data_6WXJ # _model_server_result.job_id o41tFhI10Pa5eNvNfppInQ _model_server_result.datetime_utc '2025-07-31 05:34:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6WXJ # _exptl.entry_id 6WXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-{[(2S)-2-(6-methoxypyridin-3-yl)-2,3-dihydro-1,4-benzodioxin-6-yl]methyl}-3H-imidazo[4,5-b]pyridin-6-yl)-2-methylbut-3-yn-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WXJ _cell.length_a 80.52 _cell.length_b 80.52 _cell.length_c 144.06 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H25 N5 O3' _chem_comp.formula_weight 455.508 _chem_comp.id UF4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-{[(2S)-2-(6-methoxypyridin-3-yl)-2,3-dihydro-1,4-benzodioxin-6-yl]methyl}-3H-imidazo[4,5-b]pyridin-6-yl)-2-methylbut-3-yn-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBD CBC UF4 sing 358 n n CBF CBC UF4 sing 359 n n CBC NBE UF4 sing 360 n n CBC CBB UF4 sing 361 n n CBB CAZ UF4 trip 362 n n CAZ CAW UF4 sing 363 n n CAV CAT UF4 doub 364 n y CAV CAW UF4 sing 365 n y NAS CAT UF4 sing 366 n y NAS CAR UF4 doub 367 n y CAT CAU UF4 sing 368 n y CAW CAX UF4 doub 369 n y CAR NAH UF4 sing 370 n y CAU NAH UF4 sing 371 n y CAU NAY UF4 doub 372 n y CAX NAY UF4 sing 373 n y NAH CAG UF4 sing 374 n n CAG CAA UF4 sing 375 n n CAA CAF UF4 doub 376 n y CAA CAB UF4 sing 377 n y CAF CAE UF4 sing 378 n y CAB CAC UF4 doub 379 n y CAE OBG UF4 sing 380 n n CAE CAD UF4 doub 381 n y CAC CAD UF4 sing 382 n y OBG CBH UF4 sing 383 n n CBH CAJ UF4 sing 384 n n CAD OAI UF4 sing 385 n n OAI CAJ UF4 sing 386 n n CAP CAK UF4 doub 387 n y CAP CAO UF4 sing 388 n y CAJ CAK UF4 sing 389 n n CAK CAL UF4 sing 390 n y CAO CAN UF4 doub 391 n y CAL NAM UF4 doub 392 n y CAN NAM UF4 sing 393 n y CAN OAQ UF4 sing 394 n n OAQ CBA UF4 sing 395 n n CBD H1 UF4 sing 396 n n CBD H2 UF4 sing 397 n n CBD H3 UF4 sing 398 n n CBF H4 UF4 sing 399 n n CBF H5 UF4 sing 400 n n CBF H6 UF4 sing 401 n n NBE H7 UF4 sing 402 n n NBE H8 UF4 sing 403 n n CAV H10 UF4 sing 404 n n CAX H11 UF4 sing 405 n n CAR H12 UF4 sing 406 n n CAG H13 UF4 sing 407 n n CAG H14 UF4 sing 408 n n CAF H15 UF4 sing 409 n n CAB H16 UF4 sing 410 n n CAC H17 UF4 sing 411 n n CBH H18 UF4 sing 412 n n CBH H19 UF4 sing 413 n n CAJ H20 UF4 sing 414 n n CAL H21 UF4 sing 415 n n CAP H22 UF4 sing 416 n n CAO H23 UF4 sing 417 n n CBA H24 UF4 sing 418 n n CBA H25 UF4 sing 419 n n CBA H26 UF4 sing 420 n n # _atom_sites.entry_id 6WXJ _atom_sites.fract_transf_matrix[1][1] 0.012419 _atom_sites.fract_transf_matrix[1][2] 0.00717 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UF4 A 1 1001 1001 UF4 DRG . C 3 HOH A 1 1101 25 HOH HOH . C 3 HOH A 2 1102 22 HOH HOH . C 3 HOH A 3 1103 8 HOH HOH . C 3 HOH A 4 1104 30 HOH HOH . C 3 HOH A 5 1105 29 HOH HOH . C 3 HOH A 6 1106 34 HOH HOH . C 3 HOH A 7 1107 5 HOH HOH . C 3 HOH A 8 1108 6 HOH HOH . C 3 HOH A 9 1109 32 HOH HOH . C 3 HOH A 10 1110 31 HOH HOH . C 3 HOH A 11 1111 36 HOH HOH . C 3 HOH A 12 1112 14 HOH HOH . C 3 HOH A 13 1113 20 HOH HOH . C 3 HOH A 14 1114 4 HOH HOH . C 3 HOH A 15 1115 10 HOH HOH . C 3 HOH A 16 1116 27 HOH HOH . C 3 HOH A 17 1117 35 HOH HOH . C 3 HOH A 18 1118 15 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 21 HOH HOH . C 3 HOH A 21 1121 23 HOH HOH . C 3 HOH A 22 1122 11 HOH HOH . C 3 HOH A 23 1123 39 HOH HOH . C 3 HOH A 24 1124 38 HOH HOH . C 3 HOH A 25 1125 33 HOH HOH . C 3 HOH A 26 1126 37 HOH HOH . C 3 HOH A 27 1127 3 HOH HOH . C 3 HOH A 28 1128 9 HOH HOH . C 3 HOH A 29 1129 7 HOH HOH . C 3 HOH A 30 1130 41 HOH HOH . C 3 HOH A 31 1131 12 HOH HOH . C 3 HOH A 32 1132 24 HOH HOH . C 3 HOH A 33 1133 16 HOH HOH . C 3 HOH A 34 1134 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBD UF4 . . . B 2 11.328 34.854 -11.062 1 103.86 ? CBD UF4 1001 A 1 HETATM 2 C CBC UF4 . . . B 2 10.497 34.586 -9.767 1 105.73 ? CBC UF4 1001 A 1 HETATM 3 C CBF UF4 . . . B 2 9.239 33.798 -10.144 1 106.46 ? CBF UF4 1001 A 1 HETATM 4 N NBE UF4 . . . B 2 10.131 35.842 -9.095 1 110.18 ? NBE UF4 1001 A 1 HETATM 5 C CBB UF4 . . . B 2 11.363 33.702 -8.808 1 102.45 ? CBB UF4 1001 A 1 HETATM 6 C CAZ UF4 . . . B 2 12.093 32.864 -8.071 1 90.52 ? CAZ UF4 1001 A 1 HETATM 7 C CAW UF4 . . . B 2 12.814 31.855 -7.423 1 87.14 ? CAW UF4 1001 A 1 HETATM 8 C CAV UF4 . . . B 2 12.818 30.602 -8.049 1 88.16 ? CAV UF4 1001 A 1 HETATM 9 C CAX UF4 . . . B 2 13.502 32.033 -6.228 1 82.59 ? CAX UF4 1001 A 1 HETATM 10 N NAY UF4 . . . B 2 14.167 30.906 -5.72 1 81.79 ? NAY UF4 1001 A 1 HETATM 11 C CAU UF4 . . . B 2 14.147 29.727 -6.385 1 83.93 ? CAU UF4 1001 A 1 HETATM 12 C CAT UF4 . . . B 2 13.477 29.568 -7.538 1 86.16 ? CAT UF4 1001 A 1 HETATM 13 N NAS UF4 . . . B 2 13.618 28.293 -7.964 1 87.56 ? NAS UF4 1001 A 1 HETATM 14 C CAR UF4 . . . B 2 14.381 27.658 -7.057 1 86.07 ? CAR UF4 1001 A 1 HETATM 15 N NAH UF4 . . . B 2 14.694 28.541 -6.084 1 85.92 ? NAH UF4 1001 A 1 HETATM 16 C CAG UF4 . . . B 2 15.519 28.543 -4.91 1 84.67 ? CAG UF4 1001 A 1 HETATM 17 C CAA UF4 . . . B 2 15.313 27.571 -3.928 1 84.1 ? CAA UF4 1001 A 1 HETATM 18 C CAF UF4 . . . B 2 16.372 26.762 -3.523 1 83.03 ? CAF UF4 1001 A 1 HETATM 19 C CAB UF4 . . . B 2 14.092 27.469 -3.257 1 86.18 ? CAB UF4 1001 A 1 HETATM 20 C CAC UF4 . . . B 2 13.883 26.541 -2.244 1 80.93 ? CAC UF4 1001 A 1 HETATM 21 C CAD UF4 . . . B 2 14.927 25.729 -1.879 1 78.69 ? CAD UF4 1001 A 1 HETATM 22 O OAI UF4 . . . B 2 14.703 24.829 -0.914 1 71.84 ? OAI UF4 1001 A 1 HETATM 23 C CAE UF4 . . . B 2 16.188 25.836 -2.505 1 82.4 ? CAE UF4 1001 A 1 HETATM 24 O OBG UF4 . . . B 2 17.22 25.011 -2.115 1 81.56 ? OBG UF4 1001 A 1 HETATM 25 C CBH UF4 . . . B 2 16.586 23.757 -1.882 1 77.3 ? CBH UF4 1001 A 1 HETATM 26 C CAJ UF4 . . . B 2 15.803 23.984 -0.635 1 73.44 ? CAJ UF4 1001 A 1 HETATM 27 C CAK UF4 . . . B 2 15.325 22.848 -0.01 1 68.95 ? CAK UF4 1001 A 1 HETATM 28 C CAL UF4 . . . B 2 15.497 22.8 1.361 1 67.42 ? CAL UF4 1001 A 1 HETATM 29 N NAM UF4 . . . B 2 15.073 21.774 2.095 1 67.62 ? NAM UF4 1001 A 1 HETATM 30 C CAP UF4 . . . B 2 14.69 21.846 -0.683 1 69.5 ? CAP UF4 1001 A 1 HETATM 31 C CAO UF4 . . . B 2 14.257 20.814 0.095 1 72.53 ? CAO UF4 1001 A 1 HETATM 32 C CAN UF4 . . . B 2 14.44 20.8 1.475 1 75.69 ? CAN UF4 1001 A 1 HETATM 33 O OAQ UF4 . . . B 2 13.99 19.709 2.191 1 87.12 ? OAQ UF4 1001 A 1 HETATM 34 C CBA UF4 . . . B 2 13.663 19.759 3.608 1 83.75 ? CBA UF4 1001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #