data_6X0Q # _model_server_result.job_id a4MnpO-zBtnA_Rfb_X2exg _model_server_result.datetime_utc '2025-03-06 01:01:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":201}' # _entry.id 6X0Q # _exptl.entry_id 6X0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.53 _cell.angle_gamma 90 _cell.entry_id 6X0Q _cell.length_a 218.015 _cell.length_b 176.136 _cell.length_c 100.235 _cell.Z_PDB 68 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 T FE HEM . G HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc2 B NE2 HIS 101 B HIS 101 1_555 R FE HEM . C HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc3 C NE2 HIS 101 C HIS 101 1_555 R FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc4 D NE2 HIS 101 D HIS 101 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc5 S FE HEM . D HEM 201 2_555 F NE2 HIS 101 F HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc6 E NE2 HIS 101 E HIS 101 1_555 W FE HEM . L HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc7 G NE2 HIS 101 G HIS 101 1_555 T FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc8 H NE2 HIS 101 H HIS 101 1_555 U FE HEM . J HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc9 I NE2 HIS 101 I HIS 101 1_555 X FE HEM . N HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc10 J NE2 HIS 101 J HIS 101 1_555 U FE HEM . J HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc11 K NE2 HIS 101 K HIS 101 1_555 V FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc12 V FE HEM . K HEM 201 2_555 O NE2 HIS 101 O HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc13 L NE2 HIS 101 L HIS 101 1_555 W FE HEM . L HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc14 M NE2 HIS 101 M HIS 101 1_555 Y FE HEM . P HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc15 N NE2 HIS 101 N HIS 101 1_555 X FE HEM . N HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc16 P NE2 HIS 101 P HIS 101 1_555 Y FE HEM . P HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc17 Q NE2 HIS 101 Q HIS 101 1_555 Z FE HEM . Q HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc18 Q NE2 HIS 101 Q HIS 101 1_555 Z FE HEM . Q HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6X0Q _atom_sites.fract_transf_matrix[1][1] 0.004587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000688 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code R 2 HEM C 1 201 164 HEM HEM . S 2 HEM D 1 201 163 HEM HEM . T 2 HEM G 1 201 165 HEM HEM . U 2 HEM J 1 201 168 HEM HEM . V 2 HEM K 1 201 169 HEM HEM . W 2 HEM L 1 201 166 HEM HEM . X 2 HEM N 1 201 167 HEM HEM . Y 2 HEM P 1 201 161 HEM HEM . Z 2 HEM Q 1 201 162 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . V 2 -22.717 106.607 -12.969 0.82 60.8 ? CHA HEM 201 K 1 HETATM 2 C CHB HEM . . . V 2 -22.675 102.008 -14.547 0.82 56.43 ? CHB HEM 201 K 1 HETATM 3 C CHC HEM . . . V 2 -19.473 100.828 -11.068 0.82 55.22 ? CHC HEM 201 K 1 HETATM 4 C CHD HEM . . . V 2 -19.685 105.385 -9.373 0.82 57.69 ? CHD HEM 201 K 1 HETATM 5 C C1A HEM . . . V 2 -23.029 105.458 -13.664 0.82 62.96 ? C1A HEM 201 K 1 HETATM 6 C C2A HEM . . . V 2 -24.065 105.315 -14.67 0.82 65.19 ? C2A HEM 201 K 1 HETATM 7 C C3A HEM . . . V 2 -24.051 104.052 -15.102 0.82 60.39 ? C3A HEM 201 K 1 HETATM 8 C C4A HEM . . . V 2 -23.009 103.338 -14.388 0.82 59.86 ? C4A HEM 201 K 1 HETATM 9 C CMA HEM . . . V 2 -24.985 103.454 -16.177 0.82 59.52 ? CMA HEM 201 K 1 HETATM 10 C CAA HEM . . . V 2 -25.002 106.411 -15.155 0.82 62.16 ? CAA HEM 201 K 1 HETATM 11 C CBA HEM . . . V 2 -24.228 107.399 -16.022 0.82 69.28 ? CBA HEM 201 K 1 HETATM 12 C CGA HEM . . . V 2 -25.1 108.571 -16.391 0.82 73.24 ? CGA HEM 201 K 1 HETATM 13 O O1A HEM . . . V 2 -24.639 109.434 -17.182 0.82 68.85 ? O1A HEM 201 K 1 HETATM 14 O O2A HEM . . . V 2 -26.256 108.643 -15.898 0.82 75.24 ? O2A HEM 201 K 1 HETATM 15 C C1B HEM . . . V 2 -21.767 101.286 -13.796 0.82 54.94 ? C1B HEM 201 K 1 HETATM 16 C C2B HEM . . . V 2 -21.34 99.929 -14.059 0.82 56.36 ? C2B HEM 201 K 1 HETATM 17 C C3B HEM . . . V 2 -20.419 99.569 -13.069 0.82 51.98 ? C3B HEM 201 K 1 HETATM 18 C C4B HEM . . . V 2 -20.277 100.72 -12.186 0.82 53 ? C4B HEM 201 K 1 HETATM 19 C CMB HEM . . . V 2 -21.817 99.034 -15.224 0.82 54.37 ? CMB HEM 201 K 1 HETATM 20 C CAB HEM . . . V 2 -19.762 98.253 -13.004 0.82 47.13 ? CAB HEM 201 K 1 HETATM 21 C CBB HEM . . . V 2 -18.895 97.895 -12.049 0.82 47.27 ? CBB HEM 201 K 1 HETATM 22 C C1C HEM . . . V 2 -19.324 101.93 -10.251 0.82 55.38 ? C1C HEM 201 K 1 HETATM 23 C C2C HEM . . . V 2 -18.681 101.932 -8.951 0.82 51.77 ? C2C HEM 201 K 1 HETATM 24 C C3C HEM . . . V 2 -18.739 103.244 -8.459 0.82 53.09 ? C3C HEM 201 K 1 HETATM 25 C C4C HEM . . . V 2 -19.42 104.035 -9.465 0.82 55.54 ? C4C HEM 201 K 1 HETATM 26 C CMC HEM . . . V 2 -18.068 100.67 -8.3 0.82 46.85 ? CMC HEM 201 K 1 HETATM 27 C CAC HEM . . . V 2 -18.247 103.816 -7.195 0.82 49.81 ? CAC HEM 201 K 1 HETATM 28 C CBC HEM . . . V 2 -17.63 103.129 -6.227 0.82 53.99 ? CBC HEM 201 K 1 HETATM 29 C C1D HEM . . . V 2 -20.5 106.118 -10.209 0.82 59.86 ? C1D HEM 201 K 1 HETATM 30 C C2D HEM . . . V 2 -20.77 107.537 -10.101 0.82 62.27 ? C2D HEM 201 K 1 HETATM 31 C C3D HEM . . . V 2 -21.598 107.88 -11.09 0.82 64.7 ? C3D HEM 201 K 1 HETATM 32 C C4D HEM . . . V 2 -21.896 106.687 -11.863 0.82 63.83 ? C4D HEM 201 K 1 HETATM 33 C CMD HEM . . . V 2 -20.191 108.491 -9.033 0.82 56.95 ? CMD HEM 201 K 1 HETATM 34 C CAD HEM . . . V 2 -22.138 109.279 -11.34 0.82 66.47 ? CAD HEM 201 K 1 HETATM 35 C CBD HEM . . . V 2 -21.579 109.824 -12.651 0.82 77.12 ? CBD HEM 201 K 1 HETATM 36 C CGD HEM . . . V 2 -22.265 111.12 -12.997 0.82 77.83 ? CGD HEM 201 K 1 HETATM 37 O O1D HEM . . . V 2 -22.995 111.152 -14.021 0.82 81.04 ? O1D HEM 201 K 1 HETATM 38 O O2D HEM . . . V 2 -22.09 112.116 -12.248 0.82 78.19 ? O2D HEM 201 K 1 HETATM 39 N NA HEM . . . V 2 -22.407 104.23 -13.518 0.82 59.18 ? NA HEM 201 K 1 HETATM 40 N NB HEM . . . V 2 -21.105 101.726 -12.662 0.82 56.96 ? NB HEM 201 K 1 HETATM 41 N NC HEM . . . V 2 -19.756 103.213 -10.527 0.82 55.07 ? NC HEM 201 K 1 HETATM 42 N ND HEM . . . V 2 -21.204 105.631 -11.295 0.82 66.56 ? ND HEM 201 K 1 HETATM 43 FE FE HEM . . . V 2 -21.144 103.668 -11.972 0.82 52.1 ? FE HEM 201 K 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #