26.48 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . Y 9 131.692 165.811 192.019 1 26.48 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . Y 9 130.112 166.046 193.872 1 26.48 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . Y 9 129.577 164.398 192.062 1 26.48 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #