data_6WV6 # _model_server_result.job_id mvAok-3LBcgOgrrlQDvOsw _model_server_result.datetime_utc '2024-11-05 09:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6WV6 # _exptl.entry_id 6WV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WV6 _cell.length_a 155.019 _cell.length_b 84.878 _cell.length_c 42.558 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 183 A CYS 185 1_555 A SG CYS 191 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 272 A CYS 274 1_555 A SG CYS 275 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 278 n n C10 C9 OLC doub 279 n n C10 C11 OLC sing 280 n n C9 C8 OLC sing 281 n n C17 C16 OLC sing 282 z n C11 C12 OLC sing 283 n n C8 C7 OLC sing 284 n n C24 C22 OLC sing 285 n n C24 O25 OLC sing 286 n n C16 C15 OLC sing 287 n n C12 C13 OLC sing 288 n n C7 C6 OLC sing 289 n n C15 C14 OLC sing 290 n n C13 C14 OLC sing 291 n n C6 C5 OLC sing 292 n n C5 C4 OLC sing 293 n n C4 C3 OLC sing 294 n n C3 C2 OLC sing 295 n n C2 C1 OLC sing 296 n n C21 C22 OLC sing 297 n n C21 O20 OLC sing 298 n n C1 O19 OLC doub 299 n n C1 O20 OLC sing 300 n n C22 O23 OLC sing 301 n n C18 H18 OLC sing 302 n n C18 H18A OLC sing 303 n n C18 H18B OLC sing 304 n n C10 H10 OLC sing 305 n n C9 H9 OLC sing 306 n n C17 H17 OLC sing 307 n n C17 H17A OLC sing 308 n n C11 H11 OLC sing 309 n n C11 H11A OLC sing 310 n n C8 H8 OLC sing 311 n n C8 H8A OLC sing 312 n n C24 H24 OLC sing 313 n n C24 H24A OLC sing 314 n n C16 H16 OLC sing 315 n n C16 H16A OLC sing 316 n n C12 H12 OLC sing 317 n n C12 H12A OLC sing 318 n n C7 H7 OLC sing 319 n n C7 H7A OLC sing 320 n n C15 H15 OLC sing 321 n n C15 H15A OLC sing 322 n n C13 H13 OLC sing 323 n n C13 H13A OLC sing 324 n n C6 H6 OLC sing 325 n n C6 H6A OLC sing 326 n n C14 H14 OLC sing 327 n n C14 H14A OLC sing 328 n n C5 H5 OLC sing 329 n n C5 H5A OLC sing 330 n n C4 H4 OLC sing 331 n n C4 H4A OLC sing 332 n n C3 H3 OLC sing 333 n n C3 H3A OLC sing 334 n n C2 H2 OLC sing 335 n n C2 H2A OLC sing 336 n n C21 H21 OLC sing 337 n n C21 H21A OLC sing 338 n n C22 H22 OLC sing 339 n n O25 HO25 OLC sing 340 n n O23 HO23 OLC sing 341 n n # _atom_sites.entry_id 6WV6 _atom_sites.fract_transf_matrix[1][1] 0.006451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 401 1 OLC OLC . C 2 OLC A 1 402 2 OLC OLC . D 3 UAS A 1 403 1 UAS LIG . E 4 HOH A 1 501 19 HOH HOH . E 4 HOH A 2 502 20 HOH HOH . E 4 HOH A 3 503 18 HOH HOH . E 4 HOH A 4 504 24 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 9 HOH HOH . E 4 HOH A 7 507 10 HOH HOH . E 4 HOH A 8 508 32 HOH HOH . E 4 HOH A 9 509 17 HOH HOH . E 4 HOH A 10 510 2 HOH HOH . E 4 HOH A 11 511 6 HOH HOH . E 4 HOH A 12 512 31 HOH HOH . E 4 HOH A 13 513 8 HOH HOH . E 4 HOH A 14 514 3 HOH HOH . E 4 HOH A 15 515 7 HOH HOH . E 4 HOH A 16 516 14 HOH HOH . E 4 HOH A 17 517 12 HOH HOH . E 4 HOH A 18 518 1 HOH HOH . E 4 HOH A 19 519 16 HOH HOH . E 4 HOH A 20 520 22 HOH HOH . E 4 HOH A 21 521 4 HOH HOH . E 4 HOH A 22 522 30 HOH HOH . E 4 HOH A 23 523 27 HOH HOH . E 4 HOH A 24 524 15 HOH HOH . E 4 HOH A 25 525 11 HOH HOH . E 4 HOH A 26 526 23 HOH HOH . E 4 HOH A 27 527 26 HOH HOH . E 4 HOH A 28 528 33 HOH HOH . E 4 HOH A 29 529 13 HOH HOH . E 4 HOH A 30 530 25 HOH HOH . E 4 HOH A 31 531 21 HOH HOH . E 4 HOH A 32 532 28 HOH HOH . E 4 HOH A 33 533 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 OLC . . . B 2 157.714 75.593 63.044 1 49.1 ? C8 OLC 401 A 1 HETATM 2 C C24 OLC . . . B 2 162.637 70.06 54.461 1 53.02 ? C24 OLC 401 A 1 HETATM 3 C C7 OLC . . . B 2 157.106 75.755 61.651 1 57.04 ? C7 OLC 401 A 1 HETATM 4 C C6 OLC . . . B 2 158.167 75.328 60.631 1 65.72 ? C6 OLC 401 A 1 HETATM 5 C C5 OLC . . . B 2 157.701 75.537 59.188 1 44.07 ? C5 OLC 401 A 1 HETATM 6 C C4 OLC . . . B 2 158.943 75.396 58.309 1 43.11 ? C4 OLC 401 A 1 HETATM 7 C C3 OLC . . . B 2 158.657 74.427 57.165 1 51.96 ? C3 OLC 401 A 1 HETATM 8 C C2 OLC . . . B 2 159.657 73.266 57.204 1 59.87 ? C2 OLC 401 A 1 HETATM 9 C C21 OLC . . . B 2 160.976 70.593 56.246 1 57.63 ? C21 OLC 401 A 1 HETATM 10 C C1 OLC . . . B 2 159.594 72.454 55.899 1 67.47 ? C1 OLC 401 A 1 HETATM 11 C C22 OLC . . . B 2 161.45 69.513 55.266 1 69.19 ? C22 OLC 401 A 1 HETATM 12 O O19 OLC . . . B 2 159.463 73.033 54.866 1 71.11 ? O19 OLC 401 A 1 HETATM 13 O O25 OLC . . . B 2 162.731 69.357 53.252 1 53.12 ? O25 OLC 401 A 1 HETATM 14 O O23 OLC . . . B 2 161.788 68.316 55.944 1 53.81 ? O23 OLC 401 A 1 HETATM 15 O O20 OLC . . . B 2 159.698 71.046 55.898 1 50.58 ? O20 OLC 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #