data_6X1M
#
_model_server_result.job_id            pvcF4Sri7oaLCxk5BcbTmA 
_model_server_result.datetime_utc      '2025-02-17 18:35:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6x1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    6X1M 
#
_exptl.entry_id    6X1M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.264 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1R)-4-phenyl-1-{[N-(pyrazine-2-carbonyl)-D-norvalyl]amino}butyl]boronic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6X1M 
_cell.length_a            185.769 
_cell.length_b            185.769 
_cell.length_c            159.773 
_cell.Z_PDB               54 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6X1M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,E 2 1 
C 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 114 A SER 855 1_555 D B9 UKS . A UKS 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 B OG SER 114 B SER 855 1_555 E B9 UKS . B UKS 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? 
#
_chem_comp.formula           'C20 H27 B N4 O4' 
_chem_comp.formula_weight    398.264 
_chem_comp.id                UKS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1R)-4-phenyl-1-{[N-(pyrazine-2-carbonyl)-D-norvalyl]amino}butyl]boronic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C27 UKS doub 356 n y 
C28 C29 UKS sing 357 n y 
C27 C26 UKS sing 358 n y 
C29 C24 UKS doub 359 n y 
C26 C25 UKS doub 360 n y 
C24 C25 UKS sing 361 n y 
C24 C23 UKS sing 362 n n 
C23 C11 UKS sing 363 n n 
C10 C11 UKS sing 364 n n 
C10 C8 UKS sing 365 n n 
B9 O12 UKS sing 366 n n 
B9 C8 UKS sing 367 n n 
B9 O13 UKS sing 368 n n 
C8 N6 UKS sing 369 n n 
N6 C3 UKS sing 370 n n 
C21 C22 UKS sing 371 n n 
C21 C4 UKS sing 372 n n 
C3 O5 UKS doub 373 n n 
C3 C2 UKS sing 374 n n 
C2 C4 UKS sing 375 n n 
C2 N1 UKS sing 376 n n 
O15 C7 UKS doub 377 n n 
N1 C7 UKS sing 378 n n 
C7 C14 UKS sing 379 n n 
C14 C20 UKS doub 380 n y 
C14 N16 UKS sing 381 n y 
C20 N19 UKS sing 382 n y 
N16 C17 UKS doub 383 n y 
N19 C18 UKS doub 384 n y 
C17 C18 UKS sing 385 n y 
C2 H1 UKS sing 386 n n 
C11 H2 UKS sing 387 n n 
C11 H3 UKS sing 388 n n 
C17 H4 UKS sing 389 n n 
C18 H5 UKS sing 390 n n 
C20 H6 UKS sing 391 n n 
C21 H7 UKS sing 392 n n 
C21 H8 UKS sing 393 n n 
C22 H9 UKS sing 394 n n 
C22 H10 UKS sing 395 n n 
C22 H11 UKS sing 396 n n 
C23 H12 UKS sing 397 n n 
C23 H13 UKS sing 398 n n 
C25 H14 UKS sing 399 n n 
C26 H15 UKS sing 400 n n 
C27 H16 UKS sing 401 n n 
C28 H17 UKS sing 402 n n 
C29 H18 UKS sing 403 n n 
C10 H19 UKS sing 404 n n 
C10 H20 UKS sing 405 n n 
C4 H21 UKS sing 406 n n 
C4 H22 UKS sing 407 n n 
C8 H23 UKS sing 408 n n 
N1 H24 UKS sing 409 n n 
N6 H25 UKS sing 410 n n 
O12 H26 UKS sing 411 n n 
O13 H27 UKS sing 412 n n 
#
_atom_sites.entry_id                     6X1M 
_atom_sites.fract_transf_matrix[1][1]    0.005383 
_atom_sites.fract_transf_matrix[1][2]    0.003108 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006216 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 UKS A 1 1001 1001 UKS LI1 . 
E 2 UKS B 1 1001 1001 UKS LI1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 UKS . . . D 2 22.126 331.921 72.876 1 51.87 ? C2 UKS 1001 A 1 
HETATM 2 C C3 UKS . . . D 2 23.118 332.54 71.918 1 62.88 ? C3 UKS 1001 A 1 
HETATM 3 C C11 UKS . . . D 2 23.679 331.599 68.637 1 37.21 ? C11 UKS 1001 A 1 
HETATM 4 C C14 UKS . . . D 2 21.513 334.111 75.917 1 56.93 ? C14 UKS 1001 A 1 
HETATM 5 C C17 UKS . . . D 2 22.795 334.383 77.803 1 54.99 ? C17 UKS 1001 A 1 
HETATM 6 C C18 UKS . . . D 2 21.78 335.131 78.382 1 50.26 ? C18 UKS 1001 A 1 
HETATM 7 C C20 UKS . . . D 2 20.485 334.858 76.507 1 48.61 ? C20 UKS 1001 A 1 
HETATM 8 C C21 UKS . . . D 2 23.22 329.933 71.783 1 12.15 ? C21 UKS 1001 A 1 
HETATM 9 C C22 UKS . . . D 2 23.544 328.438 71.954 1 1.29 ? C22 UKS 1001 A 1 
HETATM 10 C C23 UKS . . . D 2 23.435 330.869 67.316 1 36.37 ? C23 UKS 1001 A 1 
HETATM 11 C C24 UKS . . . D 2 24.616 330.997 66.383 1 25.17 ? C24 UKS 1001 A 1 
HETATM 12 C C25 UKS . . . D 2 25.738 331.718 66.772 1 19.97 ? C25 UKS 1001 A 1 
HETATM 13 C C26 UKS . . . D 2 26.813 331.834 65.902 1 28.08 ? C26 UKS 1001 A 1 
HETATM 14 C C27 UKS . . . D 2 26.769 331.224 64.65 1 33.15 ? C27 UKS 1001 A 1 
HETATM 15 C C28 UKS . . . D 2 25.649 330.508 64.258 1 24.06 ? C28 UKS 1001 A 1 
HETATM 16 C C29 UKS . . . D 2 24.571 330.395 65.125 1 24.64 ? C29 UKS 1001 A 1 
HETATM 17 B B9 UKS . . . D 2 23.41 335.289 69.819 1 51.22 ? B9 UKS 1001 A 1 
HETATM 18 C C10 UKS . . . D 2 23.295 333.077 68.511 1 43.22 ? C10 UKS 1001 A 1 
HETATM 19 C C4 UKS . . . D 2 22.36 330.407 72.963 1 31.09 ? C4 UKS 1001 A 1 
HETATM 20 C C7 UKS . . . D 2 21.386 333.542 74.551 1 51.17 ? C7 UKS 1001 A 1 
HETATM 21 C C8 UKS . . . D 2 23.579 333.729 69.869 1 56.7 ? C8 UKS 1001 A 1 
HETATM 22 N N1 UKS . . . D 2 22.207 332.525 74.209 1 55.77 ? N1 UKS 1001 A 1 
HETATM 23 N N16 UKS . . . D 2 22.641 333.893 76.592 1 58.44 ? N16 UKS 1001 A 1 
HETATM 24 N N19 UKS . . . D 2 20.651 335.35 77.727 1 44.89 ? N19 UKS 1001 A 1 
HETATM 25 N N6 UKS . . . D 2 22.643 333.137 70.812 1 62.26 ? N6 UKS 1001 A 1 
HETATM 26 O O12 UKS . . . D 2 22.033 335.62 69.847 1 56.16 ? O12 UKS 1001 A 1 
HETATM 27 O O13 UKS . . . D 2 24.029 335.878 70.952 1 40.03 ? O13 UKS 1001 A 1 
HETATM 28 O O15 UKS . . . D 2 20.579 333.984 73.75 1 41.76 ? O15 UKS 1001 A 1 
HETATM 29 O O5 UKS . . . D 2 24.315 332.509 72.119 1 66.4 ? O5 UKS 1001 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           29 
#