data_6X01 # _model_server_result.job_id bAeBgFCbfG6fmfLMWYhatg _model_server_result.datetime_utc '2024-11-16 08:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 6X01 # _exptl.entry_id 6X01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X01 _cell.length_a 113.985 _cell.length_b 113.985 _cell.length_c 321.705 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 216 A CYS 216 1_555 A SG CYS 391 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 216 B CYS 216 1_555 B SG CYS 391 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 C SG CYS 216 C CYS 216 1_555 C SG CYS 391 C CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A O GLY 306 A GLY 306 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc2 A O THR 308 A THR 308 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc3 A O ASN 310 A ASN 310 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A O SER 349 A SER 349 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 A O ILE 350 A ILE 350 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc6 A O THR 352 A THR 352 1_555 F NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 A O ASN 401 A ASN 401 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc8 A OD1 ASP 405 A ASP 405 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc9 A OD2 ASP 405 A ASP 405 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc10 B O GLY 306 B GLY 306 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc11 B O THR 308 B THR 308 1_555 I NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc12 B O ASN 310 B ASN 310 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc13 B O SER 349 B SER 349 1_555 I NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc14 B O ILE 350 B ILE 350 1_555 I NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 B O THR 352 B THR 352 1_555 I NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc16 B O ASN 401 B ASN 401 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc17 B OD1 ASP 405 B ASP 405 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc18 B OD2 ASP 405 B ASP 405 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc19 C O GLY 306 C GLY 306 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc20 C O THR 308 C THR 308 1_555 L NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc21 C O ASN 310 C ASN 310 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc22 C O SER 349 C SER 349 1_555 L NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc23 C O ILE 350 C ILE 350 1_555 L NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc24 C O THR 352 C THR 352 1_555 L NA NA . C NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc25 C O ASN 401 C ASN 401 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc26 C OD1 ASP 405 C ASP 405 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc27 C OD2 ASP 405 C ASP 405 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 6X01 _atom_sites.fract_transf_matrix[1][1] 0.008773 _atom_sites.fract_transf_matrix[1][2] 0.005065 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ASP A 1 501 501 ASP ASP . E 3 NA A 1 502 601 NA NA . F 3 NA A 1 503 701 NA NA . G 2 ASP B 1 501 501 ASP ASP . H 3 NA B 1 502 601 NA NA . I 3 NA B 1 503 701 NA NA . J 2 ASP C 1 501 501 ASP ASP . K 3 NA C 1 502 601 NA NA . L 3 NA C 1 503 701 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . J 2 -1.761 -52.699 -2.446 1 158.16 ? N ASP 501 C 1 HETATM 2 C CA ASP . . . J 2 -0.393 -53.142 -2.684 1 162.99 ? CA ASP 501 C 1 HETATM 3 C C ASP . . . J 2 0.535 -52.651 -1.579 1 170.22 ? C ASP 501 C 1 HETATM 4 O O ASP . . . J 2 1.47 -53.344 -1.182 1 166.3 ? O ASP 501 C 1 HETATM 5 C CB ASP . . . J 2 0.087 -52.653 -4.047 1 159.41 ? CB ASP 501 C 1 HETATM 6 C CG ASP . . . J 2 -0.669 -53.296 -5.186 1 170.9 ? CG ASP 501 C 1 HETATM 7 O OD1 ASP . . . J 2 -0.816 -52.655 -6.246 1 188.64 ? OD1 ASP 501 C 1 HETATM 8 O OD2 ASP . . . J 2 -1.14 -54.437 -5.008 1 161.81 ? OD2 ASP 501 C 1 HETATM 9 O OXT ASP . . . J 2 0.372 -51.551 -1.053 1 170.67 ? OXT ASP 501 C 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #