data_6WV6 # _model_server_result.job_id 6TELcXwaP68hdCvOVZgl7Q _model_server_result.datetime_utc '2024-11-22 22:49:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6WV6 # _exptl.entry_id 6WV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.239 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Phenindione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WV6 _cell.length_a 155.019 _cell.length_b 84.878 _cell.length_c 42.558 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 183 A CYS 185 1_555 A SG CYS 191 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 272 A CYS 274 1_555 A SG CYS 275 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C15 H10 O2' _chem_comp.formula_weight 222.239 _chem_comp.id UAS _chem_comp.mon_nstd_flag . _chem_comp.name Phenindione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-phenyl-1H-indene-1,3(2H)-dione # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C10 UAS doub 463 n y C09 C08 UAS sing 464 n y C10 C11 UAS sing 465 n y C08 C07 UAS doub 466 n y C11 C02 UAS sing 467 n n C11 C06 UAS doub 468 n y O01 C02 UAS doub 469 n n C07 C06 UAS sing 470 n y C02 C03 UAS sing 471 n n C06 C04 UAS sing 472 n n C03 C04 UAS sing 473 n n C03 C12 UAS sing 474 n n C04 O05 UAS doub 475 n n C17 C12 UAS doub 476 n y C17 C16 UAS sing 477 n y C12 C13 UAS sing 478 n y C16 C15 UAS doub 479 n y C13 C14 UAS doub 480 n y C15 C14 UAS sing 481 n y C10 H101 UAS sing 482 n n C13 H131 UAS sing 483 n n C15 H151 UAS sing 484 n n C17 H171 UAS sing 485 n n C03 H031 UAS sing 486 n n C07 H071 UAS sing 487 n n C08 H081 UAS sing 488 n n C09 H091 UAS sing 489 n n C14 H141 UAS sing 490 n n C16 H161 UAS sing 491 n n # _atom_sites.entry_id 6WV6 _atom_sites.fract_transf_matrix[1][1] 0.006451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 401 1 OLC OLC . C 2 OLC A 1 402 2 OLC OLC . D 3 UAS A 1 403 1 UAS LIG . E 4 HOH A 1 501 19 HOH HOH . E 4 HOH A 2 502 20 HOH HOH . E 4 HOH A 3 503 18 HOH HOH . E 4 HOH A 4 504 24 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 9 HOH HOH . E 4 HOH A 7 507 10 HOH HOH . E 4 HOH A 8 508 32 HOH HOH . E 4 HOH A 9 509 17 HOH HOH . E 4 HOH A 10 510 2 HOH HOH . E 4 HOH A 11 511 6 HOH HOH . E 4 HOH A 12 512 31 HOH HOH . E 4 HOH A 13 513 8 HOH HOH . E 4 HOH A 14 514 3 HOH HOH . E 4 HOH A 15 515 7 HOH HOH . E 4 HOH A 16 516 14 HOH HOH . E 4 HOH A 17 517 12 HOH HOH . E 4 HOH A 18 518 1 HOH HOH . E 4 HOH A 19 519 16 HOH HOH . E 4 HOH A 20 520 22 HOH HOH . E 4 HOH A 21 521 4 HOH HOH . E 4 HOH A 22 522 30 HOH HOH . E 4 HOH A 23 523 27 HOH HOH . E 4 HOH A 24 524 15 HOH HOH . E 4 HOH A 25 525 11 HOH HOH . E 4 HOH A 26 526 23 HOH HOH . E 4 HOH A 27 527 26 HOH HOH . E 4 HOH A 28 528 33 HOH HOH . E 4 HOH A 29 529 13 HOH HOH . E 4 HOH A 30 530 25 HOH HOH . E 4 HOH A 31 531 21 HOH HOH . E 4 HOH A 32 532 28 HOH HOH . E 4 HOH A 33 533 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 UAS . . . D 3 167.096 69.999 48.793 1 46.03 ? C10 UAS 403 A 1 HETATM 2 C C13 UAS . . . D 3 165.835 67.539 54.364 1 36.61 ? C13 UAS 403 A 1 HETATM 3 C C15 UAS . . . D 3 163.947 66.143 54.928 1 51.9 ? C15 UAS 403 A 1 HETATM 4 C C17 UAS . . . D 3 164.529 66.484 52.658 1 47.46 ? C17 UAS 403 A 1 HETATM 5 C C02 UAS . . . D 3 165.82 68.698 50.813 1 39.81 ? C02 UAS 403 A 1 HETATM 6 C C03 UAS . . . D 3 166.464 67.923 51.94 1 48.09 ? C03 UAS 403 A 1 HETATM 7 C C04 UAS . . . D 3 167.569 68.891 52.303 1 45.94 ? C04 UAS 403 A 1 HETATM 8 C C06 UAS . . . D 3 168.027 69.571 50.988 1 44.91 ? C06 UAS 403 A 1 HETATM 9 C C07 UAS . . . D 3 169.226 70.215 50.64 1 39.07 ? C07 UAS 403 A 1 HETATM 10 C C08 UAS . . . D 3 169.365 70.751 49.347 1 40.33 ? C08 UAS 403 A 1 HETATM 11 C C09 UAS . . . D 3 168.288 70.638 48.425 1 47.28 ? C09 UAS 403 A 1 HETATM 12 C C11 UAS . . . D 3 166.97 69.46 50.108 1 37.18 ? C11 UAS 403 A 1 HETATM 13 C C12 UAS . . . D 3 165.571 67.32 53.026 1 44.75 ? C12 UAS 403 A 1 HETATM 14 C C14 UAS . . . D 3 165.011 66.954 55.311 1 49.14 ? C14 UAS 403 A 1 HETATM 15 C C16 UAS . . . D 3 163.706 65.905 53.601 1 36.98 ? C16 UAS 403 A 1 HETATM 16 O O01 UAS . . . D 3 164.679 68.747 50.505 1 53.27 ? O01 UAS 403 A 1 HETATM 17 O O05 UAS . . . D 3 168.043 69.121 53.363 1 51.47 ? O05 UAS 403 A 1 HETATM 18 H H101 UAS . . . D 3 166.395 69.926 48.186 1 54.82 ? H101 UAS 403 A 1 HETATM 19 H H131 UAS . . . D 3 166.553 68.071 54.625 1 43.53 ? H131 UAS 403 A 1 HETATM 20 H H151 UAS . . . D 3 163.398 65.762 55.574 1 61.87 ? H151 UAS 403 A 1 HETATM 21 H H171 UAS . . . D 3 164.381 66.311 51.756 1 56.55 ? H171 UAS 403 A 1 HETATM 22 H H031 UAS . . . D 3 166.786 67.109 51.521 1 57.3 ? H031 UAS 403 A 1 HETATM 23 H H071 UAS . . . D 3 169.919 70.287 51.256 1 46.47 ? H071 UAS 403 A 1 HETATM 24 H H081 UAS . . . D 3 170.154 71.174 49.098 1 47.99 ? H081 UAS 403 A 1 HETATM 25 H H091 UAS . . . D 3 168.375 70.993 47.57 1 56.32 ? H091 UAS 403 A 1 HETATM 26 H H141 UAS . . . D 3 165.171 67.104 56.215 1 58.55 ? H141 UAS 403 A 1 HETATM 27 H H161 UAS . . . D 3 162.998 65.361 53.34 1 43.96 ? H161 UAS 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #