data_6WYO # _model_server_result.job_id IVoGv5V7wKlK0amH_cH0uQ _model_server_result.datetime_utc '2024-11-06 19:33:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 6WYO # _exptl.entry_id 6WYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.421 _cell.angle_gamma 90 _cell.entry_id 6WYO _cell.length_a 53.087 _cell.length_b 123.993 _cell.length_c 55.012 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 189 A ASP 228 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc2 A OD1 ASP 189 A ASP 228 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc3 A OD1 ASP 191 A ASP 230 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 A OD2 ASP 191 A ASP 230 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc5 A O ASP 191 A ASP 230 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc6 A ND1 HIS 193 A HIS 232 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 A O HIS 193 A HIS 232 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc8 A O PHE 202 A PHE 241 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc9 A O ASP 205 A ASP 244 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc10 A O VAL 208 A VAL 247 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc11 A OG SER 212 A SER 251 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc12 A O VAL 213 A VAL 252 1_555 D K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc13 A O TYR 241 A TYR 280 1_555 E K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc14 A OD2 ASP 284 A ASP 323 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc15 C ZN ZN . A ZN 501 1_555 F O2 TSN . A TSN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc16 C ZN ZN . A ZN 501 1_555 F N1 TSN . A TSN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc17 C ZN ZN . A ZN 501 1_555 F O1 TSN . A TSN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc18 E K K . A K 503 1_555 K O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc19 E K K . A K 503 1_555 K O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc20 B O ASP 189 B ASP 228 1_555 H K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc21 B OD1 ASP 189 B ASP 228 1_555 H K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc22 B OD1 ASP 191 B ASP 230 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc23 B O ASP 191 B ASP 230 1_555 H K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc24 B ND1 HIS 193 B HIS 232 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc25 B O HIS 193 B HIS 232 1_555 H K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc26 B O PHE 202 B PHE 241 1_555 I K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc27 B O ASP 205 B ASP 244 1_555 I K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc28 B O VAL 208 B VAL 247 1_555 I K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc29 B OG SER 212 B SER 251 1_555 H K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc30 B O VAL 213 B VAL 252 1_555 H K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc31 B O TYR 241 B TYR 280 1_555 I K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc32 B OD2 ASP 284 B ASP 323 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc33 G ZN ZN . B ZN 501 1_555 J O1 TSN . B TSN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc34 G ZN ZN . B ZN 501 1_555 J O2 TSN . B TSN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc35 G ZN ZN . B ZN 501 1_555 J N1 TSN . B TSN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc36 I K K . B K 503 1_555 L O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc37 I K K . B K 503 1_555 L O HOH . B HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WYO _atom_sites.fract_transf_matrix[1][1] 0.018837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008553 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 6 ZN ZN . D 3 K A 1 502 6 K K . E 3 K A 1 503 7 K K . F 4 TSN A 1 504 7 TSN TSN . G 2 ZN B 1 501 5 ZN ZN . H 3 K B 1 502 5 K K . I 3 K B 1 503 8 K K . J 4 TSN B 1 504 1 TSN TSN . K 5 HOH A 1 601 9 HOH HOH . K 5 HOH A 2 602 126 HOH HOH . K 5 HOH A 3 603 37 HOH HOH . K 5 HOH A 4 604 84 HOH HOH . K 5 HOH A 5 605 15 HOH HOH . K 5 HOH A 6 606 6 HOH HOH . K 5 HOH A 7 607 83 HOH HOH . K 5 HOH A 8 608 88 HOH HOH . K 5 HOH A 9 609 76 HOH HOH . K 5 HOH A 10 610 107 HOH HOH . K 5 HOH A 11 611 109 HOH HOH . K 5 HOH A 12 612 80 HOH HOH . K 5 HOH A 13 613 96 HOH HOH . K 5 HOH A 14 614 71 HOH HOH . K 5 HOH A 15 615 69 HOH HOH . K 5 HOH A 16 616 79 HOH HOH . K 5 HOH A 17 617 4 HOH HOH . K 5 HOH A 18 618 10 HOH HOH . K 5 HOH A 19 619 54 HOH HOH . K 5 HOH A 20 620 38 HOH HOH . K 5 HOH A 21 621 45 HOH HOH . K 5 HOH A 22 622 36 HOH HOH . K 5 HOH A 23 623 110 HOH HOH . K 5 HOH A 24 624 127 HOH HOH . K 5 HOH A 25 625 18 HOH HOH . K 5 HOH A 26 626 133 HOH HOH . K 5 HOH A 27 627 104 HOH HOH . K 5 HOH A 28 628 42 HOH HOH . K 5 HOH A 29 629 64 HOH HOH . K 5 HOH A 30 630 47 HOH HOH . K 5 HOH A 31 631 34 HOH HOH . K 5 HOH A 32 632 41 HOH HOH . K 5 HOH A 33 633 66 HOH HOH . K 5 HOH A 34 634 8 HOH HOH . K 5 HOH A 35 635 40 HOH HOH . K 5 HOH A 36 636 24 HOH HOH . K 5 HOH A 37 637 94 HOH HOH . K 5 HOH A 38 638 89 HOH HOH . K 5 HOH A 39 639 22 HOH HOH . K 5 HOH A 40 640 116 HOH HOH . K 5 HOH A 41 641 13 HOH HOH . K 5 HOH A 42 642 140 HOH HOH . K 5 HOH A 43 643 97 HOH HOH . K 5 HOH A 44 644 17 HOH HOH . K 5 HOH A 45 645 119 HOH HOH . K 5 HOH A 46 646 103 HOH HOH . K 5 HOH A 47 647 129 HOH HOH . K 5 HOH A 48 648 87 HOH HOH . K 5 HOH A 49 649 20 HOH HOH . K 5 HOH A 50 650 49 HOH HOH . K 5 HOH A 51 651 5 HOH HOH . K 5 HOH A 52 652 65 HOH HOH . K 5 HOH A 53 653 113 HOH HOH . K 5 HOH A 54 654 100 HOH HOH . K 5 HOH A 55 655 29 HOH HOH . K 5 HOH A 56 656 117 HOH HOH . K 5 HOH A 57 657 92 HOH HOH . K 5 HOH A 58 658 112 HOH HOH . L 5 HOH B 1 601 48 HOH HOH . L 5 HOH B 2 602 68 HOH HOH . L 5 HOH B 3 603 134 HOH HOH . L 5 HOH B 4 604 39 HOH HOH . L 5 HOH B 5 605 136 HOH HOH . L 5 HOH B 6 606 90 HOH HOH . L 5 HOH B 7 607 77 HOH HOH . L 5 HOH B 8 608 11 HOH HOH . L 5 HOH B 9 609 26 HOH HOH . L 5 HOH B 10 610 27 HOH HOH . L 5 HOH B 11 611 58 HOH HOH . L 5 HOH B 12 612 67 HOH HOH . L 5 HOH B 13 613 1 HOH HOH . L 5 HOH B 14 614 3 HOH HOH . L 5 HOH B 15 615 102 HOH HOH . L 5 HOH B 16 616 52 HOH HOH . L 5 HOH B 17 617 63 HOH HOH . L 5 HOH B 18 618 21 HOH HOH . L 5 HOH B 19 619 61 HOH HOH . L 5 HOH B 20 620 73 HOH HOH . L 5 HOH B 21 621 72 HOH HOH . L 5 HOH B 22 622 32 HOH HOH . L 5 HOH B 23 623 35 HOH HOH . L 5 HOH B 24 624 23 HOH HOH . L 5 HOH B 25 625 108 HOH HOH . L 5 HOH B 26 626 141 HOH HOH . L 5 HOH B 27 627 123 HOH HOH . L 5 HOH B 28 628 31 HOH HOH . L 5 HOH B 29 629 7 HOH HOH . L 5 HOH B 30 630 111 HOH HOH . L 5 HOH B 31 631 95 HOH HOH . L 5 HOH B 32 632 19 HOH HOH . L 5 HOH B 33 633 138 HOH HOH . L 5 HOH B 34 634 60 HOH HOH . L 5 HOH B 35 635 46 HOH HOH . L 5 HOH B 36 636 33 HOH HOH . L 5 HOH B 37 637 16 HOH HOH . L 5 HOH B 38 638 25 HOH HOH . L 5 HOH B 39 639 43 HOH HOH . L 5 HOH B 40 640 55 HOH HOH . L 5 HOH B 41 641 51 HOH HOH . L 5 HOH B 42 642 50 HOH HOH . L 5 HOH B 43 643 30 HOH HOH . L 5 HOH B 44 644 78 HOH HOH . L 5 HOH B 45 645 130 HOH HOH . L 5 HOH B 46 646 74 HOH HOH . L 5 HOH B 47 647 81 HOH HOH . L 5 HOH B 48 648 122 HOH HOH . L 5 HOH B 49 649 137 HOH HOH . L 5 HOH B 50 650 125 HOH HOH . L 5 HOH B 51 651 124 HOH HOH . L 5 HOH B 52 652 128 HOH HOH . L 5 HOH B 53 653 139 HOH HOH . L 5 HOH B 54 654 70 HOH HOH . L 5 HOH B 55 655 57 HOH HOH . L 5 HOH B 56 656 115 HOH HOH . L 5 HOH B 57 657 44 HOH HOH . L 5 HOH B 58 658 118 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x -12.296 _atom_site.Cartn_y -50.915 _atom_site.Cartn_z -2.12 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #