data_6WVR
#
_model_server_result.job_id            SZFAF41zsoWGJvP3GHbyJQ 
_model_server_result.datetime_utc      '2024-11-14 17:58:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wvr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    6WVR 
#
_exptl.entry_id    6WVR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WVR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WVR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O1G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc2 E O2G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc3 E O3B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc4 E O2B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc5 I O1G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc6 I O2G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc7 I O3B GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc8 I O2B GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     6WVR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GTP A 1 501 503 GTP GTP . 
F 4 MG A 1 502 504 MG MG . 
G 5 GDP B 1 501 501 GDP GDP . 
H 6 TA1 B 1 502 502 TA1 TA1 . 
I 3 GTP C 1 501 503 GTP GTP . 
J 4 MG C 1 502 504 MG MG . 
K 5 GDP D 1 501 501 GDP GDP . 
L 6 TA1 D 1 502 502 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . I 3 110.821 98.846 38.288 1 18.6 ? PG GTP 501 C 1 
HETATM 2 O O1G GTP . . . I 3 110.548 97.742 39.292 1 19.38 ? O1G GTP 501 C 1 
HETATM 3 O O2G GTP . . . I 3 112.228 98.669 37.798 1 19.63 ? O2G GTP 501 C 1 
HETATM 4 O O3G GTP . . . I 3 110.72 100.152 39.007 1 20.16 ? O3G GTP 501 C 1 
HETATM 5 O O3B GTP . . . I 3 109.738 98.902 37.158 1 17.32 ? O3B GTP 501 C 1 
HETATM 6 P PB GTP . . . I 3 109.718 97.846 35.973 1 19.08 ? PB GTP 501 C 1 
HETATM 7 O O1B GTP . . . I 3 110.643 98.3 34.863 1 20.52 ? O1B GTP 501 C 1 
HETATM 8 O O2B GTP . . . I 3 110.096 96.394 36.293 1 18.94 ? O2B GTP 501 C 1 
HETATM 9 O O3A GTP . . . I 3 108.245 98.025 35.388 1 19.1 ? O3A GTP 501 C 1 
HETATM 10 P PA GTP . . . I 3 106.961 97.612 36.221 1 20.07 ? PA GTP 501 C 1 
HETATM 11 O O1A GTP . . . I 3 106.847 98.072 37.683 1 21.86 ? O1A GTP 501 C 1 
HETATM 12 O O2A GTP . . . I 3 106.587 96.141 36.122 1 20.51 ? O2A GTP 501 C 1 
HETATM 13 O O5' GTP . . . I 3 105.935 98.502 35.304 1 18.87 ? O5' GTP 501 C 1 
HETATM 14 C C5' GTP . . . I 3 104.58 98.62 35.712 1 18.88 ? C5' GTP 501 C 1 
HETATM 15 C C4' GTP . . . I 3 103.623 98.361 34.536 1 17.83 ? C4' GTP 501 C 1 
HETATM 16 O O4' GTP . . . I 3 104.025 97.17 33.824 1 21.94 ? O4' GTP 501 C 1 
HETATM 17 C C3' GTP . . . I 3 102.19 98.085 35.01 1 19.78 ? C3' GTP 501 C 1 
HETATM 18 O O3' GTP . . . I 3 101.288 99.004 34.411 1 22.88 ? O3' GTP 501 C 1 
HETATM 19 C C2' GTP . . . I 3 101.922 96.629 34.629 1 21.39 ? C2' GTP 501 C 1 
HETATM 20 O O2' GTP . . . I 3 100.556 96.369 34.315 1 22.61 ? O2' GTP 501 C 1 
HETATM 21 C C1' GTP . . . I 3 102.899 96.343 33.493 1 21.05 ? C1' GTP 501 C 1 
HETATM 22 N N9 GTP . . . I 3 103.363 94.955 33.423 1 19.41 ? N9 GTP 501 C 1 
HETATM 23 C C8 GTP . . . I 3 104.29 94.385 34.269 1 22.15 ? C8 GTP 501 C 1 
HETATM 24 N N7 GTP . . . I 3 104.551 93.122 33.964 1 22.25 ? N7 GTP 501 C 1 
HETATM 25 C C5 GTP . . . I 3 103.778 92.862 32.852 1 21.57 ? C5 GTP 501 C 1 
HETATM 26 C C6 GTP . . . I 3 103.693 91.628 32.044 1 22.74 ? C6 GTP 501 C 1 
HETATM 27 O O6 GTP . . . I 3 104.296 90.581 32.217 1 25.49 ? O6 GTP 501 C 1 
HETATM 28 N N1 GTP . . . I 3 102.838 91.765 31.022 1 21.85 ? N1 GTP 501 C 1 
HETATM 29 C C2 GTP . . . I 3 102.099 92.859 30.802 1 22.68 ? C2 GTP 501 C 1 
HETATM 30 N N2 GTP . . . I 3 101.257 92.736 29.806 1 22.58 ? N2 GTP 501 C 1 
HETATM 31 N N3 GTP . . . I 3 102.139 93.987 31.473 1 20.75 ? N3 GTP 501 C 1 
HETATM 32 C C4 GTP . . . I 3 103.048 93.969 32.528 1 19.41 ? C4 GTP 501 C 1 
HETATM 33 H H5' GTP . . . I 3 104.396 99.629 36.101 1 22.66 ? H5' GTP 501 C 1 
HETATM 34 H "H5''" GTP . . . I 3 104.354 97.908 36.515 1 22.66 ? "H5''" GTP 501 C 1 
HETATM 35 H H4' GTP . . . I 3 103.638 99.225 33.862 1 21.41 ? H4' GTP 501 C 1 
HETATM 36 H H3' GTP . . . I 3 102.139 98.159 36.104 1 23.75 ? H3' GTP 501 C 1 
HETATM 37 H HO3' GTP . . . I 3 101.207 99.727 35.055 1 27.47 ? HO3' GTP 501 C 1 
HETATM 38 H H2' GTP . . . I 3 102.216 96.012 35.489 1 25.68 ? H2' GTP 501 C 1 
HETATM 39 H HO2' GTP . . . I 3 100.355 96.891 33.519 1 27.15 ? HO2' GTP 501 C 1 
HETATM 40 H H1' GTP . . . I 3 102.47 96.632 32.528 1 25.28 ? H1' GTP 501 C 1 
HETATM 41 H H8 GTP . . . I 3 104.722 94.939 35.092 1 26.59 ? H8 GTP 501 C 1 
HETATM 42 H HN1 GTP . . . I 3 102.733 90.985 30.383 1 26.23 ? HN1 GTP 501 C 1 
HETATM 43 H HN21 GTP . . . I 3 101.491 91.991 29.162 1 27.11 ? HN21 GTP 501 C 1 
HETATM 44 H HN22 GTP . . . I 3 100.964 93.621 29.412 1 27.11 ? HN22 GTP 501 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#