data_6WZC # _model_server_result.job_id XLmNKyeBdSYFK-sCaoiaww _model_server_result.datetime_utc '2024-11-16 15:45:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6WZC # _exptl.entry_id 6WZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WZC _cell.length_a 82.46 _cell.length_b 82.46 _cell.length_c 53.118 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -41.23 71.412455 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -82.46 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 98 A CYS 98 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? metalc ? metalc1 A N ALA 1 A ALA 1 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 A OE1 GLU 4 A GLU 4 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc4 A OE2 GLU 4 A GLU 4 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc5 A OE1 GLU 4 A GLU 4 1_555 H CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc6 A OE1 GLU 4 A GLU 4 1_555 H CA CA . A CA 207 6_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc7 A SD MET 7 A MET 7 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc8 A OE1 GLU 8 A GLU 8 1_555 G CA CA . A CA 206 6_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc9 A O LYS 19 A LYS 19 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc10 A O LYS 19 A LYS 19 1_555 E CA CA . A CA 204 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc11 A O ALA 20 A ALA 20 1_555 F CA CA . A CA 205 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc12 A OD1 ASP 21 A ASP 21 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc13 A OD1 ASP 21 A ASP 21 1_555 E CA CA . A CA 204 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc14 A OD1 ASP 21 A ASP 21 1_555 F CA CA . A CA 205 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc15 A OD2 ASP 39 A ASP 39 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc16 A NE2 HIS 73 A HIS 73 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc17 A NE2 HIS 73 A HIS 73 1_555 D NI NI . A NI 203 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc18 A NE2 HIS 77 A HIS 77 1_555 D NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc19 A NE2 HIS 77 A HIS 77 1_555 D NI NI . A NI 203 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc20 A NE2 HIS 102 A HIS 102 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc21 B O1A HEC . A HEC 201 1_555 H CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc22 B O2A HEC . A HEC 201 1_555 H CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc23 B O1A HEC . A HEC 201 1_555 H CA CA . A CA 207 6_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc24 B O2A HEC . A HEC 201 1_555 H CA CA . A CA 207 6_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc25 C NI NI . A NI 202 1_555 L O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc26 C NI NI . A NI 202 1_555 L O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc27 C NI NI . A NI 202 1_555 L O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc28 E CA CA . A CA 204 1_555 L O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc29 E CA CA . A CA 204 1_555 L O HOH . A HOH 363 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc30 F CA CA . A CA 205 1_555 L O HOH . A HOH 385 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc31 G CA CA . A CA 206 1_555 L O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WZC _atom_sites.fract_transf_matrix[1][1] 0.012127 _atom_sites.fract_transf_matrix[1][2] 0.007002 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 150 HEC HEM . C 3 NI A 1 202 1 NI NI . D 3 NI A 1 203 2 NI NI . E 4 CA A 1 204 1 CA CA . F 4 CA A 1 205 2 CA CA . G 4 CA A 1 206 3 CA CA . H 4 CA A 1 207 4 CA CA . I 5 CL A 1 208 1 CL CL . J 5 CL A 1 209 2 CL CL . K 5 CL A 1 210 3 CL CL . L 6 HOH A 1 301 100 HOH HOH . L 6 HOH A 2 302 102 HOH HOH . L 6 HOH A 3 303 42 HOH HOH . L 6 HOH A 4 304 57 HOH HOH . L 6 HOH A 5 305 95 HOH HOH . L 6 HOH A 6 306 76 HOH HOH . L 6 HOH A 7 307 47 HOH HOH . L 6 HOH A 8 308 53 HOH HOH . L 6 HOH A 9 309 71 HOH HOH . L 6 HOH A 10 310 20 HOH HOH . L 6 HOH A 11 311 40 HOH HOH . L 6 HOH A 12 312 96 HOH HOH . L 6 HOH A 13 313 13 HOH HOH . L 6 HOH A 14 314 37 HOH HOH . L 6 HOH A 15 315 56 HOH HOH . L 6 HOH A 16 316 62 HOH HOH . L 6 HOH A 17 317 67 HOH HOH . L 6 HOH A 18 318 74 HOH HOH . L 6 HOH A 19 319 27 HOH HOH . L 6 HOH A 20 320 1 HOH HOH . L 6 HOH A 21 321 9 HOH HOH . L 6 HOH A 22 322 79 HOH HOH . L 6 HOH A 23 323 11 HOH HOH . L 6 HOH A 24 324 48 HOH HOH . L 6 HOH A 25 325 103 HOH HOH . L 6 HOH A 26 326 28 HOH HOH . L 6 HOH A 27 327 77 HOH HOH . L 6 HOH A 28 328 35 HOH HOH . L 6 HOH A 29 329 8 HOH HOH . L 6 HOH A 30 330 52 HOH HOH . L 6 HOH A 31 331 19 HOH HOH . L 6 HOH A 32 332 26 HOH HOH . L 6 HOH A 33 333 15 HOH HOH . L 6 HOH A 34 334 5 HOH HOH . L 6 HOH A 35 335 7 HOH HOH . L 6 HOH A 36 336 36 HOH HOH . L 6 HOH A 37 337 54 HOH HOH . L 6 HOH A 38 338 64 HOH HOH . L 6 HOH A 39 339 81 HOH HOH . L 6 HOH A 40 340 21 HOH HOH . L 6 HOH A 41 341 39 HOH HOH . L 6 HOH A 42 342 4 HOH HOH . L 6 HOH A 43 343 38 HOH HOH . L 6 HOH A 44 344 60 HOH HOH . L 6 HOH A 45 345 61 HOH HOH . L 6 HOH A 46 346 10 HOH HOH . L 6 HOH A 47 347 82 HOH HOH . L 6 HOH A 48 348 43 HOH HOH . L 6 HOH A 49 349 29 HOH HOH . L 6 HOH A 50 350 23 HOH HOH . L 6 HOH A 51 351 18 HOH HOH . L 6 HOH A 52 352 92 HOH HOH . L 6 HOH A 53 353 41 HOH HOH . L 6 HOH A 54 354 25 HOH HOH . L 6 HOH A 55 355 17 HOH HOH . L 6 HOH A 56 356 63 HOH HOH . L 6 HOH A 57 357 90 HOH HOH . L 6 HOH A 58 358 83 HOH HOH . L 6 HOH A 59 359 32 HOH HOH . L 6 HOH A 60 360 3 HOH HOH . L 6 HOH A 61 361 2 HOH HOH . L 6 HOH A 62 362 34 HOH HOH . L 6 HOH A 63 363 46 HOH HOH . L 6 HOH A 64 364 30 HOH HOH . L 6 HOH A 65 365 50 HOH HOH . L 6 HOH A 66 366 58 HOH HOH . L 6 HOH A 67 367 12 HOH HOH . L 6 HOH A 68 368 93 HOH HOH . L 6 HOH A 69 369 6 HOH HOH . L 6 HOH A 70 370 88 HOH HOH . L 6 HOH A 71 371 45 HOH HOH . L 6 HOH A 72 372 80 HOH HOH . L 6 HOH A 73 373 24 HOH HOH . L 6 HOH A 74 374 55 HOH HOH . L 6 HOH A 75 375 31 HOH HOH . L 6 HOH A 76 376 65 HOH HOH . L 6 HOH A 77 377 49 HOH HOH . L 6 HOH A 78 378 78 HOH HOH . L 6 HOH A 79 379 86 HOH HOH . L 6 HOH A 80 380 99 HOH HOH . L 6 HOH A 81 381 91 HOH HOH . L 6 HOH A 82 382 72 HOH HOH . L 6 HOH A 83 383 105 HOH HOH . L 6 HOH A 84 384 104 HOH HOH . L 6 HOH A 85 385 97 HOH HOH . L 6 HOH A 86 386 84 HOH HOH . L 6 HOH A 87 387 33 HOH HOH . L 6 HOH A 88 388 22 HOH HOH . L 6 HOH A 89 389 16 HOH HOH . L 6 HOH A 90 390 101 HOH HOH . L 6 HOH A 91 391 51 HOH HOH . L 6 HOH A 92 392 87 HOH HOH . L 6 HOH A 93 393 69 HOH HOH . L 6 HOH A 94 394 98 HOH HOH . L 6 HOH A 95 395 14 HOH HOH . L 6 HOH A 96 396 89 HOH HOH . L 6 HOH A 97 397 66 HOH HOH . L 6 HOH A 98 398 70 HOH HOH . L 6 HOH A 99 399 68 HOH HOH . L 6 HOH A 100 400 75 HOH HOH . L 6 HOH A 101 401 73 HOH HOH . L 6 HOH A 102 402 44 HOH HOH . L 6 HOH A 103 403 59 HOH HOH . L 6 HOH A 104 404 94 HOH HOH . L 6 HOH A 105 405 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -16.031 _atom_site.Cartn_y 27.766 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 34.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #