data_6WVG # _model_server_result.job_id jGrK74rTRDQLRjlbg6cCRg _model_server_result.datetime_utc '2024-12-21 16:13:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 6WVG # _exptl.entry_id 6WVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.29 _cell.angle_gamma 90 _cell.entry_id 6WVG _cell.length_a 49.31 _cell.length_b 209.77 _cell.length_c 73.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 286 A CYS 288 1_555 A SG CYS 312 A CYS 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 287 A CYS 289 1_555 A SG CYS 303 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 286 B CYS 288 1_555 B SG CYS 312 B CYS 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 287 B CYS 289 1_555 B SG CYS 303 B CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A C LEU 64 A LEU 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A ND2 ASN 271 A ASN 273 1_555 G C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 B C LEU 64 B LEU 64 1_555 B N1 CRO 65 B CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 B C3 CRO 65 B CRO 66 1_555 B N VAL 66 B VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B ND2 ASN 271 B ASN 273 1_555 I C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 278 n n C1 O1 NAG sing 279 n n C1 O5 NAG sing 280 n n C1 H1 NAG sing 281 n n C2 C3 NAG sing 282 n n C2 N2 NAG sing 283 n n C2 H2 NAG sing 284 n n C3 C4 NAG sing 285 n n C3 O3 NAG sing 286 n n C3 H3 NAG sing 287 n n C4 C5 NAG sing 288 n n C4 O4 NAG sing 289 n n C4 H4 NAG sing 290 n n C5 C6 NAG sing 291 n n C5 O5 NAG sing 292 n n C5 H5 NAG sing 293 n n C6 O6 NAG sing 294 n n C6 H61 NAG sing 295 n n C6 H62 NAG sing 296 n n C7 C8 NAG sing 297 n n C7 N2 NAG sing 298 n n C7 O7 NAG doub 299 n n C8 H81 NAG sing 300 n n C8 H82 NAG sing 301 n n C8 H83 NAG sing 302 n n N2 HN2 NAG sing 303 n n O1 HO1 NAG sing 304 n n O3 HO3 NAG sing 305 n n O4 HO4 NAG sing 306 n n O6 HO6 NAG sing 307 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WVG _atom_sites.fract_transf_matrix[1][1] 0.02028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 501 341 OLC OLC . D 2 OLC A 1 502 343 OLC OLC . E 2 OLC A 1 503 344 OLC OLC . F 2 OLC A 1 504 345 OLC OLC . G 3 NAG A 1 505 1023 NAG NAG . H 2 OLC B 1 501 342 OLC OLC . I 3 NAG B 1 502 1022 NAG NAG . J 4 HOH A 1 601 16 HOH HOH . J 4 HOH A 2 602 8 HOH HOH . J 4 HOH A 3 603 17 HOH HOH . J 4 HOH A 4 604 12 HOH HOH . J 4 HOH A 5 605 13 HOH HOH . J 4 HOH A 6 606 4 HOH HOH . J 4 HOH A 7 607 10 HOH HOH . J 4 HOH A 8 608 7 HOH HOH . J 4 HOH A 9 609 6 HOH HOH . J 4 HOH A 10 610 11 HOH HOH . J 4 HOH A 11 611 14 HOH HOH . J 4 HOH A 12 612 15 HOH HOH . K 4 HOH B 1 601 3 HOH HOH . K 4 HOH B 2 602 2 HOH HOH . K 4 HOH B 3 603 5 HOH HOH . K 4 HOH B 4 604 19 HOH HOH . K 4 HOH B 5 605 18 HOH HOH . K 4 HOH B 6 606 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 3 19.774 15.318 105.071 1 104.56 ? C1 NAG 502 B 1 HETATM 2 C C2 NAG . . . I 3 20.129 14.229 106.065 1 107.63 ? C2 NAG 502 B 1 HETATM 3 C C3 NAG . . . I 3 20.002 12.963 105.3 1 108.3 ? C3 NAG 502 B 1 HETATM 4 C C4 NAG . . . I 3 18.629 12.784 104.699 1 108.45 ? C4 NAG 502 B 1 HETATM 5 C C5 NAG . . . I 3 17.982 14.056 104.113 1 97.77 ? C5 NAG 502 B 1 HETATM 6 C C6 NAG . . . I 3 16.496 13.873 104.05 1 111.99 ? C6 NAG 502 B 1 HETATM 7 C C7 NAG . . . I 3 21.761 14.19 108.002 1 104.34 ? C7 NAG 502 B 1 HETATM 8 C C8 NAG . . . I 3 23.163 14.353 108.585 1 90.93 ? C8 NAG 502 B 1 HETATM 9 N N2 NAG . . . I 3 21.519 14.402 106.586 1 107.67 ? N2 NAG 502 B 1 HETATM 10 O O3 NAG . . . I 3 20.32 11.826 106.152 1 102.85 ? O3 NAG 502 B 1 HETATM 11 O O4 NAG . . . I 3 18.727 11.827 103.641 1 121.07 ? O4 NAG 502 B 1 HETATM 12 O O5 NAG . . . I 3 18.291 15.293 104.858 1 100.54 ? O5 NAG 502 B 1 HETATM 13 O O6 NAG . . . I 3 16.138 12.651 104.631 1 116.65 ? O6 NAG 502 B 1 HETATM 14 O O7 NAG . . . I 3 20.861 13.887 108.709 1 120.17 ? O7 NAG 502 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #