data_6WY9 # _model_server_result.job_id T4SVxWln8LK9RNZsivO0RQ _model_server_result.datetime_utc '2024-10-25 20:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":410}' # _entry.id 6WY9 # _exptl.entry_id 6WY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WY9 _cell.length_a 99.5 _cell.length_b 123.2 _cell.length_c 139.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall 'I 2b 2c' _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 61.6 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 259 n n C1 C2 GOL sing 260 n n C1 H11 GOL sing 261 n n C1 H12 GOL sing 262 n n O1 HO1 GOL sing 263 n n C2 O2 GOL sing 264 n n C2 C3 GOL sing 265 n n C2 H2 GOL sing 266 n n O2 HO2 GOL sing 267 n n C3 O3 GOL sing 268 n n C3 H31 GOL sing 269 n n C3 H32 GOL sing 270 n n O3 HO3 GOL sing 271 n n # _atom_sites.entry_id 6WY9 _atom_sites.fract_transf_matrix[1][1] 0.01005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FDA A 1 401 1 FDA FDA . D 4 1PE A 1 402 1 1PE 1PE . E 5 GOL A 1 403 2 GOL GOL . F 5 GOL A 1 404 3 GOL GOL . G 5 GOL A 1 405 4 GOL GOL . H 5 GOL A 1 406 5 GOL GOL . I 5 GOL A 1 407 8 GOL GOL . J 5 GOL A 1 408 9 GOL GOL . K 5 GOL A 1 409 12 GOL GOL . L 5 GOL A 1 410 13 GOL GOL . M 6 CL A 1 411 1 CL CL . N 5 GOL B 1 401 1 GOL GOL . O 5 GOL B 1 402 6 GOL GOL . P 5 GOL B 1 403 7 GOL GOL . Q 5 GOL B 1 404 10 GOL GOL . R 5 GOL B 1 405 11 GOL GOL . S 6 CL B 1 406 2 CL CL . T 7 HOH A 1 501 23 HOH HOH . T 7 HOH A 2 502 107 HOH HOH . T 7 HOH A 3 503 134 HOH HOH . T 7 HOH A 4 504 155 HOH HOH . T 7 HOH A 5 505 5 HOH HOH . T 7 HOH A 6 506 126 HOH HOH . T 7 HOH A 7 507 158 HOH HOH . T 7 HOH A 8 508 80 HOH HOH . T 7 HOH A 9 509 76 HOH HOH . T 7 HOH A 10 510 92 HOH HOH . T 7 HOH A 11 511 148 HOH HOH . T 7 HOH A 12 512 90 HOH HOH . T 7 HOH A 13 513 59 HOH HOH . T 7 HOH A 14 514 1 HOH HOH . T 7 HOH A 15 515 65 HOH HOH . T 7 HOH A 16 516 19 HOH HOH . T 7 HOH A 17 517 52 HOH HOH . T 7 HOH A 18 518 33 HOH HOH . T 7 HOH A 19 519 124 HOH HOH . T 7 HOH A 20 520 130 HOH HOH . T 7 HOH A 21 521 15 HOH HOH . T 7 HOH A 22 522 138 HOH HOH . T 7 HOH A 23 523 185 HOH HOH . T 7 HOH A 24 524 88 HOH HOH . T 7 HOH A 25 525 17 HOH HOH . T 7 HOH A 26 526 186 HOH HOH . T 7 HOH A 27 527 56 HOH HOH . T 7 HOH A 28 528 127 HOH HOH . T 7 HOH A 29 529 82 HOH HOH . T 7 HOH A 30 530 21 HOH HOH . T 7 HOH A 31 531 51 HOH HOH . T 7 HOH A 32 532 121 HOH HOH . T 7 HOH A 33 533 73 HOH HOH . T 7 HOH A 34 534 66 HOH HOH . T 7 HOH A 35 535 84 HOH HOH . T 7 HOH A 36 536 47 HOH HOH . T 7 HOH A 37 537 78 HOH HOH . T 7 HOH A 38 538 7 HOH HOH . T 7 HOH A 39 539 35 HOH HOH . T 7 HOH A 40 540 43 HOH HOH . T 7 HOH A 41 541 119 HOH HOH . T 7 HOH A 42 542 8 HOH HOH . T 7 HOH A 43 543 29 HOH HOH . T 7 HOH A 44 544 74 HOH HOH . T 7 HOH A 45 545 57 HOH HOH . T 7 HOH A 46 546 153 HOH HOH . T 7 HOH A 47 547 116 HOH HOH . T 7 HOH A 48 548 18 HOH HOH . T 7 HOH A 49 549 108 HOH HOH . T 7 HOH A 50 550 142 HOH HOH . T 7 HOH A 51 551 22 HOH HOH . T 7 HOH A 52 552 91 HOH HOH . T 7 HOH A 53 553 3 HOH HOH . T 7 HOH A 54 554 146 HOH HOH . T 7 HOH A 55 555 104 HOH HOH . T 7 HOH A 56 556 30 HOH HOH . T 7 HOH A 57 557 194 HOH HOH . T 7 HOH A 58 558 136 HOH HOH . T 7 HOH A 59 559 48 HOH HOH . T 7 HOH A 60 560 190 HOH HOH . T 7 HOH A 61 561 100 HOH HOH . T 7 HOH A 62 562 31 HOH HOH . T 7 HOH A 63 563 172 HOH HOH . T 7 HOH A 64 564 105 HOH HOH . T 7 HOH A 65 565 157 HOH HOH . T 7 HOH A 66 566 179 HOH HOH . T 7 HOH A 67 567 176 HOH HOH . T 7 HOH A 68 568 175 HOH HOH . T 7 HOH A 69 569 187 HOH HOH . T 7 HOH A 70 570 173 HOH HOH . T 7 HOH A 71 571 184 HOH HOH . T 7 HOH A 72 572 191 HOH HOH . T 7 HOH A 73 573 177 HOH HOH . T 7 HOH A 74 574 86 HOH HOH . T 7 HOH A 75 575 183 HOH HOH . T 7 HOH A 76 576 181 HOH HOH . T 7 HOH A 77 577 182 HOH HOH . T 7 HOH A 78 578 192 HOH HOH . T 7 HOH A 79 579 178 HOH HOH . T 7 HOH A 80 580 197 HOH HOH . T 7 HOH A 81 581 174 HOH HOH . T 7 HOH A 82 582 162 HOH HOH . T 7 HOH A 83 583 196 HOH HOH . T 7 HOH A 84 584 180 HOH HOH . U 7 HOH B 1 501 132 HOH HOH . U 7 HOH B 2 502 151 HOH HOH . U 7 HOH B 3 503 147 HOH HOH . U 7 HOH B 4 504 152 HOH HOH . U 7 HOH B 5 505 39 HOH HOH . U 7 HOH B 6 506 53 HOH HOH . U 7 HOH B 7 507 61 HOH HOH . U 7 HOH B 8 508 45 HOH HOH . U 7 HOH B 9 509 6 HOH HOH . U 7 HOH B 10 510 67 HOH HOH . U 7 HOH B 11 511 163 HOH HOH . U 7 HOH B 12 512 4 HOH HOH . U 7 HOH B 13 513 38 HOH HOH . U 7 HOH B 14 514 77 HOH HOH . U 7 HOH B 15 515 113 HOH HOH . U 7 HOH B 16 516 14 HOH HOH . U 7 HOH B 17 517 123 HOH HOH . U 7 HOH B 18 518 115 HOH HOH . U 7 HOH B 19 519 89 HOH HOH . U 7 HOH B 20 520 34 HOH HOH . U 7 HOH B 21 521 145 HOH HOH . U 7 HOH B 22 522 28 HOH HOH . U 7 HOH B 23 523 70 HOH HOH . U 7 HOH B 24 524 75 HOH HOH . U 7 HOH B 25 525 10 HOH HOH . U 7 HOH B 26 526 58 HOH HOH . U 7 HOH B 27 527 135 HOH HOH . U 7 HOH B 28 528 2 HOH HOH . U 7 HOH B 29 529 95 HOH HOH . U 7 HOH B 30 530 85 HOH HOH . U 7 HOH B 31 531 206 HOH HOH . U 7 HOH B 32 532 46 HOH HOH . U 7 HOH B 33 533 97 HOH HOH . U 7 HOH B 34 534 40 HOH HOH . U 7 HOH B 35 535 71 HOH HOH . U 7 HOH B 36 536 55 HOH HOH . U 7 HOH B 37 537 125 HOH HOH . U 7 HOH B 38 538 42 HOH HOH . U 7 HOH B 39 539 32 HOH HOH . U 7 HOH B 40 540 64 HOH HOH . U 7 HOH B 41 541 141 HOH HOH . U 7 HOH B 42 542 140 HOH HOH . U 7 HOH B 43 543 20 HOH HOH . U 7 HOH B 44 544 13 HOH HOH . U 7 HOH B 45 545 25 HOH HOH . U 7 HOH B 46 546 27 HOH HOH . U 7 HOH B 47 547 102 HOH HOH . U 7 HOH B 48 548 139 HOH HOH . U 7 HOH B 49 549 93 HOH HOH . U 7 HOH B 50 550 149 HOH HOH . U 7 HOH B 51 551 68 HOH HOH . U 7 HOH B 52 552 72 HOH HOH . U 7 HOH B 53 553 37 HOH HOH . U 7 HOH B 54 554 150 HOH HOH . U 7 HOH B 55 555 81 HOH HOH . U 7 HOH B 56 556 94 HOH HOH . U 7 HOH B 57 557 159 HOH HOH . U 7 HOH B 58 558 69 HOH HOH . U 7 HOH B 59 559 12 HOH HOH . U 7 HOH B 60 560 44 HOH HOH . U 7 HOH B 61 561 9 HOH HOH . U 7 HOH B 62 562 63 HOH HOH . U 7 HOH B 63 563 26 HOH HOH . U 7 HOH B 64 564 87 HOH HOH . U 7 HOH B 65 565 49 HOH HOH . U 7 HOH B 66 566 62 HOH HOH . U 7 HOH B 67 567 60 HOH HOH . U 7 HOH B 68 568 103 HOH HOH . U 7 HOH B 69 569 112 HOH HOH . U 7 HOH B 70 570 11 HOH HOH . U 7 HOH B 71 571 101 HOH HOH . U 7 HOH B 72 572 50 HOH HOH . U 7 HOH B 73 573 36 HOH HOH . U 7 HOH B 74 574 79 HOH HOH . U 7 HOH B 75 575 16 HOH HOH . U 7 HOH B 76 576 24 HOH HOH . U 7 HOH B 77 577 144 HOH HOH . U 7 HOH B 78 578 120 HOH HOH . U 7 HOH B 79 579 168 HOH HOH . U 7 HOH B 80 580 170 HOH HOH . U 7 HOH B 81 581 41 HOH HOH . U 7 HOH B 82 582 195 HOH HOH . U 7 HOH B 83 583 154 HOH HOH . U 7 HOH B 84 584 164 HOH HOH . U 7 HOH B 85 585 106 HOH HOH . U 7 HOH B 86 586 111 HOH HOH . U 7 HOH B 87 587 110 HOH HOH . U 7 HOH B 88 588 133 HOH HOH . U 7 HOH B 89 589 201 HOH HOH . U 7 HOH B 90 590 198 HOH HOH . U 7 HOH B 91 591 114 HOH HOH . U 7 HOH B 92 592 188 HOH HOH . U 7 HOH B 93 593 167 HOH HOH . U 7 HOH B 94 594 204 HOH HOH . U 7 HOH B 95 595 118 HOH HOH . U 7 HOH B 96 596 203 HOH HOH . U 7 HOH B 97 597 98 HOH HOH . U 7 HOH B 98 598 165 HOH HOH . U 7 HOH B 99 599 169 HOH HOH . U 7 HOH B 100 600 143 HOH HOH . U 7 HOH B 101 601 189 HOH HOH . U 7 HOH B 102 602 200 HOH HOH . U 7 HOH B 103 603 96 HOH HOH . U 7 HOH B 104 604 137 HOH HOH . U 7 HOH B 105 605 193 HOH HOH . U 7 HOH B 106 606 122 HOH HOH . U 7 HOH B 107 607 171 HOH HOH . U 7 HOH B 108 608 205 HOH HOH . U 7 HOH B 109 609 109 HOH HOH . U 7 HOH B 110 610 199 HOH HOH . U 7 HOH B 111 611 131 HOH HOH . U 7 HOH B 112 612 54 HOH HOH . U 7 HOH B 113 613 129 HOH HOH . U 7 HOH B 114 614 202 HOH HOH . U 7 HOH B 115 615 83 HOH HOH . U 7 HOH B 116 616 207 HOH HOH . U 7 HOH B 117 617 166 HOH HOH . U 7 HOH B 118 618 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 -22.224 15.573 -18.751 1 98.49 ? C1 GOL 410 A 1 HETATM 2 O O1 GOL . . . L 5 -23.031 16.36 -19.505 1 96.58 ? O1 GOL 410 A 1 HETATM 3 C C2 GOL . . . L 5 -22.674 15.594 -17.266 1 101.42 ? C2 GOL 410 A 1 HETATM 4 O O2 GOL . . . L 5 -23.715 14.762 -17.029 1 102.28 ? O2 GOL 410 A 1 HETATM 5 C C3 GOL . . . L 5 -21.327 15.223 -16.588 1 102.96 ? C3 GOL 410 A 1 HETATM 6 O O3 GOL . . . L 5 -21.581 14.243 -15.642 1 103.55 ? O3 GOL 410 A 1 HETATM 7 H H11 GOL . . . L 5 -22.23 14.653 -19.057 1 118.25 ? H11 GOL 410 A 1 HETATM 8 H H12 GOL . . . L 5 -21.299 15.862 -18.793 1 118.25 ? H12 GOL 410 A 1 HETATM 9 H HO1 GOL . . . L 5 -23.048 17.103 -19.127 1 115.96 ? HO1 GOL 410 A 1 HETATM 10 H H2 GOL . . . L 5 -23.025 16.44 -16.946 1 121.77 ? H2 GOL 410 A 1 HETATM 11 H HO2 GOL . . . L 5 -24.369 15.272 -16.788 1 122.8 ? HO2 GOL 410 A 1 HETATM 12 H H31 GOL . . . L 5 -20.704 14.938 -17.275 1 123.61 ? H31 GOL 410 A 1 HETATM 13 H H32 GOL . . . L 5 -20.94 16.028 -16.209 1 123.61 ? H32 GOL 410 A 1 HETATM 14 H HO3 GOL . . . L 5 -20.842 13.874 -15.457 1 124.33 ? HO3 GOL 410 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #