data_6WYB # _model_server_result.job_id xZzW9M9LQSyxXaZrTQJ8eA _model_server_result.datetime_utc '2024-11-23 21:22:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":802}' # _entry.id 6WYB # _exptl.entry_id 6WYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.186 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3',3''-phosphanetriyltripropanoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WYB _cell.length_a 68.97 _cell.length_b 112.94 _cell.length_c 148.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 B N1 G 6 B G 6 1_555 C N3 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 G 6 B G 6 1_555 C O2 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 G 6 B G 6 1_555 C N4 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 C 7 B C 7 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 C 7 B C 7 1_555 C O6 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 C 7 B C 7 1_555 C N2 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 A 8 B A 8 1_555 C N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N6 A 8 B A 8 1_555 C O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 U 9 B U 9 1_555 C N1 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 U 9 B U 9 1_555 C N6 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 A 10 B A 10 1_555 C N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N6 A 10 B A 10 1_555 C O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 C 11 B C 11 1_555 C N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 C 11 B C 11 1_555 C O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 C 11 B C 11 1_555 C N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 G 12 B G 12 1_555 C N3 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 G 12 B G 12 1_555 C O2 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 G 12 B G 12 1_555 C N4 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 A 13 B A 13 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N6 A 13 B A 13 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 C 14 B C 14 1_555 C N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 C 14 B C 14 1_555 C O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 C 14 B C 14 1_555 C N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 C 15 B C 15 1_555 C N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N4 C 15 B C 15 1_555 C O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O2 C 15 B C 15 1_555 C N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-DT PAIR' hydrog27 B N1 A 16 B A 16 1_555 C N3 DT 1 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H15 O6 P' _chem_comp.formula_weight 250.186 _chem_comp.id TCE _chem_comp.mon_nstd_flag . _chem_comp.name "3,3',3''-phosphanetriyltripropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[bis(2-carboxyethyl)phosphanyl]propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C14 TCE doub 567 n n C14 O15 TCE sing 568 n n C14 C5 TCE sing 569 n n O15 HO15 TCE sing 570 n n C2 C5 TCE sing 571 n n C5 H5 TCE sing 572 n n C5 H5A TCE sing 573 n n C2 P TCE sing 574 n n C2 H2 TCE sing 575 n n C2 H2A TCE sing 576 n n C1 P TCE sing 577 n n P C3 TCE sing 578 n n C3 C6 TCE sing 579 n n C3 H3 TCE sing 580 n n C3 H3A TCE sing 581 n n C6 C8 TCE sing 582 n n C6 H6 TCE sing 583 n n C6 H6A TCE sing 584 n n O10 C8 TCE doub 585 n n C8 O9 TCE sing 586 n n O9 HO9 TCE sing 587 n n C4 C1 TCE sing 588 n n C1 H1 TCE sing 589 n n C1 H1A TCE sing 590 n n C11 C4 TCE sing 591 n n C4 H4 TCE sing 592 n n C4 H4A TCE sing 593 n n O13 C11 TCE doub 594 n n O12 C11 TCE sing 595 n n O12 HO12 TCE sing 596 n n # _atom_sites.entry_id 6WYB _atom_sites.fract_transf_matrix[1][1] 0.014499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 801 1 SO4 SO4 . E 5 TCE A 1 802 1 TCE TCE . F 6 EDO A 1 803 1 EDO EDO . G 6 EDO A 1 804 2 EDO EDO . H 6 EDO A 1 805 3 EDO EDO . I 6 EDO A 1 806 4 EDO EDO . J 7 HOH A 1 901 58 HOH HOH . J 7 HOH A 2 902 146 HOH HOH . J 7 HOH A 3 903 84 HOH HOH . J 7 HOH A 4 904 56 HOH HOH . J 7 HOH A 5 905 60 HOH HOH . J 7 HOH A 6 906 117 HOH HOH . J 7 HOH A 7 907 159 HOH HOH . J 7 HOH A 8 908 85 HOH HOH . J 7 HOH A 9 909 92 HOH HOH . J 7 HOH A 10 910 149 HOH HOH . J 7 HOH A 11 911 31 HOH HOH . J 7 HOH A 12 912 66 HOH HOH . J 7 HOH A 13 913 103 HOH HOH . J 7 HOH A 14 914 15 HOH HOH . J 7 HOH A 15 915 27 HOH HOH . J 7 HOH A 16 916 137 HOH HOH . J 7 HOH A 17 917 48 HOH HOH . J 7 HOH A 18 918 14 HOH HOH . J 7 HOH A 19 919 33 HOH HOH . J 7 HOH A 20 920 63 HOH HOH . J 7 HOH A 21 921 24 HOH HOH . J 7 HOH A 22 922 70 HOH HOH . J 7 HOH A 23 923 41 HOH HOH . J 7 HOH A 24 924 76 HOH HOH . J 7 HOH A 25 925 36 HOH HOH . J 7 HOH A 26 926 1 HOH HOH . J 7 HOH A 27 927 67 HOH HOH . J 7 HOH A 28 928 105 HOH HOH . J 7 HOH A 29 929 64 HOH HOH . J 7 HOH A 30 930 101 HOH HOH . J 7 HOH A 31 931 62 HOH HOH . J 7 HOH A 32 932 111 HOH HOH . J 7 HOH A 33 933 29 HOH HOH . J 7 HOH A 34 934 54 HOH HOH . J 7 HOH A 35 935 129 HOH HOH . J 7 HOH A 36 936 74 HOH HOH . J 7 HOH A 37 937 116 HOH HOH . J 7 HOH A 38 938 28 HOH HOH . J 7 HOH A 39 939 34 HOH HOH . J 7 HOH A 40 940 43 HOH HOH . J 7 HOH A 41 941 51 HOH HOH . J 7 HOH A 42 942 16 HOH HOH . J 7 HOH A 43 943 12 HOH HOH . J 7 HOH A 44 944 22 HOH HOH . J 7 HOH A 45 945 40 HOH HOH . J 7 HOH A 46 946 82 HOH HOH . J 7 HOH A 47 947 115 HOH HOH . J 7 HOH A 48 948 95 HOH HOH . J 7 HOH A 49 949 2 HOH HOH . J 7 HOH A 50 950 37 HOH HOH . J 7 HOH A 51 951 9 HOH HOH . J 7 HOH A 52 952 44 HOH HOH . J 7 HOH A 53 953 154 HOH HOH . J 7 HOH A 54 954 142 HOH HOH . J 7 HOH A 55 955 6 HOH HOH . J 7 HOH A 56 956 3 HOH HOH . J 7 HOH A 57 957 35 HOH HOH . J 7 HOH A 58 958 5 HOH HOH . J 7 HOH A 59 959 134 HOH HOH . J 7 HOH A 60 960 17 HOH HOH . J 7 HOH A 61 961 93 HOH HOH . J 7 HOH A 62 962 52 HOH HOH . J 7 HOH A 63 963 81 HOH HOH . J 7 HOH A 64 964 53 HOH HOH . J 7 HOH A 65 965 94 HOH HOH . J 7 HOH A 66 966 121 HOH HOH . J 7 HOH A 67 967 132 HOH HOH . J 7 HOH A 68 968 19 HOH HOH . J 7 HOH A 69 969 4 HOH HOH . J 7 HOH A 70 970 89 HOH HOH . J 7 HOH A 71 971 69 HOH HOH . J 7 HOH A 72 972 23 HOH HOH . J 7 HOH A 73 973 155 HOH HOH . J 7 HOH A 74 974 38 HOH HOH . J 7 HOH A 75 975 18 HOH HOH . J 7 HOH A 76 976 8 HOH HOH . J 7 HOH A 77 977 20 HOH HOH . J 7 HOH A 78 978 30 HOH HOH . J 7 HOH A 79 979 80 HOH HOH . J 7 HOH A 80 980 10 HOH HOH . J 7 HOH A 81 981 88 HOH HOH . J 7 HOH A 82 982 68 HOH HOH . J 7 HOH A 83 983 136 HOH HOH . J 7 HOH A 84 984 13 HOH HOH . J 7 HOH A 85 985 75 HOH HOH . J 7 HOH A 86 986 77 HOH HOH . J 7 HOH A 87 987 108 HOH HOH . J 7 HOH A 88 988 26 HOH HOH . J 7 HOH A 89 989 131 HOH HOH . J 7 HOH A 90 990 139 HOH HOH . J 7 HOH A 91 991 118 HOH HOH . J 7 HOH A 92 992 59 HOH HOH . J 7 HOH A 93 993 133 HOH HOH . J 7 HOH A 94 994 96 HOH HOH . J 7 HOH A 95 995 102 HOH HOH . J 7 HOH A 96 996 78 HOH HOH . J 7 HOH A 97 997 32 HOH HOH . J 7 HOH A 98 998 49 HOH HOH . J 7 HOH A 99 999 55 HOH HOH . J 7 HOH A 100 1000 157 HOH HOH . J 7 HOH A 101 1001 39 HOH HOH . J 7 HOH A 102 1002 7 HOH HOH . J 7 HOH A 103 1003 140 HOH HOH . J 7 HOH A 104 1004 104 HOH HOH . J 7 HOH A 105 1005 126 HOH HOH . J 7 HOH A 106 1006 97 HOH HOH . J 7 HOH A 107 1007 50 HOH HOH . J 7 HOH A 108 1008 144 HOH HOH . J 7 HOH A 109 1009 71 HOH HOH . J 7 HOH A 110 1010 90 HOH HOH . J 7 HOH A 111 1011 141 HOH HOH . J 7 HOH A 112 1012 130 HOH HOH . J 7 HOH A 113 1013 147 HOH HOH . J 7 HOH A 114 1014 98 HOH HOH . J 7 HOH A 115 1015 135 HOH HOH . J 7 HOH A 116 1016 112 HOH HOH . J 7 HOH A 117 1017 42 HOH HOH . J 7 HOH A 118 1018 143 HOH HOH . J 7 HOH A 119 1019 11 HOH HOH . J 7 HOH A 120 1020 119 HOH HOH . J 7 HOH A 121 1021 124 HOH HOH . J 7 HOH A 122 1022 46 HOH HOH . J 7 HOH A 123 1023 61 HOH HOH . J 7 HOH A 124 1024 106 HOH HOH . J 7 HOH A 125 1025 122 HOH HOH . J 7 HOH A 126 1026 107 HOH HOH . J 7 HOH A 127 1027 145 HOH HOH . J 7 HOH A 128 1028 91 HOH HOH . J 7 HOH A 129 1029 125 HOH HOH . J 7 HOH A 130 1030 65 HOH HOH . J 7 HOH A 131 1031 113 HOH HOH . J 7 HOH A 132 1032 169 HOH HOH . J 7 HOH A 133 1033 21 HOH HOH . J 7 HOH A 134 1034 109 HOH HOH . J 7 HOH A 135 1035 156 HOH HOH . J 7 HOH A 136 1036 114 HOH HOH . J 7 HOH A 137 1037 138 HOH HOH . J 7 HOH A 138 1038 127 HOH HOH . J 7 HOH A 139 1039 123 HOH HOH . K 7 HOH B 1 101 25 HOH HOH . K 7 HOH B 2 102 128 HOH HOH . K 7 HOH B 3 103 83 HOH HOH . L 7 HOH C 1 101 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 TCE . . . E 5 -6.606 25.389 39.211 1 53.02 ? O16 TCE 802 A 1 HETATM 2 C C14 TCE . . . E 5 -6.685 24.25 38.65 1 53.02 ? C14 TCE 802 A 1 HETATM 3 O O15 TCE . . . E 5 -6.837 23.175 39.338 1 53.02 ? O15 TCE 802 A 1 HETATM 4 C C5 TCE . . . E 5 -6.565 24.174 37.126 1 53.02 ? C5 TCE 802 A 1 HETATM 5 C C2 TCE . . . E 5 -6.161 25.54 36.56 1 55.89 ? C2 TCE 802 A 1 HETATM 6 P P TCE . . . E 5 -4.391 25.585 35.878 1 68.1 ? P TCE 802 A 1 HETATM 7 C C3 TCE . . . E 5 -4.177 24.5 34.376 1 59.68 ? C3 TCE 802 A 1 HETATM 8 C C6 TCE . . . E 5 -4.425 25.311 33.105 1 53.02 ? C6 TCE 802 A 1 HETATM 9 C C8 TCE . . . E 5 -3.147 26.02 32.633 1 70.51 ? C8 TCE 802 A 1 HETATM 10 O O10 TCE . . . E 5 -2.074 25.366 32.428 1 54.52 ? O10 TCE 802 A 1 HETATM 11 O O9 TCE . . . E 5 -3.183 27.269 32.432 1 66.14 ? O9 TCE 802 A 1 HETATM 12 C C1 TCE . . . E 5 -3.061 25.33 37.172 1 53.02 ? C1 TCE 802 A 1 HETATM 13 C C4 TCE . . . E 5 -2.607 26.692 37.735 1 53.02 ? C4 TCE 802 A 1 HETATM 14 C C11 TCE . . . E 5 -2.652 27.827 36.684 1 61.38 ? C11 TCE 802 A 1 HETATM 15 O O12 TCE . . . E 5 -3.679 28.587 36.535 1 74.83 ? O12 TCE 802 A 1 HETATM 16 O O13 TCE . . . E 5 -1.65 28.005 35.943 1 53.02 ? O13 TCE 802 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #