data_6WWN # _model_server_result.job_id D7jhMnoACrV2eQ6WpHY-6w _model_server_result.datetime_utc '2024-11-17 15:52:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6WWN # _exptl.entry_id 6WWN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 98 A ASP 98 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc2 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc3 D O2G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 C OG SER 104 K SER 489 1_555 J MG MG . K MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc5 C OG SER 218 K SER 603 1_555 J MG MG . K MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc6 I O1B ADP . K ADP 801 1_555 J MG MG . K MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 I O2B ADP . K ADP 801 1_555 J MG MG . K MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 221 n n PG O2G GTP sing 222 n n PG O3G GTP sing 223 n n PG O3B GTP sing 224 n n O2G HOG2 GTP sing 225 n n O3G HOG3 GTP sing 226 n n O3B PB GTP sing 227 n n PB O1B GTP doub 228 n n PB O2B GTP sing 229 n n PB O3A GTP sing 230 n n O2B HOB2 GTP sing 231 n n O3A PA GTP sing 232 n n PA O1A GTP doub 233 n n PA O2A GTP sing 234 n n PA O5' GTP sing 235 n n O2A HOA2 GTP sing 236 n n O5' C5' GTP sing 237 n n C5' C4' GTP sing 238 n n C5' H5' GTP sing 239 n n C5' "H5''" GTP sing 240 n n C4' O4' GTP sing 241 n n C4' C3' GTP sing 242 n n C4' H4' GTP sing 243 n n O4' C1' GTP sing 244 n n C3' O3' GTP sing 245 n n C3' C2' GTP sing 246 n n C3' H3' GTP sing 247 n n O3' HO3' GTP sing 248 n n C2' O2' GTP sing 249 n n C2' C1' GTP sing 250 n n C2' H2' GTP sing 251 n n O2' HO2' GTP sing 252 n n C1' N9 GTP sing 253 n n C1' H1' GTP sing 254 n n N9 C8 GTP sing 255 n y N9 C4 GTP sing 256 n y C8 N7 GTP doub 257 n y C8 H8 GTP sing 258 n n N7 C5 GTP sing 259 n y C5 C6 GTP sing 260 n n C5 C4 GTP doub 261 n y C6 O6 GTP doub 262 n n C6 N1 GTP sing 263 n n N1 C2 GTP sing 264 n n N1 HN1 GTP sing 265 n n C2 N2 GTP sing 266 n n C2 N3 GTP doub 267 n n N2 HN21 GTP sing 268 n n N2 HN22 GTP sing 269 n n N3 C4 GTP sing 270 n n # _atom_sites.entry_id 6WWN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 501 GDP GDP . G 7 TA1 B 1 502 502 TA1 TA1 . H 8 AF3 K 1 800 800 AF3 AF3 . I 9 ADP K 1 801 801 ADP ADP . J 5 MG K 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 175.84 176.747 165.871 1 52.29 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . D 4 177.279 176.422 166.179 1 52.29 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . D 4 175.494 178.111 166.401 1 52.29 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . D 4 174.93 175.717 166.486 1 52.29 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . D 4 175.649 176.74 164.281 1 52.29 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . D 4 176.84 176.19 163.36 1 52.29 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . D 4 178.101 176.972 163.636 1 52.29 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . D 4 176.453 176.258 161.905 1 52.29 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . D 4 177.032 174.664 163.805 1 52.29 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . D 4 177.63 173.646 162.72 1 52.29 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . D 4 178.409 174.413 161.68 1 52.29 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . D 4 176.547 172.81 162.086 1 52.29 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . D 4 178.645 172.732 163.561 1 52.29 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . D 4 178.409 171.349 163.652 1 52.29 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . D 4 178.836 170.716 162.336 1 52.29 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . D 4 179.659 171.614 161.631 1 52.29 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . D 4 179.66 169.466 162.556 1 52.29 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . D 4 178.956 168.309 162.174 1 52.29 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . D 4 180.913 169.64 161.724 1 52.29 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . D 4 181.132 168.523 160.89 1 52.29 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . D 4 180.684 170.925 160.948 1 52.29 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . D 4 181.879 171.778 160.917 1 52.29 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . D 4 182.29 172.615 161.911 1 52.29 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . D 4 183.413 173.242 161.502 1 52.29 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . D 4 183.714 172.825 160.258 1 52.29 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . D 4 184.74 173.148 159.389 1 52.29 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . D 4 185.596 173.959 159.728 1 52.29 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . D 4 184.802 172.551 158.153 1 52.29 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . D 4 183.839 171.638 157.787 1 52.29 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . D 4 183.891 171.061 156.591 1 52.29 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . D 4 182.817 171.324 158.655 1 52.29 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . D 4 182.755 171.907 159.874 1 52.29 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #