data_6X1M # _model_server_result.job_id 30NKerLX-CdnCcP70cJSCw _model_server_result.datetime_utc '2024-11-05 06:39:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6x1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 6X1M # _exptl.entry_id 6X1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.264 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R)-4-phenyl-1-{[N-(pyrazine-2-carbonyl)-D-norvalyl]amino}butyl]boronic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6X1M _cell.length_a 185.769 _cell.length_b 185.769 _cell.length_c 159.773 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,E 2 1 C 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 114 A SER 855 1_555 D B9 UKS . A UKS 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 B OG SER 114 B SER 855 1_555 E B9 UKS . B UKS 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? # _chem_comp.formula 'C20 H27 B N4 O4' _chem_comp.formula_weight 398.264 _chem_comp.id UKS _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R)-4-phenyl-1-{[N-(pyrazine-2-carbonyl)-D-norvalyl]amino}butyl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 UKS doub 356 n y C28 C29 UKS sing 357 n y C27 C26 UKS sing 358 n y C29 C24 UKS doub 359 n y C26 C25 UKS doub 360 n y C24 C25 UKS sing 361 n y C24 C23 UKS sing 362 n n C23 C11 UKS sing 363 n n C10 C11 UKS sing 364 n n C10 C8 UKS sing 365 n n B9 O12 UKS sing 366 n n B9 C8 UKS sing 367 n n B9 O13 UKS sing 368 n n C8 N6 UKS sing 369 n n N6 C3 UKS sing 370 n n C21 C22 UKS sing 371 n n C21 C4 UKS sing 372 n n C3 O5 UKS doub 373 n n C3 C2 UKS sing 374 n n C2 C4 UKS sing 375 n n C2 N1 UKS sing 376 n n O15 C7 UKS doub 377 n n N1 C7 UKS sing 378 n n C7 C14 UKS sing 379 n n C14 C20 UKS doub 380 n y C14 N16 UKS sing 381 n y C20 N19 UKS sing 382 n y N16 C17 UKS doub 383 n y N19 C18 UKS doub 384 n y C17 C18 UKS sing 385 n y C2 H1 UKS sing 386 n n C11 H2 UKS sing 387 n n C11 H3 UKS sing 388 n n C17 H4 UKS sing 389 n n C18 H5 UKS sing 390 n n C20 H6 UKS sing 391 n n C21 H7 UKS sing 392 n n C21 H8 UKS sing 393 n n C22 H9 UKS sing 394 n n C22 H10 UKS sing 395 n n C22 H11 UKS sing 396 n n C23 H12 UKS sing 397 n n C23 H13 UKS sing 398 n n C25 H14 UKS sing 399 n n C26 H15 UKS sing 400 n n C27 H16 UKS sing 401 n n C28 H17 UKS sing 402 n n C29 H18 UKS sing 403 n n C10 H19 UKS sing 404 n n C10 H20 UKS sing 405 n n C4 H21 UKS sing 406 n n C4 H22 UKS sing 407 n n C8 H23 UKS sing 408 n n N1 H24 UKS sing 409 n n N6 H25 UKS sing 410 n n O12 H26 UKS sing 411 n n O13 H27 UKS sing 412 n n # _atom_sites.entry_id 6X1M _atom_sites.fract_transf_matrix[1][1] 0.005383 _atom_sites.fract_transf_matrix[1][2] 0.003108 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 UKS A 1 1001 1001 UKS LI1 . E 2 UKS B 1 1001 1001 UKS LI1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UKS . . . E 2 20.074 307.452 73.097 1 76.62 ? C2 UKS 1001 B 1 HETATM 2 C C3 UKS . . . E 2 21.057 307.029 72.042 1 88.6 ? C3 UKS 1001 B 1 HETATM 3 C C11 UKS . . . E 2 20.571 305.959 68.558 1 74.32 ? C11 UKS 1001 B 1 HETATM 4 C C14 UKS . . . E 2 21.865 309.013 76.112 1 92.3 ? C14 UKS 1001 B 1 HETATM 5 C C17 UKS . . . E 2 23.256 308.16 77.74 1 96.43 ? C17 UKS 1001 B 1 HETATM 6 C C18 UKS . . . E 2 23.061 309.297 78.506 1 87.74 ? C18 UKS 1001 B 1 HETATM 7 C C20 UKS . . . E 2 21.67 310.152 76.898 1 94.43 ? C20 UKS 1001 B 1 HETATM 8 C C21 UKS . . . E 2 18.892 305.53 71.923 1 29.83 ? C21 UKS 1001 B 1 HETATM 9 C C22 UKS . . . E 2 18.048 304.276 72.171 1 5.5 ? C22 UKS 1001 B 1 HETATM 10 C C23 UKS . . . E 2 19.573 305.928 67.402 1 69.7 ? C23 UKS 1001 B 1 HETATM 11 C C24 UKS . . . E 2 20.091 305.026 66.307 1 68.54 ? C24 UKS 1001 B 1 HETATM 12 C C25 UKS . . . E 2 19.44 304.981 65.084 1 64.78 ? C25 UKS 1001 B 1 HETATM 13 C C26 UKS . . . E 2 19.918 304.159 64.079 1 58.95 ? C26 UKS 1001 B 1 HETATM 14 C C27 UKS . . . E 2 21.042 303.38 64.296 1 54.59 ? C27 UKS 1001 B 1 HETATM 15 C C28 UKS . . . E 2 21.695 303.427 65.513 1 56.26 ? C28 UKS 1001 B 1 HETATM 16 C C29 UKS . . . E 2 21.218 304.249 66.518 1 61.75 ? C29 UKS 1001 B 1 HETATM 17 B B9 UKS . . . E 2 23.346 308.342 69.777 1 96.06 ? B9 UKS 1001 B 1 HETATM 18 C C10 UKS . . . E 2 21.368 307.266 68.555 1 85.34 ? C10 UKS 1001 B 1 HETATM 19 C C4 UKS . . . E 2 19.007 306.349 73.216 1 56.52 ? C4 UKS 1001 B 1 HETATM 20 C C7 UKS . . . E 2 21.189 308.879 74.787 1 75.59 ? C7 UKS 1001 B 1 HETATM 21 C C8 UKS . . . E 2 22.131 307.351 69.883 1 93.33 ? C8 UKS 1001 B 1 HETATM 22 N N1 UKS . . . E 2 20.752 307.659 74.386 1 77.75 ? N1 UKS 1001 B 1 HETATM 23 N N16 UKS . . . E 2 22.661 308.042 76.568 1 102.36 ? N16 UKS 1001 B 1 HETATM 24 N N19 UKS . . . E 2 22.272 310.262 78.07 1 89.27 ? N19 UKS 1001 B 1 HETATM 25 N N6 UKS . . . E 2 21.186 307.766 70.921 1 101.29 ? N6 UKS 1001 B 1 HETATM 26 O O12 UKS . . . E 2 22.886 309.682 69.87 1 85.44 ? O12 UKS 1001 B 1 HETATM 27 O O13 UKS . . . E 2 24.263 308.107 70.833 1 109.79 ? O13 UKS 1001 B 1 HETATM 28 O O15 UKS . . . E 2 21.031 309.855 74.07 1 61.67 ? O15 UKS 1001 B 1 HETATM 29 O O5 UKS . . . E 2 21.724 306.03 72.202 1 77.32 ? O5 UKS 1001 B 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #