data_6X1A
#
_model_server_result.job_id            ogPTF6GnojB5JkV8woaeQQ 
_model_server_result.datetime_utc      '2024-11-23 01:24:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x1a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6X1A 
#
_exptl.entry_id    6X1A 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              555.599 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[(4-{6-[(4-cyano-2-fluorophenyl)methoxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-{[(2S)-oxetan-2-yl]methyl}-1H-benzimidazole-6-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6X1A 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X1A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 E SG CYS 55 R CYS 46 1_555 E SG CYS 80 R CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 E SG CYS 71 R CYS 62 1_555 E SG CYS 113 R CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 E SG CYS 94 R CYS 85 1_555 E SG CYS 135 R CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 E SG CYS 235 R CYS 226 1_555 E SG CYS 305 R CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C31 H30 F N5 O4' 
_chem_comp.formula_weight    555.599 
_chem_comp.id                UK4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[(4-{6-[(4-cyano-2-fluorophenyl)methoxy]pyridin-2-yl}piperidin-1-yl)methyl]-1-{[(2S)-oxetan-2-yl]methyl}-1H-benzimidazole-6-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C18 UK4 doub 358 n y 
C17 C16 UK4 sing 359 n y 
C18 C19 UK4 sing 360 n y 
N15 C16 UK4 sing 361 n y 
N15 C14 UK4 doub 362 n y 
C16 C24 UK4 doub 363 n y 
O21 C20 UK4 doub 364 n n 
C19 C20 UK4 sing 365 n n 
C19 C23 UK4 doub 366 n y 
C20 O22 UK4 sing 367 n n 
C14 C13 UK4 sing 368 n n 
C14 N25 UK4 sing 369 n y 
C24 C23 UK4 sing 370 n y 
C24 N25 UK4 sing 371 n y 
C13 N12 UK4 sing 372 n n 
C11 N12 UK4 sing 373 n n 
C11 C10 UK4 sing 374 n n 
N12 C31 UK4 sing 375 n n 
N25 C26 UK4 sing 376 n n 
C10 C09 UK4 sing 377 n n 
C29 O30 UK4 sing 378 n n 
C29 C28 UK4 sing 379 n n 
C09 C32 UK4 sing 380 n n 
C09 C08 UK4 sing 381 n n 
O30 C27 UK4 sing 382 n n 
C31 C32 UK4 sing 383 n n 
C26 C27 UK4 sing 384 n n 
C28 C27 UK4 sing 385 n n 
C08 C33 UK4 doub 386 n y 
C08 N07 UK4 sing 387 n y 
C33 C34 UK4 sing 388 n y 
N07 C06 UK4 doub 389 n y 
C34 C35 UK4 doub 390 n y 
C06 C35 UK4 sing 391 n y 
C06 O05 UK4 sing 392 n n 
F01 C02 UK4 sing 393 n n 
O05 C04 UK4 sing 394 n n 
C04 C03 UK4 sing 395 n n 
C02 C03 UK4 doub 396 n y 
C02 C41 UK4 sing 397 n y 
C03 C36 UK4 sing 398 n y 
C41 C38 UK4 doub 399 n y 
C36 C37 UK4 doub 400 n y 
C38 C37 UK4 sing 401 n y 
C38 C39 UK4 sing 402 n n 
C39 N40 UK4 trip 403 n n 
C29 H1 UK4 sing 404 n n 
C29 H2 UK4 sing 405 n n 
C28 H3 UK4 sing 406 n n 
C28 H4 UK4 sing 407 n n 
C27 H5 UK4 sing 408 n n 
C26 H6 UK4 sing 409 n n 
C26 H7 UK4 sing 410 n n 
C13 H8 UK4 sing 411 n n 
C13 H9 UK4 sing 412 n n 
C11 H10 UK4 sing 413 n n 
C11 H11 UK4 sing 414 n n 
C10 H12 UK4 sing 415 n n 
C10 H13 UK4 sing 416 n n 
C17 H14 UK4 sing 417 n n 
C18 H15 UK4 sing 418 n n 
C04 H16 UK4 sing 419 n n 
C04 H17 UK4 sing 420 n n 
C09 H18 UK4 sing 421 n n 
C23 H19 UK4 sing 422 n n 
C31 H20 UK4 sing 423 n n 
C31 H21 UK4 sing 424 n n 
C32 H22 UK4 sing 425 n n 
C32 H23 UK4 sing 426 n n 
C33 H24 UK4 sing 427 n n 
C34 H25 UK4 sing 428 n n 
C35 H26 UK4 sing 429 n n 
C36 H27 UK4 sing 430 n n 
C37 H28 UK4 sing 431 n n 
C41 H29 UK4 sing 432 n n 
O22 H31 UK4 sing 433 n n 
#
_atom_sites.entry_id                     6X1A 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 UK4 R 1 501 501 UK4 PZ5 . 
G 7 HOH R 1 601 13 HOH HOH . 
G 7 HOH R 2 602 19 HOH HOH . 
G 7 HOH R 3 603 11 HOH HOH . 
G 7 HOH R 4 604 23 HOH HOH . 
G 7 HOH R 5 605 12 HOH HOH . 
G 7 HOH R 6 606 5 HOH HOH . 
G 7 HOH R 7 607 16 HOH HOH . 
G 7 HOH R 8 608 14 HOH HOH . 
G 7 HOH R 9 609 17 HOH HOH . 
G 7 HOH R 10 610 18 HOH HOH . 
G 7 HOH R 11 611 9 HOH HOH . 
G 7 HOH R 12 612 7 HOH HOH . 
G 7 HOH R 13 613 20 HOH HOH . 
G 7 HOH R 14 614 22 HOH HOH . 
G 7 HOH R 15 615 3 HOH HOH . 
G 7 HOH R 16 616 2 HOH HOH . 
G 7 HOH R 17 617 10 HOH HOH . 
G 7 HOH R 18 618 21 HOH HOH . 
G 7 HOH R 19 619 15 HOH HOH . 
G 7 HOH R 20 620 6 HOH HOH . 
G 7 HOH R 21 621 4 HOH HOH . 
G 7 HOH R 22 622 8 HOH HOH . 
G 7 HOH R 23 623 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C29 UK4 . . . F 6 126.773 119.52 154.041 1 25.21 ? C29 UK4 501 R 1 
HETATM 2 C C28 UK4 . . . F 6 126.568 118.307 154.805 1 25.21 ? C28 UK4 501 R 1 
HETATM 3 C C27 UK4 . . . F 6 127.962 118.255 155.089 1 25.21 ? C27 UK4 501 R 1 
HETATM 4 C C26 UK4 . . . F 6 128.61 116.987 154.663 1 25.21 ? C26 UK4 501 R 1 
HETATM 5 C C20 UK4 . . . F 6 124.528 114.038 152.233 1 25.21 ? C20 UK4 501 R 1 
HETATM 6 C C13 UK4 . . . F 6 130.729 118.181 152.764 1 25.21 ? C13 UK4 501 R 1 
HETATM 7 C C11 UK4 . . . F 6 131.772 115.97 152.982 1 25.21 ? C11 UK4 501 R 1 
HETATM 8 C C10 UK4 . . . F 6 133.073 115.245 153.327 1 25.21 ? C10 UK4 501 R 1 
HETATM 9 C C14 UK4 . . . F 6 129.516 117.328 152.378 1 25.21 ? C14 UK4 501 R 1 
HETATM 10 C C16 UK4 . . . F 6 128.072 116.257 151.178 1 25.21 ? C16 UK4 501 R 1 
HETATM 11 C C17 UK4 . . . F 6 127.299 115.643 150.182 1 25.21 ? C17 UK4 501 R 1 
HETATM 12 C C18 UK4 . . . F 6 126.16 114.933 150.528 1 25.21 ? C18 UK4 501 R 1 
HETATM 13 C C19 UK4 . . . F 6 125.782 114.828 151.861 1 25.21 ? C19 UK4 501 R 1 
HETATM 14 C C02 UK4 . . . F 6 135.29 119.174 157.947 1 25.21 ? C02 UK4 501 R 1 
HETATM 15 C C03 UK4 . . . F 6 136.082 118.084 158.27 1 25.21 ? C03 UK4 501 R 1 
HETATM 16 C C04 UK4 . . . F 6 137.308 117.769 157.403 1 25.21 ? C04 UK4 501 R 1 
HETATM 17 C C06 UK4 . . . F 6 136.578 115.6 156.781 1 25.21 ? C06 UK4 501 R 1 
HETATM 18 C C08 UK4 . . . F 6 134.891 115.399 155.211 1 25.21 ? C08 UK4 501 R 1 
HETATM 19 C C09 UK4 . . . F 6 134.078 116.05 154.096 1 25.21 ? C09 UK4 501 R 1 
HETATM 20 C C23 UK4 . . . F 6 126.547 115.435 152.848 1 25.21 ? C23 UK4 501 R 1 
HETATM 21 C C24 UK4 . . . F 6 127.701 116.156 152.5 1 25.21 ? C24 UK4 501 R 1 
HETATM 22 C C31 UK4 . . . F 6 132.229 117.742 154.564 1 25.21 ? C31 UK4 501 R 1 
HETATM 23 C C32 UK4 . . . F 6 133.533 117.093 155.016 1 25.21 ? C32 UK4 501 R 1 
HETATM 24 C C33 UK4 . . . F 6 134.635 114.092 155.585 1 25.21 ? C33 UK4 501 R 1 
HETATM 25 C C34 UK4 . . . F 6 135.396 113.538 156.602 1 25.21 ? C34 UK4 501 R 1 
HETATM 26 C C35 UK4 . . . F 6 136.382 114.299 157.21 1 25.21 ? C35 UK4 501 R 1 
HETATM 27 C C36 UK4 . . . F 6 135.761 117.302 159.371 1 25.21 ? C36 UK4 501 R 1 
HETATM 28 C C37 UK4 . . . F 6 134.648 117.606 160.138 1 25.21 ? C37 UK4 501 R 1 
HETATM 29 C C38 UK4 . . . F 6 133.86 118.695 159.811 1 25.21 ? C38 UK4 501 R 1 
HETATM 30 C C39 UK4 . . . F 6 132.633 119.037 160.656 1 25.21 ? C39 UK4 501 R 1 
HETATM 31 C C41 UK4 . . . F 6 134.18 119.479 158.715 1 25.21 ? C41 UK4 501 R 1 
HETATM 32 F F01 UK4 . . . F 6 135.602 119.949 156.87 1 25.21 ? F01 UK4 501 R 1 
HETATM 33 N N07 UK4 . . . F 6 135.839 116.093 155.81 1 25.21 ? N07 UK4 501 R 1 
HETATM 34 N N12 UK4 . . . F 6 131.92 117.434 153.144 1 25.21 ? N12 UK4 501 R 1 
HETATM 35 N N15 UK4 . . . F 6 129.194 116.99 151.142 1 25.21 ? N15 UK4 501 R 1 
HETATM 36 N N25 UK4 . . . F 6 128.612 116.837 153.214 1 25.21 ? N25 UK4 501 R 1 
HETATM 37 N N40 UK4 . . . F 6 131.724 119.289 161.283 1 25.21 ? N40 UK4 501 R 1 
HETATM 38 O O05 UK4 . . . F 6 137.571 116.391 157.383 1 25.21 ? O05 UK4 501 R 1 
HETATM 39 O O21 UK4 . . . F 6 123.706 113.711 151.339 1 25.21 ? O21 UK4 501 R 1 
HETATM 40 O O22 UK4 . . . F 6 124.319 113.712 153.43 1 25.21 ? O22 UK4 501 R 1 
HETATM 41 O O30 UK4 . . . F 6 128.183 119.367 154.183 1 25.21 ? O30 UK4 501 R 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           212 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#