data_6WV5 # _model_server_result.job_id hvQ4gSx9XvusBbC4yGK__A _model_server_result.datetime_utc '2024-11-15 15:05:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6WV5 # _exptl.entry_id 6WV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.711 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (2R,3R)-2-hydroxy-3-methyl-2-[(2E,7S)-3,7,11,15-tetramethylhexadec-2-en-1-yl]-2,3-dihydronaphthalene-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WV5 _cell.length_a 88.927 _cell.length_b 88.927 _cell.length_c 229.889 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 191 A CYS 193 1_555 A SG CYS 272 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C31 H48 O3' _chem_comp.formula_weight 468.711 _chem_comp.id UAV _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R)-2-hydroxy-3-methyl-2-[(2E,7S)-3,7,11,15-tetramethylhexadec-2-en-1-yl]-2,3-dihydronaphthalene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 UAV sing 397 n n C14 C19 UAV sing 398 n n C14 C13 UAV sing 399 n n C25 C13 UAV sing 400 n n C12 C13 UAV sing 401 n n C12 C11 UAV sing 402 n n C11 C10 UAV sing 403 n n C10 C9 UAV sing 404 n n C24 C9 UAV sing 405 n n C9 C8 UAV doub 406 e n C23 C16 UAV sing 407 n n C8 C7 UAV sing 408 n n C7 C17 UAV sing 409 n n C16 C15 UAV sing 410 n n C16 C17 UAV sing 411 n n O7 C15 UAV doub 412 n n C15 C1 UAV sing 413 n n C17 O19 UAV sing 414 n n C17 C18 UAV sing 415 n n C18 O8 UAV doub 416 n n C18 C6 UAV sing 417 n n C1 C6 UAV doub 418 n y C1 C2 UAV sing 419 n y C6 C5 UAV sing 420 n y C2 C3 UAV doub 421 n y C5 C4 UAV doub 422 n y C3 C4 UAV sing 423 n y C2 H2 UAV sing 424 n n C7 H71 UAV sing 425 n n C7 H7 UAV sing 426 n n C8 H8 UAV sing 427 n n C5 H5 UAV sing 428 n n C4 H4 UAV sing 429 n n C3 H3 UAV sing 430 n n C10 H101 UAV sing 431 n n C10 H10 UAV sing 432 n n C11 H111 UAV sing 433 n n C11 H11 UAV sing 434 n n C12 H121 UAV sing 435 n n C12 H12 UAV sing 436 n n C13 H13 UAV sing 437 n n C14 H141 UAV sing 438 n n C14 H14 UAV sing 439 n n C16 H16 UAV sing 440 n n C19 H191 UAV sing 441 n n C19 H19 UAV sing 442 n n C20 H201 UAV sing 443 n n C20 H1 UAV sing 444 n n C23 H232 UAV sing 445 n n C23 H23 UAV sing 446 n n C23 H231 UAV sing 447 n n C24 H241 UAV sing 448 n n C24 H242 UAV sing 449 n n C24 H24 UAV sing 450 n n C25 H251 UAV sing 451 n n C25 H252 UAV sing 452 n n C25 H25 UAV sing 453 n n O19 HO19 UAV sing 454 n n C20 C21 UAV sing 455 n n C21 C22 UAV sing 456 n n C22 C26 UAV sing 457 n n C26 C27 UAV sing 458 n n C27 C28 UAV sing 459 n n C28 C29 UAV sing 460 n n C28 C30 UAV sing 461 n n C21 C31 UAV sing 462 n n C21 H6 UAV sing 463 n n C22 H9 UAV sing 464 n n C22 H15 UAV sing 465 n n C26 H17 UAV sing 466 n n C26 H18 UAV sing 467 n n C27 H20 UAV sing 468 n n C27 H21 UAV sing 469 n n C28 H22 UAV sing 470 n n C29 H26 UAV sing 471 n n C29 H27 UAV sing 472 n n C29 H28 UAV sing 473 n n C30 H29 UAV sing 474 n n C30 H30 UAV sing 475 n n C30 H31 UAV sing 476 n n C31 H32 UAV sing 477 n n C31 H33 UAV sing 478 n n C31 H34 UAV sing 479 n n # _atom_sites.entry_id 6WV5 _atom_sites.fract_transf_matrix[1][1] 0.011245 _atom_sites.fract_transf_matrix[1][2] 0.006492 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id UAV _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id UAV _pdbx_nonpoly_scheme.auth_mon_id KO1 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UAV . . . B 2 4.059 -37.002 -47.127 1 56.02 ? C1 UAV 401 A 1 HETATM 2 C C2 UAV . . . B 2 5.137 -37.372 -46.33 1 56.16 ? C2 UAV 401 A 1 HETATM 3 C C6 UAV . . . B 2 3.017 -36.275 -46.602 1 59.64 ? C6 UAV 401 A 1 HETATM 4 C C7 UAV . . . B 2 0.382 -36.39 -49.47 1 74.63 ? C7 UAV 401 A 1 HETATM 5 C C8 UAV . . . B 2 0.696 -35.091 -50.193 1 69.76 ? C8 UAV 401 A 1 HETATM 6 O O8 UAV . . . B 2 1.319 -34.847 -47.425 1 56.48 ? O8 UAV 401 A 1 HETATM 7 O O7 UAV . . . B 2 5.079 -37.55 -49.154 1 57.52 ? O7 UAV 401 A 1 HETATM 8 C C5 UAV . . . B 2 3.013 -35.925 -45.259 1 66.93 ? C5 UAV 401 A 1 HETATM 9 C C4 UAV . . . B 2 4.086 -36.295 -44.451 1 63.85 ? C4 UAV 401 A 1 HETATM 10 C C3 UAV . . . B 2 5.147 -37.019 -44.987 1 59.14 ? C3 UAV 401 A 1 HETATM 11 C C10 UAV . . . B 2 0.346 -33.425 -52.003 1 59.38 ? C10 UAV 401 A 1 HETATM 12 C C11 UAV . . . B 2 1.719 -33.519 -52.659 1 51.75 ? C11 UAV 401 A 1 HETATM 13 C C12 UAV . . . B 2 1.878 -32.456 -53.742 1 55.69 ? C12 UAV 401 A 1 HETATM 14 C C13 UAV . . . B 2 3.232 -31.756 -53.68 1 54.68 ? C13 UAV 401 A 1 HETATM 15 C C14 UAV . . . B 2 3.266 -30.654 -54.736 1 50.01 ? C14 UAV 401 A 1 HETATM 16 C C15 UAV . . . B 2 4.021 -37.365 -48.577 1 57.48 ? C15 UAV 401 A 1 HETATM 17 C C16 UAV . . . B 2 2.718 -37.505 -49.33 1 58.94 ? C16 UAV 401 A 1 HETATM 18 C C17 UAV . . . B 2 1.498 -36.935 -48.567 1 65.04 ? C17 UAV 401 A 1 HETATM 19 C C18 UAV . . . B 2 1.893 -35.918 -47.523 1 58.33 ? C18 UAV 401 A 1 HETATM 20 C C19 UAV . . . B 2 4.36 -29.627 -54.463 1 52.31 ? C19 UAV 401 A 1 HETATM 21 C C20 UAV . . . B 2 4.491 -28.655 -55.63 1 59.77 ? C20 UAV 401 A 1 HETATM 22 C C23 UAV . . . B 2 2.961 -36.905 -50.718 1 60.05 ? C23 UAV 401 A 1 HETATM 23 C C24 UAV . . . B 2 -1.087 -35.588 -51.839 1 78.67 ? C24 UAV 401 A 1 HETATM 24 C C25 UAV . . . B 2 4.379 -32.74 -53.887 1 56.57 ? C25 UAV 401 A 1 HETATM 25 C C9 UAV . . . B 2 0.012 -34.721 -51.293 1 69.45 ? C9 UAV 401 A 1 HETATM 26 O O19 UAV . . . B 2 0.886 -38.036 -47.88 1 66.05 ? O19 UAV 401 A 1 HETATM 27 H H2 UAV . . . B 2 5.959 -37.937 -46.752 1 67.4 ? H2 UAV 401 A 1 HETATM 28 H H71 UAV . . . B 2 0.138 -37.15 -50.215 1 89.56 ? H71 UAV 401 A 1 HETATM 29 H H7 UAV . . . B 2 -0.513 -36.24 -48.862 1 89.56 ? H7 UAV 401 A 1 HETATM 30 H H8 UAV . . . B 2 1.482 -34.456 -49.821 1 83.71 ? H8 UAV 401 A 1 HETATM 31 H H5 UAV . . . B 2 2.188 -35.359 -44.845 1 80.32 ? H5 UAV 401 A 1 HETATM 32 H H4 UAV . . . B 2 4.095 -36.018 -43.404 1 76.62 ? H4 UAV 401 A 1 HETATM 33 H H3 UAV . . . B 2 5.98 -37.306 -44.357 1 70.97 ? H3 UAV 401 A 1 HETATM 34 H H101 UAV . . . B 2 -0.41 -33.218 -52.763 1 71.26 ? H101 UAV 401 A 1 HETATM 35 H H10 UAV . . . B 2 0.338 -32.602 -51.285 1 71.26 ? H10 UAV 401 A 1 HETATM 36 H H111 UAV . . . B 2 2.494 -33.387 -51.901 1 62.1 ? H111 UAV 401 A 1 HETATM 37 H H11 UAV . . . B 2 1.845 -34.51 -53.099 1 62.1 ? H11 UAV 401 A 1 HETATM 38 H H121 UAV . . . B 2 1.761 -32.923 -54.722 1 66.83 ? H121 UAV 401 A 1 HETATM 39 H H12 UAV . . . B 2 1.085 -31.713 -53.633 1 66.83 ? H12 UAV 401 A 1 HETATM 40 H H13 UAV . . . B 2 3.342 -31.294 -52.689 1 65.62 ? H13 UAV 401 A 1 HETATM 41 H H141 UAV . . . B 2 3.432 -31.102 -55.718 1 60.01 ? H141 UAV 401 A 1 HETATM 42 H H14 UAV . . . B 2 2.298 -30.15 -54.761 1 60.01 ? H14 UAV 401 A 1 HETATM 43 H H16 UAV . . . B 2 2.532 -38.579 -49.473 1 70.73 ? H16 UAV 401 A 1 HETATM 44 H H191 UAV . . . B 2 4.121 -29.073 -53.552 1 62.77 ? H191 UAV 401 A 1 HETATM 45 H H19 UAV . . . B 2 5.311 -30.139 -54.305 1 62.77 ? H19 UAV 401 A 1 HETATM 46 H H201 UAV . . . B 2 3.693 -27.912 -55.576 1 71.72 ? H201 UAV 401 A 1 HETATM 47 H H232 UAV . . . B 2 3.124 -35.862 -50.628 1 72.06 ? H232 UAV 401 A 1 HETATM 48 H H23 UAV . . . B 2 2.116 -37.079 -51.331 1 72.06 ? H23 UAV 401 A 1 HETATM 49 H H231 UAV . . . B 2 3.813 -37.359 -51.154 1 72.06 ? H231 UAV 401 A 1 HETATM 50 H H241 UAV . . . B 2 -1.502 -35.133 -52.7 1 94.4 ? H241 UAV 401 A 1 HETATM 51 H H242 UAV . . . B 2 -1.84 -35.707 -51.104 1 94.4 ? H242 UAV 401 A 1 HETATM 52 H H24 UAV . . . B 2 -0.693 -36.537 -52.097 1 94.4 ? H24 UAV 401 A 1 HETATM 53 H H251 UAV . . . B 2 4.282 -33.201 -54.835 1 67.88 ? H251 UAV 401 A 1 HETATM 54 H H252 UAV . . . B 2 4.35 -33.48 -53.13 1 67.88 ? H252 UAV 401 A 1 HETATM 55 H H25 UAV . . . B 2 5.302 -32.223 -53.839 1 67.88 ? H25 UAV 401 A 1 HETATM 56 H HO19 UAV . . . B 2 1.518 -38.418 -47.255 1 79.26 ? HO19 UAV 401 A 1 HETATM 57 H H20 UAV . . . B 2 5.446 -28.13 -55.56 1 71.72 ? H20 UAV 401 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 57 #