data_6WVF # _model_server_result.job_id BepQasYtNo-JKsyys1VViQ _model_server_result.datetime_utc '2025-04-01 16:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6WVF # _exptl.entry_id 6WVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WVF _cell.length_a 53.381 _cell.length_b 53.381 _cell.length_c 280.74 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 180 1_555 A SG CYS 267 A CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 399 n n C1 C2 UQ1 sing 400 n n C1 C6 UQ1 sing 401 n n C2 O2 UQ1 sing 402 n n C2 C3 UQ1 doub 403 n n O2 CM2 UQ1 sing 404 n n CM2 HM21 UQ1 sing 405 n n CM2 HM22 UQ1 sing 406 n n CM2 HM23 UQ1 sing 407 n n C3 O3 UQ1 sing 408 n n C3 C4 UQ1 sing 409 n n O3 CM3 UQ1 sing 410 n n CM3 HM31 UQ1 sing 411 n n CM3 HM32 UQ1 sing 412 n n CM3 HM33 UQ1 sing 413 n n C4 O4 UQ1 doub 414 n n C4 C5 UQ1 sing 415 n n C5 CM5 UQ1 sing 416 n n C5 C6 UQ1 doub 417 n n CM5 HM51 UQ1 sing 418 n n CM5 HM52 UQ1 sing 419 n n CM5 HM53 UQ1 sing 420 n n C6 C7 UQ1 sing 421 n n C7 C8 UQ1 sing 422 n n C7 H71 UQ1 sing 423 n n C7 H72 UQ1 sing 424 n n C8 C9 UQ1 doub 425 n n C8 H8 UQ1 sing 426 n n C9 C10 UQ1 sing 427 n n C9 C11 UQ1 sing 428 n n C10 H101 UQ1 sing 429 n n C10 H102 UQ1 sing 430 n n C10 H103 UQ1 sing 431 n n C11 H111 UQ1 sing 432 n n C11 H112 UQ1 sing 433 n n C11 H113 UQ1 sing 434 n n # _atom_sites.entry_id 6WVF _atom_sites.fract_transf_matrix[1][1] 0.018733 _atom_sites.fract_transf_matrix[1][2] 0.010816 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UQ1 A 1 501 401 UQ1 UQ1 . C 3 HOH A 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . B 2 -23.249 27.713 14.846 1 152.99 ? C1 UQ1 501 A 1 HETATM 2 O O1 UQ1 . . . B 2 -23.707 28.352 13.958 1 155.19 ? O1 UQ1 501 A 1 HETATM 3 C C2 UQ1 . . . B 2 -23.107 28.409 16.194 1 158.43 ? C2 UQ1 501 A 1 HETATM 4 O O2 UQ1 . . . B 2 -23.533 29.735 16.304 1 162.18 ? O2 UQ1 501 A 1 HETATM 5 C CM2 UQ1 . . . B 2 -24.903 29.848 16.563 1 157.9 ? CM2 UQ1 501 A 1 HETATM 6 C C3 UQ1 . . . B 2 -22.527 27.678 17.401 1 152.3 ? C3 UQ1 501 A 1 HETATM 7 O O3 UQ1 . . . B 2 -22.406 28.322 18.641 1 158.38 ? O3 UQ1 501 A 1 HETATM 8 C CM3 UQ1 . . . B 2 -21.431 29.325 18.701 1 157.42 ? CM3 UQ1 501 A 1 HETATM 9 C C4 UQ1 . . . B 2 -22.08 26.229 17.25 1 135.9 ? C4 UQ1 501 A 1 HETATM 10 O O4 UQ1 . . . B 2 -21.623 25.651 18.175 1 129.38 ? O4 UQ1 501 A 1 HETATM 11 C C5 UQ1 . . . B 2 -22.215 25.527 15.904 1 132.4 ? C5 UQ1 501 A 1 HETATM 12 C CM5 UQ1 . . . B 2 -21.767 24.078 15.763 1 127.62 ? CM5 UQ1 501 A 1 HETATM 13 C C6 UQ1 . . . B 2 -22.796 26.254 14.693 1 142.11 ? C6 UQ1 501 A 1 HETATM 14 C C7 UQ1 . . . B 2 -22.889 25.466 13.382 1 147.22 ? C7 UQ1 501 A 1 HETATM 15 C C8 UQ1 . . . B 2 -23.671 26.195 12.294 1 152.31 ? C8 UQ1 501 A 1 HETATM 16 C C9 UQ1 . . . B 2 -24.07 25.568 11.218 1 158.49 ? C9 UQ1 501 A 1 HETATM 17 C C10 UQ1 . . . B 2 -24.851 26.318 10.146 1 153.5 ? C10 UQ1 501 A 1 HETATM 18 C C11 UQ1 . . . B 2 -23.754 24.091 11.047 1 164.65 ? C11 UQ1 501 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 519 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #