data_6WZV
#
_model_server_result.job_id            fFA7bRKi5QBGD6NsbRWc3g 
_model_server_result.datetime_utc      '2024-11-05 06:40:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wzv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    6WZV 
#
_exptl.entry_id    6WZV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.237 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(1R)-1-borono-3-methylbutyl]-Nalpha-(pyrazine-2-carbonyl)-D-phenylalaninamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6WZV 
_cell.length_a            186.276 
_cell.length_b            186.276 
_cell.length_c            159.718 
_cell.Z_PDB               54 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WZV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,J 1 1 
B,G,H,K 2 1 
C,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 114 A SER 855 1_555 D B14 UFY . A UFY 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 B OG SER 114 B SER 855 1_555 G B14 UFY . B UFY 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C19 H25 B N4 O4' 
_chem_comp.formula_weight    384.237 
_chem_comp.id                UFY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(1R)-1-borono-3-methylbutyl]-Nalpha-(pyrazine-2-carbonyl)-D-phenylalaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C17 UFY sing 362 n n 
C10 C11 UFY sing 363 n n 
C10 C9 UFY sing 364 n n 
C11 C12 UFY sing 365 n n 
O16 B14 UFY sing 366 n n 
C12 B14 UFY sing 367 n n 
C12 N13 UFY sing 368 n n 
B14 O15 UFY sing 369 n n 
N13 C20 UFY sing 370 n n 
C20 O21 UFY doub 371 n n 
C20 C19 UFY sing 372 n n 
C19 C22 UFY sing 373 n n 
C19 N18 UFY sing 374 n n 
C22 C23 UFY sing 375 n n 
C24 C23 UFY doub 376 n y 
C24 C25 UFY sing 377 n y 
C23 C28 UFY sing 378 n y 
C25 C26 UFY doub 379 n y 
C28 C27 UFY doub 380 n y 
N18 C7 UFY sing 381 n n 
O8 C7 UFY doub 382 n n 
C26 C27 UFY sing 383 n y 
C7 C5 UFY sing 384 n n 
C5 N6 UFY doub 385 n y 
C5 C4 UFY sing 386 n y 
N6 C1 UFY sing 387 n y 
C4 N3 UFY doub 388 n y 
C1 C2 UFY doub 389 n y 
N3 C2 UFY sing 390 n y 
C1 H1 UFY sing 391 n n 
C2 H2 UFY sing 392 n n 
C11 H3 UFY sing 393 n n 
C11 H4 UFY sing 394 n n 
C12 H5 UFY sing 395 n n 
C17 H6 UFY sing 396 n n 
C17 H7 UFY sing 397 n n 
C17 H8 UFY sing 398 n n 
C19 H9 UFY sing 399 n n 
C22 H10 UFY sing 400 n n 
C22 H11 UFY sing 401 n n 
C24 H12 UFY sing 402 n n 
C25 H13 UFY sing 403 n n 
C26 H14 UFY sing 404 n n 
C27 H15 UFY sing 405 n n 
C28 H16 UFY sing 406 n n 
C10 H17 UFY sing 407 n n 
C4 H18 UFY sing 408 n n 
C9 H19 UFY sing 409 n n 
C9 H20 UFY sing 410 n n 
C9 H21 UFY sing 411 n n 
N13 H22 UFY sing 412 n n 
N18 H23 UFY sing 413 n n 
O15 H24 UFY sing 414 n n 
O16 H25 UFY sing 415 n n 
#
_atom_sites.entry_id                     6WZV 
_atom_sites.fract_transf_matrix[1][1]    0.005368 
_atom_sites.fract_transf_matrix[1][2]    0.003099 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 UFY A 1 1001 1 UFY LI1 . 
E 3 SO4 A 1 1002 1 SO4 SO4 . 
F 3 SO4 A 1 1003 4 SO4 SO4 . 
G 2 UFY B 1 1001 2 UFY LI1 . 
H 3 SO4 B 1 1002 2 SO4 SO4 . 
I 3 SO4 C 1 1001 3 SO4 SO4 . 
J 4 HOH A 1 1101 46 HOH HOH . 
J 4 HOH A 2 1102 9 HOH HOH . 
J 4 HOH A 3 1103 5 HOH HOH . 
J 4 HOH A 4 1104 52 HOH HOH . 
J 4 HOH A 5 1105 82 HOH HOH . 
J 4 HOH A 6 1106 32 HOH HOH . 
J 4 HOH A 7 1107 6 HOH HOH . 
J 4 HOH A 8 1108 10 HOH HOH . 
J 4 HOH A 9 1109 27 HOH HOH . 
J 4 HOH A 10 1110 39 HOH HOH . 
J 4 HOH A 11 1111 71 HOH HOH . 
J 4 HOH A 12 1112 88 HOH HOH . 
J 4 HOH A 13 1113 11 HOH HOH . 
J 4 HOH A 14 1114 16 HOH HOH . 
J 4 HOH A 15 1115 45 HOH HOH . 
J 4 HOH A 16 1116 31 HOH HOH . 
J 4 HOH A 17 1117 51 HOH HOH . 
J 4 HOH A 18 1118 33 HOH HOH . 
J 4 HOH A 19 1119 67 HOH HOH . 
J 4 HOH A 20 1120 53 HOH HOH . 
J 4 HOH A 21 1121 34 HOH HOH . 
J 4 HOH A 22 1122 30 HOH HOH . 
J 4 HOH A 23 1123 35 HOH HOH . 
J 4 HOH A 24 1124 80 HOH HOH . 
J 4 HOH A 25 1125 66 HOH HOH . 
J 4 HOH A 26 1126 38 HOH HOH . 
J 4 HOH A 27 1127 15 HOH HOH . 
J 4 HOH A 28 1128 54 HOH HOH . 
J 4 HOH A 29 1129 37 HOH HOH . 
J 4 HOH A 30 1130 79 HOH HOH . 
J 4 HOH A 31 1131 36 HOH HOH . 
J 4 HOH A 32 1132 23 HOH HOH . 
J 4 HOH A 33 1133 29 HOH HOH . 
J 4 HOH A 34 1134 64 HOH HOH . 
J 4 HOH A 35 1135 65 HOH HOH . 
J 4 HOH A 36 1136 74 HOH HOH . 
K 4 HOH B 1 1101 87 HOH HOH . 
K 4 HOH B 2 1102 70 HOH HOH . 
K 4 HOH B 3 1103 19 HOH HOH . 
K 4 HOH B 4 1104 4 HOH HOH . 
K 4 HOH B 5 1105 42 HOH HOH . 
K 4 HOH B 6 1106 7 HOH HOH . 
K 4 HOH B 7 1107 2 HOH HOH . 
K 4 HOH B 8 1108 25 HOH HOH . 
K 4 HOH B 9 1109 78 HOH HOH . 
K 4 HOH B 10 1110 12 HOH HOH . 
K 4 HOH B 11 1111 13 HOH HOH . 
K 4 HOH B 12 1112 81 HOH HOH . 
K 4 HOH B 13 1113 47 HOH HOH . 
K 4 HOH B 14 1114 21 HOH HOH . 
K 4 HOH B 15 1115 1 HOH HOH . 
K 4 HOH B 16 1116 41 HOH HOH . 
K 4 HOH B 17 1117 76 HOH HOH . 
K 4 HOH B 18 1118 14 HOH HOH . 
K 4 HOH B 19 1119 43 HOH HOH . 
K 4 HOH B 20 1120 22 HOH HOH . 
K 4 HOH B 21 1121 55 HOH HOH . 
K 4 HOH B 22 1122 28 HOH HOH . 
K 4 HOH B 23 1123 56 HOH HOH . 
K 4 HOH B 24 1124 84 HOH HOH . 
K 4 HOH B 25 1125 83 HOH HOH . 
K 4 HOH B 26 1126 73 HOH HOH . 
K 4 HOH B 27 1127 8 HOH HOH . 
K 4 HOH B 28 1128 48 HOH HOH . 
K 4 HOH B 29 1129 24 HOH HOH . 
K 4 HOH B 30 1130 58 HOH HOH . 
K 4 HOH B 31 1131 63 HOH HOH . 
K 4 HOH B 32 1132 40 HOH HOH . 
K 4 HOH B 33 1133 77 HOH HOH . 
K 4 HOH B 34 1134 26 HOH HOH . 
K 4 HOH B 35 1135 20 HOH HOH . 
K 4 HOH B 36 1136 57 HOH HOH . 
L 4 HOH C 1 1101 3 HOH HOH . 
L 4 HOH C 2 1102 59 HOH HOH . 
L 4 HOH C 3 1103 18 HOH HOH . 
L 4 HOH C 4 1104 50 HOH HOH . 
L 4 HOH C 5 1105 60 HOH HOH . 
L 4 HOH C 6 1106 62 HOH HOH . 
L 4 HOH C 7 1107 17 HOH HOH . 
L 4 HOH C 8 1108 85 HOH HOH . 
L 4 HOH C 9 1109 49 HOH HOH . 
L 4 HOH C 10 1110 61 HOH HOH . 
L 4 HOH C 11 1111 72 HOH HOH . 
L 4 HOH C 12 1112 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UFY . . . D 2 23.649 334.789 77.495 1 71.35 ? C1 UFY 1001 A 1 
HETATM 2 C C2 UFY . . . D 2 22.823 335.595 78.246 1 66.98 ? C2 UFY 1001 A 1 
HETATM 3 C C11 UFY . . . D 2 23.025 334.386 67.864 1 65.96 ? C11 UFY 1001 A 1 
HETATM 4 C C12 UFY . . . D 2 23.494 334.995 69.191 1 64.45 ? C12 UFY 1001 A 1 
HETATM 5 C C17 UFY . . . D 2 25.18 333.063 67.529 1 75.92 ? C17 UFY 1001 A 1 
HETATM 6 C C19 UFY . . . D 2 22.415 333.2 72.374 1 55.66 ? C19 UFY 1001 A 1 
HETATM 7 C C20 UFY . . . D 2 23.29 333.908 71.358 1 62.64 ? C20 UFY 1001 A 1 
HETATM 8 C C22 UFY . . . D 2 22.779 331.719 72.4 1 56.73 ? C22 UFY 1001 A 1 
HETATM 9 C C23 UFY . . . D 2 21.625 330.894 72.901 1 60.96 ? C23 UFY 1001 A 1 
HETATM 10 C C24 UFY . . . D 2 20.331 331.394 72.86 1 60.51 ? C24 UFY 1001 A 1 
HETATM 11 C C25 UFY . . . D 2 19.285 330.612 73.321 1 57.49 ? C25 UFY 1001 A 1 
HETATM 12 C C26 UFY . . . D 2 19.534 329.34 73.819 1 55.56 ? C26 UFY 1001 A 1 
HETATM 13 C C27 UFY . . . D 2 20.825 328.845 73.868 1 58.26 ? C27 UFY 1001 A 1 
HETATM 14 C C28 UFY . . . D 2 21.872 329.625 73.406 1 61.82 ? C28 UFY 1001 A 1 
HETATM 15 B B14 UFY . . . D 2 23.223 336.58 69.246 1 62.02 ? B14 UFY 1001 A 1 
HETATM 16 C C10 UFY . . . D 2 23.647 333.035 67.445 1 68.69 ? C10 UFY 1001 A 1 
HETATM 17 C C4 UFY . . . D 2 21.341 335.773 76.493 1 71.16 ? C4 UFY 1001 A 1 
HETATM 18 C C5 UFY . . . D 2 22.176 334.971 75.732 1 70.34 ? C5 UFY 1001 A 1 
HETATM 19 C C7 UFY . . . D 2 21.821 334.605 74.343 1 63.15 ? C7 UFY 1001 A 1 
HETATM 20 C C9 UFY . . . D 2 23.144 331.855 68.273 1 65.25 ? C9 UFY 1001 A 1 
HETATM 21 N N13 UFY . . . D 2 22.713 334.298 70.21 1 67.21 ? N13 UFY 1001 A 1 
HETATM 22 N N18 UFY . . . D 2 22.613 333.699 73.731 1 53.86 ? N18 UFY 1001 A 1 
HETATM 23 N N3 UFY . . . D 2 21.701 336.054 77.73 1 69.25 ? N3 UFY 1001 A 1 
HETATM 24 N N6 UFY . . . D 2 23.299 334.494 76.265 1 72.69 ? N6 UFY 1001 A 1 
HETATM 25 O O15 UFY . . . D 2 23.549 337.267 70.497 1 60.85 ? O15 UFY 1001 A 1 
HETATM 26 O O16 UFY . . . D 2 21.83 336.8 69.014 1 68.52 ? O16 UFY 1001 A 1 
HETATM 27 O O21 UFY . . . D 2 24.478 334.139 71.532 1 60.98 ? O21 UFY 1001 A 1 
HETATM 28 O O8 UFY . . . D 2 20.863 335.103 73.794 1 65.42 ? O8 UFY 1001 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           28 
#