data_6WVR # _model_server_result.job_id tW75q2MVBXY64QmTEKsPGQ _model_server_result.datetime_utc '2024-11-14 17:54:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6WVR # _exptl.entry_id 6WVR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WVR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O1G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc2 E O2G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 E O3B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc4 E O2B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc5 I O1G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc6 I O2G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 I O3B GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc8 I O2B GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 6WVR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 501 503 GTP GTP . F 4 MG A 1 502 504 MG MG . G 5 GDP B 1 501 501 GDP GDP . H 6 TA1 B 1 502 502 TA1 TA1 . I 3 GTP C 1 501 503 GTP GTP . J 4 MG C 1 502 504 MG MG . K 5 GDP D 1 501 501 GDP GDP . L 6 TA1 D 1 502 502 TA1 TA1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 3 110.59 98.964 121.594 1 18.6 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . E 3 110.32 97.859 122.597 1 19.38 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . E 3 111.998 98.791 121.104 1 19.63 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . E 3 110.485 100.269 122.313 1 20.16 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . E 3 109.507 99.017 120.464 1 17.32 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . E 3 109.49 97.962 119.278 1 19.08 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . E 3 110.414 98.419 118.168 1 20.52 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . E 3 109.872 96.511 119.598 1 18.94 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . E 3 108.016 98.137 118.693 1 19.1 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . E 3 106.734 97.72 119.526 1 20.07 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . E 3 106.618 98.179 120.988 1 21.86 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . E 3 106.364 96.248 119.427 1 20.51 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . E 3 105.705 98.608 118.609 1 18.87 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . E 3 104.35 98.722 119.017 1 18.88 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . E 3 103.394 98.46 117.841 1 17.83 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . E 3 103.799 97.271 117.129 1 21.94 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . E 3 101.961 98.18 118.315 1 19.78 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . E 3 101.057 99.097 117.716 1 22.88 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . E 3 101.697 96.724 117.934 1 21.39 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . E 3 100.332 96.46 117.619 1 22.61 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . E 3 102.675 96.441 116.798 1 21.05 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . E 3 103.143 95.054 116.727 1 19.41 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . E 3 104.071 94.486 117.573 1 22.15 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . E 3 104.336 93.224 117.268 1 22.25 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . E 3 103.564 92.962 116.155 1 21.57 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . E 3 103.482 91.728 115.347 1 22.74 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . E 3 104.088 90.683 115.52 1 25.49 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . E 3 102.627 91.863 114.325 1 21.85 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . E 3 101.885 92.955 114.105 1 22.68 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . E 3 101.043 92.83 113.109 1 22.58 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . E 3 101.922 94.083 114.777 1 20.75 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . E 3 102.831 94.068 115.832 1 19.41 ? C4 GTP 501 A 1 HETATM 33 H H5' GTP . . . E 3 104.163 99.73 119.407 1 22.66 ? H5' GTP 501 A 1 HETATM 34 H "H5''" GTP . . . E 3 104.126 98.009 119.82 1 22.66 ? "H5''" GTP 501 A 1 HETATM 35 H H4' GTP . . . E 3 103.406 99.325 117.167 1 21.41 ? H4' GTP 501 A 1 HETATM 36 H H3' GTP . . . E 3 101.91 98.254 119.409 1 23.75 ? H3' GTP 501 A 1 HETATM 37 H HO3' GTP . . . E 3 100.974 99.82 118.361 1 27.47 ? HO3' GTP 501 A 1 HETATM 38 H H2' GTP . . . E 3 101.993 96.107 118.793 1 25.68 ? H2' GTP 501 A 1 HETATM 39 H HO2' GTP . . . E 3 100.13 96.982 116.824 1 27.15 ? HO2' GTP 501 A 1 HETATM 40 H H1' GTP . . . E 3 102.245 96.729 115.833 1 25.28 ? H1' GTP 501 A 1 HETATM 41 H H8 GTP . . . E 3 104.502 95.041 118.396 1 26.59 ? H8 GTP 501 A 1 HETATM 42 H HN1 GTP . . . E 3 102.524 91.083 113.686 1 26.23 ? HN1 GTP 501 A 1 HETATM 43 H HN21 GTP . . . E 3 101.279 92.086 112.465 1 27.11 ? HN21 GTP 501 A 1 HETATM 44 H HN22 GTP . . . E 3 100.748 93.715 112.716 1 27.11 ? HN22 GTP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #