data_6WV3 # _model_server_result.job_id 35G7P5pxspIyMMKcXCfbmA _model_server_result.datetime_utc '2025-02-17 03:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6WV3 # _exptl.entry_id 6WV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-WARFARIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WV3 _cell.length_a 153.161 _cell.length_b 70.854 _cell.length_c 47.356 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 183 A CYS 185 1_555 A SG CYS 191 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 272 A CYS 274 1_555 A SG CYS 275 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? # _chem_comp.formula 'C19 H16 O4' _chem_comp.formula_weight 308.328 _chem_comp.id SWF _chem_comp.mon_nstd_flag . _chem_comp.name S-WARFARIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SWF sing 395 n n C1 H1C1 SWF sing 396 n n C1 H1C2 SWF sing 397 n n C1 H1C3 SWF sing 398 n n C2 O3 SWF doub 399 n n C2 C4 SWF sing 400 n n C4 C5 SWF sing 401 n n C4 H4C1 SWF sing 402 n n C4 H4C2 SWF sing 403 n n C5 C6 SWF sing 404 n n C5 C12 SWF sing 405 n n C5 H5 SWF sing 406 n n C6 C7 SWF doub 407 n y C6 C11 SWF sing 408 n y C7 C8 SWF sing 409 n y C7 H7 SWF sing 410 n n C8 C9 SWF doub 411 n y C8 H8 SWF sing 412 n n C9 C10 SWF sing 413 n y C9 H9 SWF sing 414 n n C10 C11 SWF doub 415 n y C10 H10 SWF sing 416 n n C11 H11 SWF sing 417 n n C12 C13 SWF doub 418 n y C12 C22 SWF sing 419 n y C13 O14 SWF sing 420 n n C13 C15 SWF sing 421 n y O14 H14 SWF sing 422 n n C15 C16 SWF doub 423 n y C15 C20 SWF sing 424 n y C16 C17 SWF sing 425 n y C16 H16 SWF sing 426 n n C17 C18 SWF doub 427 n y C17 H17 SWF sing 428 n n C18 C19 SWF sing 429 n y C18 H18 SWF sing 430 n n C19 C20 SWF doub 431 n y C19 H19 SWF sing 432 n n C20 O21 SWF sing 433 n y O21 C22 SWF sing 434 n y C22 O23 SWF doub 435 n n # _atom_sites.entry_id 6WV3 _atom_sites.fract_transf_matrix[1][1] 0.006529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 401 341 OLC OLC . C 2 OLC A 1 402 342 OLC OLC . D 2 OLC A 1 403 343 OLC OLC . E 3 SWF A 1 404 3001 SWF SWF . F 4 HOH A 1 501 118 HOH HOH . F 4 HOH A 2 502 82 HOH HOH . F 4 HOH A 3 503 31 HOH HOH . F 4 HOH A 4 504 83 HOH HOH . F 4 HOH A 5 505 86 HOH HOH . F 4 HOH A 6 506 140 HOH HOH . F 4 HOH A 7 507 39 HOH HOH . F 4 HOH A 8 508 2 HOH HOH . F 4 HOH A 9 509 113 HOH HOH . F 4 HOH A 10 510 99 HOH HOH . F 4 HOH A 11 511 111 HOH HOH . F 4 HOH A 12 512 76 HOH HOH . F 4 HOH A 13 513 45 HOH HOH . F 4 HOH A 14 514 42 HOH HOH . F 4 HOH A 15 515 19 HOH HOH . F 4 HOH A 16 516 13 HOH HOH . F 4 HOH A 17 517 40 HOH HOH . F 4 HOH A 18 518 144 HOH HOH . F 4 HOH A 19 519 77 HOH HOH . F 4 HOH A 20 520 22 HOH HOH . F 4 HOH A 21 521 54 HOH HOH . F 4 HOH A 22 522 24 HOH HOH . F 4 HOH A 23 523 34 HOH HOH . F 4 HOH A 24 524 104 HOH HOH . F 4 HOH A 25 525 33 HOH HOH . F 4 HOH A 26 526 70 HOH HOH . F 4 HOH A 27 527 3 HOH HOH . F 4 HOH A 28 528 62 HOH HOH . F 4 HOH A 29 529 6 HOH HOH . F 4 HOH A 30 530 93 HOH HOH . F 4 HOH A 31 531 21 HOH HOH . F 4 HOH A 32 532 48 HOH HOH . F 4 HOH A 33 533 88 HOH HOH . F 4 HOH A 34 534 1 HOH HOH . F 4 HOH A 35 535 121 HOH HOH . F 4 HOH A 36 536 35 HOH HOH . F 4 HOH A 37 537 12 HOH HOH . F 4 HOH A 38 538 116 HOH HOH . F 4 HOH A 39 539 100 HOH HOH . F 4 HOH A 40 540 44 HOH HOH . F 4 HOH A 41 541 122 HOH HOH . F 4 HOH A 42 542 117 HOH HOH . F 4 HOH A 43 543 112 HOH HOH . F 4 HOH A 44 544 27 HOH HOH . F 4 HOH A 45 545 8 HOH HOH . F 4 HOH A 46 546 74 HOH HOH . F 4 HOH A 47 547 5 HOH HOH . F 4 HOH A 48 548 63 HOH HOH . F 4 HOH A 49 549 125 HOH HOH . F 4 HOH A 50 550 64 HOH HOH . F 4 HOH A 51 551 71 HOH HOH . F 4 HOH A 52 552 46 HOH HOH . F 4 HOH A 53 553 29 HOH HOH . F 4 HOH A 54 554 4 HOH HOH . F 4 HOH A 55 555 10 HOH HOH . F 4 HOH A 56 556 49 HOH HOH . F 4 HOH A 57 557 115 HOH HOH . F 4 HOH A 58 558 30 HOH HOH . F 4 HOH A 59 559 79 HOH HOH . F 4 HOH A 60 560 59 HOH HOH . F 4 HOH A 61 561 105 HOH HOH . F 4 HOH A 62 562 9 HOH HOH . F 4 HOH A 63 563 32 HOH HOH . F 4 HOH A 64 564 56 HOH HOH . F 4 HOH A 65 565 20 HOH HOH . F 4 HOH A 66 566 57 HOH HOH . F 4 HOH A 67 567 41 HOH HOH . F 4 HOH A 68 568 14 HOH HOH . F 4 HOH A 69 569 65 HOH HOH . F 4 HOH A 70 570 80 HOH HOH . F 4 HOH A 71 571 47 HOH HOH . F 4 HOH A 72 572 103 HOH HOH . F 4 HOH A 73 573 97 HOH HOH . F 4 HOH A 74 574 61 HOH HOH . F 4 HOH A 75 575 51 HOH HOH . F 4 HOH A 76 576 141 HOH HOH . F 4 HOH A 77 577 84 HOH HOH . F 4 HOH A 78 578 38 HOH HOH . F 4 HOH A 79 579 92 HOH HOH . F 4 HOH A 80 580 55 HOH HOH . F 4 HOH A 81 581 11 HOH HOH . F 4 HOH A 82 582 78 HOH HOH . F 4 HOH A 83 583 87 HOH HOH . F 4 HOH A 84 584 50 HOH HOH . F 4 HOH A 85 585 72 HOH HOH . F 4 HOH A 86 586 7 HOH HOH . F 4 HOH A 87 587 109 HOH HOH . F 4 HOH A 88 588 43 HOH HOH . F 4 HOH A 89 589 119 HOH HOH . F 4 HOH A 90 590 25 HOH HOH . F 4 HOH A 91 591 106 HOH HOH . F 4 HOH A 92 592 139 HOH HOH . F 4 HOH A 93 593 101 HOH HOH . F 4 HOH A 94 594 130 HOH HOH . F 4 HOH A 95 595 66 HOH HOH . F 4 HOH A 96 596 69 HOH HOH . F 4 HOH A 97 597 68 HOH HOH . F 4 HOH A 98 598 53 HOH HOH . F 4 HOH A 99 599 134 HOH HOH . F 4 HOH A 100 600 26 HOH HOH . F 4 HOH A 101 601 28 HOH HOH . F 4 HOH A 102 602 127 HOH HOH . F 4 HOH A 103 603 107 HOH HOH . F 4 HOH A 104 604 15 HOH HOH . F 4 HOH A 105 605 52 HOH HOH . F 4 HOH A 106 606 108 HOH HOH . F 4 HOH A 107 607 36 HOH HOH . F 4 HOH A 108 608 131 HOH HOH . F 4 HOH A 109 609 94 HOH HOH . F 4 HOH A 110 610 135 HOH HOH . F 4 HOH A 111 611 23 HOH HOH . F 4 HOH A 112 612 85 HOH HOH . F 4 HOH A 113 613 98 HOH HOH . F 4 HOH A 114 614 58 HOH HOH . F 4 HOH A 115 615 17 HOH HOH . F 4 HOH A 116 616 18 HOH HOH . F 4 HOH A 117 617 132 HOH HOH . F 4 HOH A 118 618 102 HOH HOH . F 4 HOH A 119 619 37 HOH HOH . F 4 HOH A 120 620 60 HOH HOH . F 4 HOH A 121 621 120 HOH HOH . F 4 HOH A 122 622 138 HOH HOH . F 4 HOH A 123 623 124 HOH HOH . F 4 HOH A 124 624 90 HOH HOH . F 4 HOH A 125 625 16 HOH HOH . F 4 HOH A 126 626 143 HOH HOH . F 4 HOH A 127 627 96 HOH HOH . F 4 HOH A 128 628 91 HOH HOH . F 4 HOH A 129 629 133 HOH HOH . F 4 HOH A 130 630 136 HOH HOH . F 4 HOH A 131 631 73 HOH HOH . F 4 HOH A 132 632 126 HOH HOH . F 4 HOH A 133 633 75 HOH HOH . F 4 HOH A 134 634 110 HOH HOH . F 4 HOH A 135 635 129 HOH HOH . F 4 HOH A 136 636 67 HOH HOH . F 4 HOH A 137 637 114 HOH HOH . F 4 HOH A 138 638 128 HOH HOH . F 4 HOH A 139 639 89 HOH HOH . F 4 HOH A 140 640 123 HOH HOH . F 4 HOH A 141 641 137 HOH HOH . F 4 HOH A 142 642 95 HOH HOH . F 4 HOH A 143 643 142 HOH HOH . F 4 HOH A 144 644 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SWF . . . E 3 -8.006 28.051 59.389 1 40.69 ? C1 SWF 404 A 1 HETATM 2 C C2 SWF . . . E 3 -8.856 26.806 59.555 1 51.47 ? C2 SWF 404 A 1 HETATM 3 O O3 SWF . . . E 3 -8.936 26.291 60.62 1 64.79 ? O3 SWF 404 A 1 HETATM 4 C C4 SWF . . . E 3 -9.596 26.21 58.362 1 43.19 ? C4 SWF 404 A 1 HETATM 5 C C5 SWF . . . E 3 -9.157 26.842 57.036 1 41.97 ? C5 SWF 404 A 1 HETATM 6 C C6 SWF . . . E 3 -8.054 26.034 56.338 1 37.51 ? C6 SWF 404 A 1 HETATM 7 C C7 SWF . . . E 3 -8.189 24.667 56.139 1 41.19 ? C7 SWF 404 A 1 HETATM 8 C C8 SWF . . . E 3 -7.191 23.951 55.498 1 37.3 ? C8 SWF 404 A 1 HETATM 9 C C9 SWF . . . E 3 -6.051 24.599 55.049 1 41.8 ? C9 SWF 404 A 1 HETATM 10 C C10 SWF . . . E 3 -5.915 25.965 55.241 1 39.91 ? C10 SWF 404 A 1 HETATM 11 C C11 SWF . . . E 3 -6.914 26.681 55.882 1 29.18 ? C11 SWF 404 A 1 HETATM 12 C C12 SWF . . . E 3 -10.345 26.985 56.078 1 41.68 ? C12 SWF 404 A 1 HETATM 13 C C13 SWF . . . E 3 -10.374 28.068 55.241 1 42.54 ? C13 SWF 404 A 1 HETATM 14 O O14 SWF . . . E 3 -9.246 28.754 54.771 1 33.93 ? O14 SWF 404 A 1 HETATM 15 C C15 SWF . . . E 3 -11.36 28.176 54.264 1 41.7 ? C15 SWF 404 A 1 HETATM 16 C C16 SWF . . . E 3 -11.284 29.157 53.259 1 35.92 ? C16 SWF 404 A 1 HETATM 17 C C17 SWF . . . E 3 -12.284 29.246 52.299 1 34.94 ? C17 SWF 404 A 1 HETATM 18 C C18 SWF . . . E 3 -13.364 28.369 52.33 1 31.28 ? C18 SWF 404 A 1 HETATM 19 C C19 SWF . . . E 3 -13.442 27.4 53.32 1 34.05 ? C19 SWF 404 A 1 HETATM 20 C C20 SWF . . . E 3 -12.428 27.313 54.291 1 43.06 ? C20 SWF 404 A 1 HETATM 21 O O21 SWF . . . E 3 -12.49 26.355 55.286 1 40.58 ? O21 SWF 404 A 1 HETATM 22 C C22 SWF . . . E 3 -11.337 26.01 55.926 1 38.25 ? C22 SWF 404 A 1 HETATM 23 O O23 SWF . . . E 3 -11.209 24.893 56.306 1 36.44 ? O23 SWF 404 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 23 #