data_6WXB
#
_model_server_result.job_id            r4_qf9UX5Tn9MUUaZAGsGg 
_model_server_result.datetime_utc      '2025-07-19 18:15:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wxb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":605}' 
#
_entry.id    6WXB 
#
_exptl.entry_id    6WXB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-mannopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WXB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WXB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 466 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 B SG CYS 14 B CYS 14 1_555 B SG CYS 466 B CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 64 B CYS 64 1_555 B SG CYS 76 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 B SG CYS 97 B CYS 97 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 B SG CYS 281 B CYS 281 1_555 B SG CYS 305 B CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf9 C SG CYS 14 C CYS 14 1_555 C SG CYS 466 C CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf10 C SG CYS 64 C CYS 64 1_555 C SG CYS 76 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf11 C SG CYS 97 C CYS 97 1_555 C SG CYS 139 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 C SG CYS 281 C CYS 281 1_555 C SG CYS 305 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A ND2 ASN 81 A ASN 81 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale3 A ND2 ASN 285 A ASN 285 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 B ND2 ASN 81 B ASN 81 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale5 B ND2 ASN 165 B ASN 165 1_555 J C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale6 B ND2 ASN 285 B ASN 285 1_555 I C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale7 C ND2 ASN 81 C ASN 81 1_555 R C1 NAG . C NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale8 C ND2 ASN 165 C ASN 165 1_555 Q C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale9 C ND2 ASN 285 C ASN 285 1_555 P C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BMA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-mannopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BMA sing 70 n n 
C1 O1 BMA sing 71 n n 
C1 O5 BMA sing 72 n n 
C1 H1 BMA sing 73 n n 
C2 C3 BMA sing 74 n n 
C2 O2 BMA sing 75 n n 
C2 H2 BMA sing 76 n n 
C3 C4 BMA sing 77 n n 
C3 O3 BMA sing 78 n n 
C3 H3 BMA sing 79 n n 
C4 C5 BMA sing 80 n n 
C4 O4 BMA sing 81 n n 
C4 H4 BMA sing 82 n n 
C5 C6 BMA sing 83 n n 
C5 O5 BMA sing 84 n n 
C5 H5 BMA sing 85 n n 
C6 O6 BMA sing 86 n n 
C6 H61 BMA sing 87 n n 
C6 H62 BMA sing 88 n n 
O1 HO1 BMA sing 89 n n 
O2 HO2 BMA sing 90 n n 
O3 HO3 BMA sing 91 n n 
O4 HO4 BMA sing 92 n n 
O6 HO6 BMA sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BMA b-D-mannopyranose 'COMMON NAME' GMML 1 
BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6WXB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 601 601 NAG NAG . 
E 2 NAG A 1 602 609 NAG NAG . 
F 2 NAG A 1 603 701 NAG NAG . 
G 2 NAG A 1 604 610 NAG NAG . 
H 3 BMA A 1 605 611 BMA BMA . 
I 2 NAG B 1 601 601 NAG NAG . 
J 2 NAG B 1 602 609 NAG NAG . 
K 2 NAG B 1 603 701 NAG NAG . 
L 2 NAG B 1 604 610 NAG NAG . 
M 3 BMA B 1 605 611 BMA BMA . 
N 2 NAG C 1 601 610 NAG NAG . 
O 3 BMA C 1 602 611 BMA BMA . 
P 2 NAG C 1 603 601 NAG NAG . 
Q 2 NAG C 1 604 609 NAG NAG . 
R 2 NAG C 1 605 701 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMA . . . M 3 161.607 127.718 92.75 1 73.44 ? C1 BMA 605 B 1 
HETATM 2 C C2 BMA . . . M 3 162.334 127.267 91.502 1 73.44 ? C2 BMA 605 B 1 
HETATM 3 C C3 BMA . . . M 3 163.213 126.094 91.865 1 73.44 ? C3 BMA 605 B 1 
HETATM 4 C C4 BMA . . . M 3 164.054 126.431 93.113 1 73.44 ? C4 BMA 605 B 1 
HETATM 5 C C5 BMA . . . M 3 163.151 126.909 94.286 1 73.44 ? C5 BMA 605 B 1 
HETATM 6 C C6 BMA . . . M 3 163.908 127.441 95.469 1 73.44 ? C6 BMA 605 B 1 
HETATM 7 O O2 BMA . . . M 3 163.173 128.321 90.994 1 73.44 ? O2 BMA 605 B 1 
HETATM 8 O O3 BMA . . . M 3 164.063 125.708 90.78 1 73.44 ? O3 BMA 605 B 1 
HETATM 9 O O4 BMA . . . M 3 164.812 125.307 93.512 1 73.44 ? O4 BMA 605 B 1 
HETATM 10 O O5 BMA . . . M 3 162.41 127.995 93.836 1 73.44 ? O5 BMA 605 B 1 
HETATM 11 O O6 BMA . . . M 3 162.964 127.977 96.398 1 73.44 ? O6 BMA 605 B 1 
HETATM 12 H H1 BMA . . . M 3 160.766 127.064 93.011 1 73.44 ? H1 BMA 605 B 1 
HETATM 13 H H2 BMA . . . M 3 161.591 126.965 90.77 1 73.44 ? H2 BMA 605 B 1 
HETATM 14 H H3 BMA . . . M 3 162.583 125.222 92.096 1 73.44 ? H3 BMA 605 B 1 
HETATM 15 H H4 BMA . . . M 3 164.715 127.258 92.853 1 73.44 ? H4 BMA 605 B 1 
HETATM 16 H H5 BMA . . . M 3 162.495 126.086 94.63 1 73.44 ? H5 BMA 605 B 1 
HETATM 17 H H61 BMA . . . M 3 164.582 128.21 95.097 1 73.44 ? H61 BMA 605 B 1 
HETATM 18 H H62 BMA . . . M 3 164.469 126.618 95.897 1 73.44 ? H62 BMA 605 B 1 
HETATM 19 H HO2 BMA . . . M 3 162.742 128.636 90.203 1 73.44 ? HO2 BMA 605 B 1 
HETATM 20 H HO3 BMA . . . M 3 163.457 125.31 90.143 1 73.44 ? HO3 BMA 605 B 1 
HETATM 21 H HO4 BMA . . . M 3 165.71 125.471 93.151 1 73.44 ? HO4 BMA 605 B 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#