data_6WVX # _model_server_result.job_id drlnLmaMSax-_g9mb0d91g _model_server_result.datetime_utc '2024-10-19 03:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6WVX # _exptl.entry_id 6WVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.89 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6'-(4-chlorophenyl)-1'-methyl-8'-(1-methyl-1H-pyrazol-4-yl)spiro[cyclopropane-1,4'-[1,2,4]triazolo[4,3-a][1,4]benzodiazepine]" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.21 _cell.angle_beta 75.25 _cell.angle_gamma 89.86 _cell.entry_id 6WVX _cell.length_a 30.43 _cell.length_b 39.71 _cell.length_c 57.82 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H19 Cl N6' _chem_comp.formula_weight 414.89 _chem_comp.id UDV _chem_comp.mon_nstd_flag . _chem_comp.name "6'-(4-chlorophenyl)-1'-methyl-8'-(1-methyl-1H-pyrazol-4-yl)spiro[cyclopropane-1,4'-[1,2,4]triazolo[4,3-a][1,4]benzodiazepine]" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C16 UDV sing 358 n n C16 C17 UDV doub 359 n y C16 C15 UDV sing 360 n y C17 C18 UDV sing 361 n y C15 C14 UDV doub 362 n y C18 C13 UDV doub 363 n y C14 C13 UDV sing 364 n y N4 C20 UDV doub 365 n y N4 N5 UDV sing 366 n y C20 C19 UDV sing 367 n y C13 C9 UDV sing 368 n n C21 N5 UDV sing 369 n n N5 C22 UDV sing 370 n y C19 C22 UDV doub 371 n y C19 C6 UDV sing 372 n n C7 C6 UDV doub 373 n y C7 C8 UDV sing 374 n y C9 N3 UDV doub 375 n n C9 C8 UDV sing 376 n n C6 C5 UDV sing 377 n y N3 C10 UDV sing 378 n n C8 C3 UDV doub 379 n y C5 C4 UDV doub 380 n y C3 C4 UDV sing 381 n y C3 N2 UDV sing 382 n n C10 C11 UDV sing 383 n n C10 C12 UDV sing 384 n n C10 C2 UDV sing 385 n n C11 C12 UDV sing 386 n n N2 C2 UDV sing 387 n y N2 C1 UDV sing 388 n y C2 N1 UDV doub 389 n y C1 C UDV sing 390 n n C1 N UDV doub 391 n y N1 N UDV sing 392 n y C7 H1 UDV sing 393 n n C11 H2 UDV sing 394 n n C11 H3 UDV sing 395 n n C12 H4 UDV sing 396 n n C12 H5 UDV sing 397 n n C14 H6 UDV sing 398 n n C15 H7 UDV sing 399 n n C20 H8 UDV sing 400 n n C21 H9 UDV sing 401 n n C21 H10 UDV sing 402 n n C21 H11 UDV sing 403 n n C22 H12 UDV sing 404 n n C17 H13 UDV sing 405 n n C18 H14 UDV sing 406 n n C H15 UDV sing 407 n n C H16 UDV sing 408 n n C H17 UDV sing 409 n n C5 H18 UDV sing 410 n n C4 H19 UDV sing 411 n n # _atom_sites.entry_id 6WVX _atom_sites.fract_transf_matrix[1][1] 0.032862 _atom_sites.fract_transf_matrix[1][2] -0.00008 _atom_sites.fract_transf_matrix[1][3] -0.008726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025183 _atom_sites.fract_transf_matrix[2][3] -0.003548 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UDV A 1 201 201 UDV INH . D 2 UDV B 1 201 201 UDV INH . E 3 HOH A 1 301 203 HOH HOH . E 3 HOH A 2 302 213 HOH HOH . E 3 HOH A 3 303 177 HOH HOH . E 3 HOH A 4 304 133 HOH HOH . E 3 HOH A 5 305 87 HOH HOH . E 3 HOH A 6 306 164 HOH HOH . E 3 HOH A 7 307 50 HOH HOH . E 3 HOH A 8 308 206 HOH HOH . E 3 HOH A 9 309 208 HOH HOH . E 3 HOH A 10 310 199 HOH HOH . E 3 HOH A 11 311 10 HOH HOH . E 3 HOH A 12 312 145 HOH HOH . E 3 HOH A 13 313 44 HOH HOH . E 3 HOH A 14 314 156 HOH HOH . E 3 HOH A 15 315 86 HOH HOH . E 3 HOH A 16 316 127 HOH HOH . E 3 HOH A 17 317 161 HOH HOH . E 3 HOH A 18 318 117 HOH HOH . E 3 HOH A 19 319 140 HOH HOH . E 3 HOH A 20 320 118 HOH HOH . E 3 HOH A 21 321 180 HOH HOH . E 3 HOH A 22 322 59 HOH HOH . E 3 HOH A 23 323 70 HOH HOH . E 3 HOH A 24 324 115 HOH HOH . E 3 HOH A 25 325 202 HOH HOH . E 3 HOH A 26 326 169 HOH HOH . E 3 HOH A 27 327 64 HOH HOH . E 3 HOH A 28 328 105 HOH HOH . E 3 HOH A 29 329 11 HOH HOH . E 3 HOH A 30 330 62 HOH HOH . E 3 HOH A 31 331 42 HOH HOH . E 3 HOH A 32 332 95 HOH HOH . E 3 HOH A 33 333 27 HOH HOH . E 3 HOH A 34 334 65 HOH HOH . E 3 HOH A 35 335 162 HOH HOH . E 3 HOH A 36 336 3 HOH HOH . E 3 HOH A 37 337 13 HOH HOH . E 3 HOH A 38 338 67 HOH HOH . E 3 HOH A 39 339 142 HOH HOH . E 3 HOH A 40 340 84 HOH HOH . E 3 HOH A 41 341 24 HOH HOH . E 3 HOH A 42 342 214 HOH HOH . E 3 HOH A 43 343 23 HOH HOH . E 3 HOH A 44 344 163 HOH HOH . E 3 HOH A 45 345 39 HOH HOH . E 3 HOH A 46 346 56 HOH HOH . E 3 HOH A 47 347 205 HOH HOH . E 3 HOH A 48 348 108 HOH HOH . E 3 HOH A 49 349 71 HOH HOH . E 3 HOH A 50 350 17 HOH HOH . E 3 HOH A 51 351 128 HOH HOH . E 3 HOH A 52 352 82 HOH HOH . E 3 HOH A 53 353 92 HOH HOH . E 3 HOH A 54 354 79 HOH HOH . E 3 HOH A 55 355 122 HOH HOH . E 3 HOH A 56 356 150 HOH HOH . E 3 HOH A 57 357 48 HOH HOH . E 3 HOH A 58 358 6 HOH HOH . E 3 HOH A 59 359 91 HOH HOH . E 3 HOH A 60 360 201 HOH HOH . E 3 HOH A 61 361 4 HOH HOH . E 3 HOH A 62 362 5 HOH HOH . E 3 HOH A 63 363 28 HOH HOH . E 3 HOH A 64 364 99 HOH HOH . E 3 HOH A 65 365 131 HOH HOH . E 3 HOH A 66 366 113 HOH HOH . E 3 HOH A 67 367 138 HOH HOH . E 3 HOH A 68 368 125 HOH HOH . E 3 HOH A 69 369 72 HOH HOH . E 3 HOH A 70 370 218 HOH HOH . E 3 HOH A 71 371 176 HOH HOH . E 3 HOH A 72 372 29 HOH HOH . E 3 HOH A 73 373 81 HOH HOH . E 3 HOH A 74 374 34 HOH HOH . E 3 HOH A 75 375 151 HOH HOH . E 3 HOH A 76 376 144 HOH HOH . E 3 HOH A 77 377 21 HOH HOH . E 3 HOH A 78 378 135 HOH HOH . E 3 HOH A 79 379 111 HOH HOH . E 3 HOH A 80 380 157 HOH HOH . E 3 HOH A 81 381 2 HOH HOH . E 3 HOH A 82 382 53 HOH HOH . E 3 HOH A 83 383 93 HOH HOH . E 3 HOH A 84 384 15 HOH HOH . E 3 HOH A 85 385 121 HOH HOH . E 3 HOH A 86 386 178 HOH HOH . E 3 HOH A 87 387 83 HOH HOH . E 3 HOH A 88 388 195 HOH HOH . E 3 HOH A 89 389 232 HOH HOH . E 3 HOH A 90 390 149 HOH HOH . E 3 HOH A 91 391 141 HOH HOH . E 3 HOH A 92 392 217 HOH HOH . E 3 HOH A 93 393 197 HOH HOH . E 3 HOH A 94 394 129 HOH HOH . E 3 HOH A 95 395 174 HOH HOH . E 3 HOH A 96 396 179 HOH HOH . E 3 HOH A 97 397 207 HOH HOH . E 3 HOH A 98 398 69 HOH HOH . E 3 HOH A 99 399 37 HOH HOH . E 3 HOH A 100 400 230 HOH HOH . E 3 HOH A 101 401 204 HOH HOH . E 3 HOH A 102 402 58 HOH HOH . E 3 HOH A 103 403 215 HOH HOH . E 3 HOH A 104 404 123 HOH HOH . E 3 HOH A 105 405 73 HOH HOH . E 3 HOH A 106 406 186 HOH HOH . E 3 HOH A 107 407 196 HOH HOH . E 3 HOH A 108 408 194 HOH HOH . E 3 HOH A 109 409 200 HOH HOH . E 3 HOH A 110 410 216 HOH HOH . E 3 HOH A 111 411 126 HOH HOH . E 3 HOH A 112 412 231 HOH HOH . F 3 HOH B 1 301 191 HOH HOH . F 3 HOH B 2 302 80 HOH HOH . F 3 HOH B 3 303 228 HOH HOH . F 3 HOH B 4 304 36 HOH HOH . F 3 HOH B 5 305 167 HOH HOH . F 3 HOH B 6 306 159 HOH HOH . F 3 HOH B 7 307 226 HOH HOH . F 3 HOH B 8 308 155 HOH HOH . F 3 HOH B 9 309 52 HOH HOH . F 3 HOH B 10 310 116 HOH HOH . F 3 HOH B 11 311 8 HOH HOH . F 3 HOH B 12 312 63 HOH HOH . F 3 HOH B 13 313 183 HOH HOH . F 3 HOH B 14 314 18 HOH HOH . F 3 HOH B 15 315 16 HOH HOH . F 3 HOH B 16 316 19 HOH HOH . F 3 HOH B 17 317 143 HOH HOH . F 3 HOH B 18 318 112 HOH HOH . F 3 HOH B 19 319 107 HOH HOH . F 3 HOH B 20 320 76 HOH HOH . F 3 HOH B 21 321 33 HOH HOH . F 3 HOH B 22 322 181 HOH HOH . F 3 HOH B 23 323 77 HOH HOH . F 3 HOH B 24 324 114 HOH HOH . F 3 HOH B 25 325 165 HOH HOH . F 3 HOH B 26 326 9 HOH HOH . F 3 HOH B 27 327 57 HOH HOH . F 3 HOH B 28 328 136 HOH HOH . F 3 HOH B 29 329 25 HOH HOH . F 3 HOH B 30 330 106 HOH HOH . F 3 HOH B 31 331 98 HOH HOH . F 3 HOH B 32 332 43 HOH HOH . F 3 HOH B 33 333 45 HOH HOH . F 3 HOH B 34 334 78 HOH HOH . F 3 HOH B 35 335 120 HOH HOH . F 3 HOH B 36 336 119 HOH HOH . F 3 HOH B 37 337 168 HOH HOH . F 3 HOH B 38 338 14 HOH HOH . F 3 HOH B 39 339 66 HOH HOH . F 3 HOH B 40 340 100 HOH HOH . F 3 HOH B 41 341 85 HOH HOH . F 3 HOH B 42 342 68 HOH HOH . F 3 HOH B 43 343 97 HOH HOH . F 3 HOH B 44 344 49 HOH HOH . F 3 HOH B 45 345 22 HOH HOH . F 3 HOH B 46 346 153 HOH HOH . F 3 HOH B 47 347 61 HOH HOH . F 3 HOH B 48 348 96 HOH HOH . F 3 HOH B 49 349 7 HOH HOH . F 3 HOH B 50 350 90 HOH HOH . F 3 HOH B 51 351 101 HOH HOH . F 3 HOH B 52 352 182 HOH HOH . F 3 HOH B 53 353 35 HOH HOH . F 3 HOH B 54 354 94 HOH HOH . F 3 HOH B 55 355 130 HOH HOH . F 3 HOH B 56 356 88 HOH HOH . F 3 HOH B 57 357 132 HOH HOH . F 3 HOH B 58 358 20 HOH HOH . F 3 HOH B 59 359 210 HOH HOH . F 3 HOH B 60 360 173 HOH HOH . F 3 HOH B 61 361 109 HOH HOH . F 3 HOH B 62 362 47 HOH HOH . F 3 HOH B 63 363 32 HOH HOH . F 3 HOH B 64 364 160 HOH HOH . F 3 HOH B 65 365 158 HOH HOH . F 3 HOH B 66 366 193 HOH HOH . F 3 HOH B 67 367 110 HOH HOH . F 3 HOH B 68 368 41 HOH HOH . F 3 HOH B 69 369 89 HOH HOH . F 3 HOH B 70 370 154 HOH HOH . F 3 HOH B 71 371 152 HOH HOH . F 3 HOH B 72 372 12 HOH HOH . F 3 HOH B 73 373 55 HOH HOH . F 3 HOH B 74 374 51 HOH HOH . F 3 HOH B 75 375 1 HOH HOH . F 3 HOH B 76 376 146 HOH HOH . F 3 HOH B 77 377 30 HOH HOH . F 3 HOH B 78 378 26 HOH HOH . F 3 HOH B 79 379 134 HOH HOH . F 3 HOH B 80 380 137 HOH HOH . F 3 HOH B 81 381 102 HOH HOH . F 3 HOH B 82 382 223 HOH HOH . F 3 HOH B 83 383 166 HOH HOH . F 3 HOH B 84 384 40 HOH HOH . F 3 HOH B 85 385 198 HOH HOH . F 3 HOH B 86 386 31 HOH HOH . F 3 HOH B 87 387 184 HOH HOH . F 3 HOH B 88 388 211 HOH HOH . F 3 HOH B 89 389 212 HOH HOH . F 3 HOH B 90 390 104 HOH HOH . F 3 HOH B 91 391 192 HOH HOH . F 3 HOH B 92 392 60 HOH HOH . F 3 HOH B 93 393 185 HOH HOH . F 3 HOH B 94 394 124 HOH HOH . F 3 HOH B 95 395 190 HOH HOH . F 3 HOH B 96 396 227 HOH HOH . F 3 HOH B 97 397 74 HOH HOH . F 3 HOH B 98 398 139 HOH HOH . F 3 HOH B 99 399 171 HOH HOH . F 3 HOH B 100 400 175 HOH HOH . F 3 HOH B 101 401 170 HOH HOH . F 3 HOH B 102 402 222 HOH HOH . F 3 HOH B 103 403 46 HOH HOH . F 3 HOH B 104 404 75 HOH HOH . F 3 HOH B 105 405 38 HOH HOH . F 3 HOH B 106 406 103 HOH HOH . F 3 HOH B 107 407 219 HOH HOH . F 3 HOH B 108 408 220 HOH HOH . F 3 HOH B 109 409 172 HOH HOH . F 3 HOH B 110 410 54 HOH HOH . F 3 HOH B 111 411 189 HOH HOH . F 3 HOH B 112 412 225 HOH HOH . F 3 HOH B 113 413 187 HOH HOH . F 3 HOH B 114 414 147 HOH HOH . F 3 HOH B 115 415 224 HOH HOH . F 3 HOH B 116 416 148 HOH HOH . F 3 HOH B 117 417 188 HOH HOH . F 3 HOH B 118 418 229 HOH HOH . F 3 HOH B 119 419 209 HOH HOH . F 3 HOH B 120 420 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UDV . . . D 2 -26.127 19.492 12.775 1 7.23 ? C1 UDV 201 B 1 HETATM 2 C C2 UDV . . . D 2 -27.721 18.229 13.602 1 7.37 ? C2 UDV 201 B 1 HETATM 3 C C3 UDV . . . D 2 -25.453 17.759 14.523 1 7.72 ? C3 UDV 201 B 1 HETATM 4 C C7 UDV . . . D 2 -24.896 16.62 16.571 1 8.3 ? C7 UDV 201 B 1 HETATM 5 C C8 UDV . . . D 2 -25.811 17.359 15.823 1 7.8 ? C8 UDV 201 B 1 HETATM 6 C C9 UDV . . . D 2 -27.116 17.694 16.445 1 7.74 ? C9 UDV 201 B 1 HETATM 7 C C10 UDV . . . D 2 -28.334 17.252 14.433 1 7.51 ? C10 UDV 201 B 1 HETATM 8 C C11 UDV . . . D 2 -28.199 15.768 14.234 1 7.7 ? C11 UDV 201 B 1 HETATM 9 C C12 UDV . . . D 2 -29.529 16.432 14.023 1 7.72 ? C12 UDV 201 B 1 HETATM 10 C C13 UDV . . . D 2 -27.082 18.443 17.722 1 7.3 ? C13 UDV 201 B 1 HETATM 11 C C14 UDV . . . D 2 -28.214 18.49 18.525 1 7.27 ? C14 UDV 201 B 1 HETATM 12 C C15 UDV . . . D 2 -28.206 19.182 19.711 1 7.34 ? C15 UDV 201 B 1 HETATM 13 C C16 UDV . . . D 2 -27.072 19.844 20.093 1 7.42 ? C16 UDV 201 B 1 HETATM 14 C C19 UDV . . . D 2 -22.716 15.509 16.884 1 10.33 ? C19 UDV 201 B 1 HETATM 15 C C20 UDV . . . D 2 -21.321 15.378 16.661 1 11.48 ? C20 UDV 201 B 1 HETATM 16 C C21 UDV . . . D 2 -21.461 13.536 19.625 1 12.23 ? C21 UDV 201 B 1 HETATM 17 C C22 UDV . . . D 2 -22.936 14.827 18.06 1 11.69 ? C22 UDV 201 B 1 HETATM 18 CL CL UDV . . . D 2 -27.08 20.72 21.599 1 9.08 ? CL UDV 201 B 1 HETATM 19 C C17 UDV . . . D 2 -25.931 19.819 19.323 1 7.25 ? C17 UDV 201 B 1 HETATM 20 C C18 UDV . . . D 2 -25.941 19.118 18.136 1 7.21 ? C18 UDV 201 B 1 HETATM 21 N N3 UDV . . . D 2 -28.223 17.773 15.799 1 7.97 ? N3 UDV 201 B 1 HETATM 22 N N1 UDV . . . D 2 -28.267 19.033 12.724 1 7.17 ? N1 UDV 201 B 1 HETATM 23 N N UDV . . . D 2 -27.254 19.828 12.205 1 7.32 ? N UDV 201 B 1 HETATM 24 N N2 UDV . . . D 2 -26.359 18.492 13.687 1 7.45 ? N2 UDV 201 B 1 HETATM 25 C C UDV . . . D 2 -24.806 20.108 12.491 1 7.29 ? C UDV 201 B 1 HETATM 26 C C6 UDV . . . D 2 -23.657 16.27 16.044 1 9.09 ? C6 UDV 201 B 1 HETATM 27 C C5 UDV . . . D 2 -23.32 16.66 14.76 1 8.45 ? C5 UDV 201 B 1 HETATM 28 C C4 UDV . . . D 2 -24.21 17.39 13.991 1 8.09 ? C4 UDV 201 B 1 HETATM 29 N N5 UDV . . . D 2 -21.753 14.341 18.45 1 12.03 ? N5 UDV 201 B 1 HETATM 30 N N4 UDV . . . D 2 -20.727 14.665 17.608 1 12.42 ? N4 UDV 201 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #