data_6X0Q
#
_model_server_result.job_id            oQpfLjFaukzIzVCVWjGxXg 
_model_server_result.datetime_utc      '2025-03-06 01:11:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x0q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":201}' 
#
_entry.id    6X0Q 
#
_exptl.entry_id    6X0Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.53 
_cell.angle_gamma         90 
_cell.entry_id            6X0Q 
_cell.length_a            218.015 
_cell.length_b            176.136 
_cell.length_c            100.235 
_cell.Z_PDB               68 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X0Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    34-meric 
_pdbx_struct_assembly.oligomeric_count      34 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 T FE HEM . G HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc2 B NE2 HIS 101 B HIS 101 1_555 R FE HEM . C HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc3 C NE2 HIS 101 C HIS 101 1_555 R FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc4 D NE2 HIS 101 D HIS 101 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc5 S FE HEM . D HEM 201 2_555 F NE2 HIS 101 F HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc6 E NE2 HIS 101 E HIS 101 1_555 W FE HEM . L HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc7 G NE2 HIS 101 G HIS 101 1_555 T FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc8 H NE2 HIS 101 H HIS 101 1_555 U FE HEM . J HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc9 I NE2 HIS 101 I HIS 101 1_555 X FE HEM . N HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc10 J NE2 HIS 101 J HIS 101 1_555 U FE HEM . J HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc11 K NE2 HIS 101 K HIS 101 1_555 V FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc12 V FE HEM . K HEM 201 2_555 O NE2 HIS 101 O HIS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc13 L NE2 HIS 101 L HIS 101 1_555 W FE HEM . L HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc14 M NE2 HIS 101 M HIS 101 1_555 Y FE HEM . P HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc15 N NE2 HIS 101 N HIS 101 1_555 X FE HEM . N HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc16 P NE2 HIS 101 P HIS 101 1_555 Y FE HEM . P HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc17 Q NE2 HIS 101 Q HIS 101 1_555 Z FE HEM . Q HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc18 Q NE2 HIS 101 Q HIS 101 1_555 Z FE HEM . Q HEM 201 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6X0Q 
_atom_sites.fract_transf_matrix[1][1]    0.004587 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000688 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005677 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010088 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
R 2 HEM C 1 201 164 HEM HEM . 
S 2 HEM D 1 201 163 HEM HEM . 
T 2 HEM G 1 201 165 HEM HEM . 
U 2 HEM J 1 201 168 HEM HEM . 
V 2 HEM K 1 201 169 HEM HEM . 
W 2 HEM L 1 201 166 HEM HEM . 
X 2 HEM N 1 201 167 HEM HEM . 
Y 2 HEM P 1 201 161 HEM HEM . 
Z 2 HEM Q 1 201 162 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . Y 2 -7.693 113.383 -4.317 0.87 66.79 ? CHA HEM 201 P 1 
HETATM 2 C CHB HEM . . . Y 2 -9.34 109.498 -6.731 0.87 62.42 ? CHB HEM 201 P 1 
HETATM 3 C CHC HEM . . . Y 2 -6.719 106.575 -3.845 0.87 61.21 ? CHC HEM 201 P 1 
HETATM 4 C CHD HEM . . . Y 2 -5.173 110.463 -1.358 0.87 63.68 ? CHD HEM 201 P 1 
HETATM 5 C C1A HEM . . . Y 2 -8.409 112.585 -5.184 0.87 68.95 ? C1A HEM 201 P 1 
HETATM 6 C C2A HEM . . . Y 2 -9.442 113.026 -6.102 0.87 71.18 ? C2A HEM 201 P 1 
HETATM 7 C C3A HEM . . . Y 2 -9.892 111.958 -6.764 0.87 66.38 ? C3A HEM 201 P 1 
HETATM 8 C C4A HEM . . . Y 2 -9.166 110.794 -6.293 0.87 65.85 ? C4A HEM 201 P 1 
HETATM 9 C CMA HEM . . . Y 2 -10.997 111.963 -7.843 0.87 65.51 ? CMA HEM 201 P 1 
HETATM 10 C CAA HEM . . . Y 2 -9.932 114.453 -6.287 0.87 68.15 ? CAA HEM 201 P 1 
HETATM 11 C CBA HEM . . . Y 2 -9.011 115.19 -7.254 0.87 75.27 ? CBA HEM 201 P 1 
HETATM 12 C CGA HEM . . . Y 2 -9.562 116.561 -7.553 0.87 79.23 ? CGA HEM 201 P 1 
HETATM 13 O O1A HEM . . . Y 2 -8.887 117.334 -8.281 0.87 74.84 ? O1A HEM 201 P 1 
HETATM 14 O O2A HEM . . . Y 2 -10.677 116.881 -7.065 0.87 81.23 ? O2A HEM 201 P 1 
HETATM 15 C C1B HEM . . . Y 2 -8.739 108.367 -6.217 0.87 60.93 ? C1B HEM 201 P 1 
HETATM 16 C C2B HEM . . . Y 2 -8.829 107.036 -6.776 0.87 62.35 ? C2B HEM 201 P 1 
HETATM 17 C C3B HEM . . . Y 2 -8.081 106.178 -5.962 0.87 57.97 ? C3B HEM 201 P 1 
HETATM 18 C C4B HEM . . . Y 2 -7.525 106.993 -4.887 0.87 58.99 ? C4B HEM 201 P 1 
HETATM 19 C CMB HEM . . . Y 2 -9.61 106.635 -8.047 0.87 60.36 ? CMB HEM 201 P 1 
HETATM 20 C CAB HEM . . . Y 2 -7.934 104.735 -6.212 0.87 53.12 ? CAB HEM 201 P 1 
HETATM 21 C CBB HEM . . . Y 2 -7.207 103.915 -5.444 0.87 53.26 ? CBB HEM 201 P 1 
HETATM 22 C C1C HEM . . . Y 2 -6.137 107.359 -2.87 0.87 61.37 ? C1C HEM 201 P 1 
HETATM 23 C C2C HEM . . . Y 2 -5.47 106.867 -1.68 0.87 57.76 ? C2C HEM 201 P 1 
HETATM 24 C C3C HEM . . . Y 2 -5.024 107.986 -0.961 0.87 59.08 ? C3C HEM 201 P 1 
HETATM 25 C C4C HEM . . . Y 2 -5.421 109.156 -1.719 0.87 61.53 ? C4C HEM 201 P 1 
HETATM 26 C CMC HEM . . . Y 2 -5.323 105.365 -1.339 0.87 52.84 ? CMC HEM 201 P 1 
HETATM 27 C CAC HEM . . . Y 2 -4.29 108.076 0.313 0.87 55.8 ? CAC HEM 201 P 1 
HETATM 28 C CBC HEM . . . Y 2 -3.873 107.031 1.038 0.87 59.98 ? CBC HEM 201 P 1 
HETATM 29 C C1D HEM . . . Y 2 -5.677 111.591 -1.97 0.87 65.85 ? C1D HEM 201 P 1 
HETATM 30 C C2D HEM . . . Y 2 -5.34 112.961 -1.639 0.87 68.26 ? C2D HEM 201 P 1 
HETATM 31 C C3D HEM . . . Y 2 -6.026 113.768 -2.451 0.87 70.69 ? C3D HEM 201 P 1 
HETATM 32 C C4D HEM . . . Y 2 -6.834 112.941 -3.331 0.87 69.82 ? C4D HEM 201 P 1 
HETATM 33 C CMD HEM . . . Y 2 -4.353 113.413 -0.541 0.87 62.94 ? CMD HEM 201 P 1 
HETATM 34 C CAD HEM . . . Y 2 -5.964 115.286 -2.436 0.87 72.46 ? CAD HEM 201 P 1 
HETATM 35 C CBD HEM . . . Y 2 -5.319 115.78 -3.727 0.87 83.11 ? CBD HEM 201 P 1 
HETATM 36 C CGD HEM . . . Y 2 -5.402 117.282 -3.8 0.87 83.82 ? CGD HEM 201 P 1 
HETATM 37 O O1D HEM . . . Y 2 -5.887 117.8 -4.839 0.87 87.03 ? O1D HEM 201 P 1 
HETATM 38 O O2D HEM . . . Y 2 -4.994 117.96 -2.821 0.87 84.18 ? O2D HEM 201 P 1 
HETATM 39 N NA HEM . . . Y 2 -8.269 111.215 -5.328 0.87 65.17 ? NA HEM 201 P 1 
HETATM 40 N NB HEM . . . Y 2 -7.947 108.3 -5.083 0.87 62.95 ? NB HEM 201 P 1 
HETATM 41 N NC HEM . . . Y 2 -6.087 108.741 -2.859 0.87 61.06 ? NC HEM 201 P 1 
HETATM 42 N ND HEM . . . Y 2 -6.593 111.616 -3.007 0.87 72.55 ? ND HEM 201 P 1 
HETATM 43 FE FE HEM . . . Y 2 -7.227 109.943 -4.071 0.87 58.09 ? FE HEM 201 P 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#