data_6WVL
#
_model_server_result.job_id            7PQ4sa4rWFBBevi9Xiqn6Q 
_model_server_result.datetime_utc      '2024-10-20 13:08:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    6WVL 
#
_exptl.entry_id    6WVL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WVL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O1G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc2 E O2G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc3 E O3B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc4 E O2B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc5 I O1G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc6 I O2G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc7 I O3B GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc8 I O2B GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     6WVL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GTP A 1 501 503 GTP GTP . 
F 4 MG A 1 502 504 MG MG . 
G 5 GDP B 1 501 501 GDP GDP . 
H 6 TA1 B 1 502 502 TA1 TA1 . 
I 3 GTP C 1 501 503 GTP GTP . 
J 4 MG C 1 502 504 MG MG . 
K 5 GDP D 1 501 501 GDP GDP . 
L 6 TA1 D 1 502 502 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . E 3 4.544 112.747 15.516 1 18.6 ? PG GTP 501 A 1 
HETATM 2 O O1G GTP . . . E 3 4.309 111.626 16.51 1 19.38 ? O1G GTP 501 A 1 
HETATM 3 O O2G GTP . . . E 3 5.929 112.54 14.976 1 19.63 ? O2G GTP 501 A 1 
HETATM 4 O O3G GTP . . . E 3 4.487 114.053 16.259 1 20.16 ? O3G GTP 501 A 1 
HETATM 5 O O3B GTP . . . E 3 3.435 112.844 14.442 1 17.32 ? O3B GTP 501 A 1 
HETATM 6 P PB GTP . . . E 3 3.381 111.739 13.305 1 19.08 ? PB GTP 501 A 1 
HETATM 7 O O1B GTP . . . E 3 4.305 112.146 12.156 1 20.52 ? O1B GTP 501 A 1 
HETATM 8 O O2B GTP . . . E 3 3.742 110.285 13.672 1 18.94 ? O2B GTP 501 A 1 
HETATM 9 O O3A GTP . . . E 3 1.916 111.946 12.683 1 19.1 ? O3A GTP 501 A 1 
HETATM 10 P PA GTP . . . E 3 0.597 111.633 13.493 1 20.07 ? PA GTP 501 A 1 
HETATM 11 O O1A GTP . . . E 3 0.541 112.064 14.965 1 21.86 ? O1A GTP 501 A 1 
HETATM 12 O O2A GTP . . . E 3 0.096 110.205 13.343 1 20.51 ? O2A GTP 501 A 1 
HETATM 13 O O5' GTP . . . E 3 -0.351 112.639 12.616 1 18.87 ? O5' GTP 501 A 1 
HETATM 14 C C5' GTP . . . E 3 -1.732 112.776 12.954 1 18.88 ? C5' GTP 501 A 1 
HETATM 15 C C4' GTP . . . E 3 -2.637 112.199 11.825 1 17.83 ? C4' GTP 501 A 1 
HETATM 16 O O4' GTP . . . E 3 -2.152 110.965 11.289 1 21.94 ? O4' GTP 501 A 1 
HETATM 17 C C3' GTP . . . E 3 -4.038 111.848 12.35 1 19.78 ? C3' GTP 501 A 1 
HETATM 18 O O3' GTP . . . E 3 -5.002 112.785 11.876 1 22.88 ? O3' GTP 501 A 1 
HETATM 19 C C2' GTP . . . E 3 -4.31 110.414 11.894 1 21.39 ? C2' GTP 501 A 1 
HETATM 20 O O2' GTP . . . E 3 -5.668 110.165 11.489 1 22.61 ? O2' GTP 501 A 1 
HETATM 21 C C1' GTP . . . E 3 -3.26 110.195 10.8 1 21.05 ? C1' GTP 501 A 1 
HETATM 22 N N9 GTP . . . E 3 -2.812 108.827 10.703 1 19.41 ? N9 GTP 501 A 1 
HETATM 23 C C8 GTP . . . E 3 -1.877 108.239 11.528 1 22.15 ? C8 GTP 501 A 1 
HETATM 24 N N7 GTP . . . E 3 -1.649 106.96 11.223 1 22.25 ? N7 GTP 501 A 1 
HETATM 25 C C5 GTP . . . E 3 -2.44 106.743 10.098 1 21.57 ? C5 GTP 501 A 1 
HETATM 26 C C6 GTP . . . E 3 -2.561 105.512 9.287 1 22.74 ? C6 GTP 501 A 1 
HETATM 27 O O6 GTP . . . E 3 -1.922 104.465 9.4 1 25.49 ? O6 GTP 501 A 1 
HETATM 28 N N1 GTP . . . E 3 -3.437 105.662 8.273 1 21.85 ? N1 GTP 501 A 1 
HETATM 29 C C2 GTP . . . E 3 -4.161 106.783 8.088 1 22.68 ? C2 GTP 501 A 1 
HETATM 30 N N2 GTP . . . E 3 -5.021 106.692 7.09 1 22.58 ? N2 GTP 501 A 1 
HETATM 31 N N3 GTP . . . E 3 -4.12 107.901 8.786 1 20.75 ? N3 GTP 501 A 1 
HETATM 32 C C4 GTP . . . E 3 -3.169 107.861 9.803 1 19.41 ? C4 GTP 501 A 1 
HETATM 33 H H5' GTP . . . E 3 -1.982 113.835 13.086 1 22.66 ? H5' GTP 501 A 1 
HETATM 34 H "H5''" GTP . . . E 3 -1.962 112.307 13.918 1 22.66 ? "H5''" GTP 501 A 1 
HETATM 35 H H4' GTP . . . E 3 -2.713 112.942 11.023 1 21.41 ? H4' GTP 501 A 1 
HETATM 36 H H3' GTP . . . E 3 -4.043 111.837 13.446 1 23.75 ? H3' GTP 501 A 1 
HETATM 37 H HO3' GTP . . . E 3 -5.003 113.502 12.533 1 27.47 ? HO3' GTP 501 A 1 
HETATM 38 H H2' GTP . . . E 3 -4.033 109.77 12.738 1 25.68 ? H2' GTP 501 A 1 
HETATM 39 H HO2' GTP . . . E 3 -5.838 110.736 10.721 1 27.15 ? HO2' GTP 501 A 1 
HETATM 40 H H1' GTP . . . E 3 -3.595 110.564 9.824 1 25.28 ? H1' GTP 501 A 1 
HETATM 41 H H8 GTP . . . E 3 -1.432 108.753 12.37 1 26.59 ? H8 GTP 501 A 1 
HETATM 42 H HN1 GTP . . . E 3 -3.584 104.878 7.653 1 26.23 ? HN1 GTP 501 A 1 
HETATM 43 H HN21 GTP . . . E 3 -4.755 106.012 6.392 1 27.11 ? HN21 GTP 501 A 1 
HETATM 44 H HN22 GTP . . . E 3 -5.26 107.614 6.759 1 27.11 ? HN22 GTP 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#