data_6WVG # _model_server_result.job_id G_PBMIxTWYRC3AN9I5KUFw _model_server_result.datetime_utc '2024-12-21 15:46:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6WVG # _exptl.entry_id 6WVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.29 _cell.angle_gamma 90 _cell.entry_id 6WVG _cell.length_a 49.31 _cell.length_b 209.77 _cell.length_c 73.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 286 A CYS 288 1_555 A SG CYS 312 A CYS 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 287 A CYS 289 1_555 A SG CYS 303 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 286 B CYS 288 1_555 B SG CYS 312 B CYS 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 287 B CYS 289 1_555 B SG CYS 303 B CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A ND2 ASN 271 A ASN 273 1_555 G C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 B C LEU 64 B LEU 64 1_555 B N1 CRO 65 B CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 B C3 CRO 65 B CRO 66 1_555 B N VAL 66 B VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B ND2 ASN 271 B ASN 273 1_555 I C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 308 n n C10 C9 OLC doub 309 n n C10 C11 OLC sing 310 n n C9 C8 OLC sing 311 n n C17 C16 OLC sing 312 z n C11 C12 OLC sing 313 n n C8 C7 OLC sing 314 n n C24 C22 OLC sing 315 n n C24 O25 OLC sing 316 n n C16 C15 OLC sing 317 n n C12 C13 OLC sing 318 n n C7 C6 OLC sing 319 n n C15 C14 OLC sing 320 n n C13 C14 OLC sing 321 n n C6 C5 OLC sing 322 n n C5 C4 OLC sing 323 n n C4 C3 OLC sing 324 n n C3 C2 OLC sing 325 n n C2 C1 OLC sing 326 n n C21 C22 OLC sing 327 n n C21 O20 OLC sing 328 n n C1 O19 OLC doub 329 n n C1 O20 OLC sing 330 n n C22 O23 OLC sing 331 n n C18 H18 OLC sing 332 n n C18 H18A OLC sing 333 n n C18 H18B OLC sing 334 n n C10 H10 OLC sing 335 n n C9 H9 OLC sing 336 n n C17 H17 OLC sing 337 n n C17 H17A OLC sing 338 n n C11 H11 OLC sing 339 n n C11 H11A OLC sing 340 n n C8 H8 OLC sing 341 n n C8 H8A OLC sing 342 n n C24 H24 OLC sing 343 n n C24 H24A OLC sing 344 n n C16 H16 OLC sing 345 n n C16 H16A OLC sing 346 n n C12 H12 OLC sing 347 n n C12 H12A OLC sing 348 n n C7 H7 OLC sing 349 n n C7 H7A OLC sing 350 n n C15 H15 OLC sing 351 n n C15 H15A OLC sing 352 n n C13 H13 OLC sing 353 n n C13 H13A OLC sing 354 n n C6 H6 OLC sing 355 n n C6 H6A OLC sing 356 n n C14 H14 OLC sing 357 n n C14 H14A OLC sing 358 n n C5 H5 OLC sing 359 n n C5 H5A OLC sing 360 n n C4 H4 OLC sing 361 n n C4 H4A OLC sing 362 n n C3 H3 OLC sing 363 n n C3 H3A OLC sing 364 n n C2 H2 OLC sing 365 n n C2 H2A OLC sing 366 n n C21 H21 OLC sing 367 n n C21 H21A OLC sing 368 n n C22 H22 OLC sing 369 n n O25 HO25 OLC sing 370 n n O23 HO23 OLC sing 371 n n # _atom_sites.entry_id 6WVG _atom_sites.fract_transf_matrix[1][1] 0.02028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 501 341 OLC OLC . D 2 OLC A 1 502 343 OLC OLC . E 2 OLC A 1 503 344 OLC OLC . F 2 OLC A 1 504 345 OLC OLC . G 3 NAG A 1 505 1023 NAG NAG . H 2 OLC B 1 501 342 OLC OLC . I 3 NAG B 1 502 1022 NAG NAG . J 4 HOH A 1 601 16 HOH HOH . J 4 HOH A 2 602 8 HOH HOH . J 4 HOH A 3 603 17 HOH HOH . J 4 HOH A 4 604 12 HOH HOH . J 4 HOH A 5 605 13 HOH HOH . J 4 HOH A 6 606 4 HOH HOH . J 4 HOH A 7 607 10 HOH HOH . J 4 HOH A 8 608 7 HOH HOH . J 4 HOH A 9 609 6 HOH HOH . J 4 HOH A 10 610 11 HOH HOH . J 4 HOH A 11 611 14 HOH HOH . J 4 HOH A 12 612 15 HOH HOH . K 4 HOH B 1 601 3 HOH HOH . K 4 HOH B 2 602 2 HOH HOH . K 4 HOH B 3 603 5 HOH HOH . K 4 HOH B 4 604 19 HOH HOH . K 4 HOH B 5 605 18 HOH HOH . K 4 HOH B 6 606 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . D 2 29.443 73.323 81.708 1 46.92 ? C10 OLC 502 A 1 HETATM 2 C C9 OLC . . . D 2 30.261 74.265 82.134 1 51.75 ? C9 OLC 502 A 1 HETATM 3 C C8 OLC . . . D 2 30.135 74.807 83.556 1 44.3 ? C8 OLC 502 A 1 HETATM 4 C C7 OLC . . . D 2 31.408 75.564 83.924 1 46.81 ? C7 OLC 502 A 1 HETATM 5 C C6 OLC . . . D 2 31.207 76.297 85.247 1 46 ? C6 OLC 502 A 1 HETATM 6 C C5 OLC . . . D 2 32.552 76.584 85.912 1 43.08 ? C5 OLC 502 A 1 HETATM 7 C C4 OLC . . . D 2 32.686 75.688 87.139 1 48.8 ? C4 OLC 502 A 1 HETATM 8 C C3 OLC . . . D 2 33.324 76.467 88.285 1 48.93 ? C3 OLC 502 A 1 HETATM 9 C C2 OLC . . . D 2 33.363 75.575 89.525 1 52.21 ? C2 OLC 502 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 551 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #