data_6WXP
#
_model_server_result.job_id            2Zk66sCsiQaaRWvZuVP2bw 
_model_server_result.datetime_utc      '2024-11-16 00:52:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    6WXP 
#
_exptl.entry_id    6WXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.497 
_cell.angle_gamma         90 
_cell.entry_id            6WXP 
_cell.length_a            43.91 
_cell.length_b            101.16 
_cell.length_c            117.73 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,L,M,N,O,P,Q,V,W 1 1 
C,D,R,S,T,X,Y 2 1 
E,F,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 35 A GLU 31 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc2 A OE2 GLU 35 A GLU 31 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc3 A OE1 GLU 158 A GLU 154 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc4 A OE2 GLU 158 A GLU 154 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? 
metalc ? metalc5 G CA CA . A CA 201 1_555 B OE1 GLU 35 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc6 G CA CA . A CA 201 1_555 B OE2 GLU 35 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc7 G CA CA . A CA 201 1_555 B OE1 GLU 158 B GLU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc8 C OE1 GLU 35 C GLU 31 1_555 S CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc9 C OE2 GLU 35 C GLU 31 1_555 S CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
metalc ? metalc10 C OE1 GLU 158 C GLU 154 1_555 S CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc11 D OE1 GLU 35 D GLU 31 1_555 S CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc12 D OE2 GLU 35 D GLU 31 1_555 S CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? 
metalc ? metalc13 D OE1 GLU 158 D GLU 154 1_555 S CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc14 D OE2 GLU 158 D GLU 154 1_555 S CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc15 E OE1 GLU 35 E GLU 31 1_555 U CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc16 E OE2 GLU 35 E GLU 31 1_555 U CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc17 E OE1 GLU 158 E GLU 154 1_555 U CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? 
metalc ? metalc18 E OE2 GLU 158 E GLU 154 1_555 U CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc19 U CA CA . E CA 201 1_555 F OE1 GLU 35 F GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc20 U CA CA . E CA 201 1_555 F OE2 GLU 35 F GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc21 U CA CA . E CA 201 1_555 F OE1 GLU 158 F GLU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc22 U CA CA . E CA 201 1_555 F OE2 GLU 158 F GLU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     6WXP 
_atom_sites.fract_transf_matrix[1][1]    0.022774 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002192 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 CA A 1 201 1 CA CA . 
H 3 EDO A 1 202 3 EDO EDO . 
I 3 EDO A 1 203 9 EDO EDO . 
J 3 EDO A 1 204 10 EDO EDO . 
K 3 EDO A 1 205 16 EDO EDO . 
L 3 EDO A 1 206 17 EDO EDO . 
M 3 EDO B 1 201 1 EDO EDO . 
N 3 EDO B 1 202 4 EDO EDO . 
O 3 EDO B 1 203 5 EDO EDO . 
P 3 EDO B 1 204 6 EDO EDO . 
Q 3 EDO B 1 205 7 EDO EDO . 
R 3 EDO C 1 201 2 EDO EDO . 
S 2 CA D 1 201 11 CA CA . 
T 3 EDO D 1 202 15 EDO EDO . 
U 2 CA E 1 201 21 CA CA . 
V 4 HOH A 1 301 44 HOH HOH . 
V 4 HOH A 2 302 6 HOH HOH . 
V 4 HOH A 3 303 46 HOH HOH . 
V 4 HOH A 4 304 3 HOH HOH . 
V 4 HOH A 5 305 5 HOH HOH . 
V 4 HOH A 6 306 39 HOH HOH . 
V 4 HOH A 7 307 7 HOH HOH . 
V 4 HOH A 8 308 53 HOH HOH . 
V 4 HOH A 9 309 33 HOH HOH . 
V 4 HOH A 10 310 4 HOH HOH . 
V 4 HOH A 11 311 8 HOH HOH . 
V 4 HOH A 12 312 10 HOH HOH . 
V 4 HOH A 13 313 18 HOH HOH . 
V 4 HOH A 14 314 11 HOH HOH . 
V 4 HOH A 15 315 40 HOH HOH . 
V 4 HOH A 16 316 38 HOH HOH . 
V 4 HOH A 17 317 50 HOH HOH . 
V 4 HOH A 18 318 13 HOH HOH . 
V 4 HOH A 19 319 47 HOH HOH . 
V 4 HOH A 20 320 54 HOH HOH . 
V 4 HOH A 21 321 41 HOH HOH . 
V 4 HOH A 22 322 16 HOH HOH . 
V 4 HOH A 23 323 22 HOH HOH . 
V 4 HOH A 24 324 23 HOH HOH . 
V 4 HOH A 25 325 49 HOH HOH . 
W 4 HOH B 1 301 59 HOH HOH . 
W 4 HOH B 2 302 9 HOH HOH . 
W 4 HOH B 3 303 1 HOH HOH . 
W 4 HOH B 4 304 15 HOH HOH . 
W 4 HOH B 5 305 37 HOH HOH . 
W 4 HOH B 6 306 28 HOH HOH . 
W 4 HOH B 7 307 32 HOH HOH . 
W 4 HOH B 8 308 34 HOH HOH . 
W 4 HOH B 9 309 12 HOH HOH . 
W 4 HOH B 10 310 35 HOH HOH . 
W 4 HOH B 11 311 29 HOH HOH . 
W 4 HOH B 12 312 51 HOH HOH . 
W 4 HOH B 13 313 17 HOH HOH . 
W 4 HOH B 14 314 25 HOH HOH . 
W 4 HOH B 15 315 43 HOH HOH . 
W 4 HOH B 16 316 52 HOH HOH . 
W 4 HOH B 17 317 57 HOH HOH . 
X 4 HOH C 1 301 45 HOH HOH . 
X 4 HOH C 2 302 2 HOH HOH . 
X 4 HOH C 3 303 36 HOH HOH . 
X 4 HOH C 4 304 27 HOH HOH . 
X 4 HOH C 5 305 19 HOH HOH . 
X 4 HOH C 6 306 42 HOH HOH . 
X 4 HOH C 7 307 48 HOH HOH . 
X 4 HOH C 8 308 26 HOH HOH . 
Y 4 HOH D 1 301 56 HOH HOH . 
Y 4 HOH D 2 302 60 HOH HOH . 
Y 4 HOH D 3 303 30 HOH HOH . 
Y 4 HOH D 4 304 14 HOH HOH . 
Y 4 HOH D 5 305 55 HOH HOH . 
Y 4 HOH D 6 306 21 HOH HOH . 
Y 4 HOH D 7 307 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 3 8.594 8.129 20.422 1 43.61 ? C1 EDO 201 B 1 
HETATM 2 O O1 EDO . . . M 3 8.284 8.749 21.676 1 45.34 ? O1 EDO 201 B 1 
HETATM 3 C C2 EDO . . . M 3 8.748 9.203 19.353 1 44.99 ? C2 EDO 201 B 1 
HETATM 4 O O2 EDO . . . M 3 9.827 10.08 19.698 1 50.78 ? O2 EDO 201 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           4 
#